Wall clock time and date at job start Tue Mar 31 2020 17:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47494 * 2 1 4 4 C 1.53000 * 109.46900 * 120.00323 * 2 1 3 5 5 N 1.46503 * 109.47049 * 174.99336 * 4 2 1 6 6 C 1.46499 * 120.00524 * 269.99828 * 5 4 2 7 7 C 1.34784 * 119.99426 * 90.00247 * 5 4 2 8 8 O 1.21279 * 119.99845 * 359.97438 * 7 5 4 9 9 C 1.50693 * 119.99651 * 180.02562 * 7 5 4 10 10 C 1.53005 * 109.47161 * 179.97438 * 9 7 5 11 11 H 1.09002 * 109.69884 * 305.57678 * 10 9 7 12 12 C 1.53471 * 109.70896 * 184.99834 * 10 9 7 13 13 O 1.43179 * 108.23578 * 180.58396 * 12 10 9 14 14 C 1.36106 * 116.68623 * 46.28886 * 13 12 10 15 15 C 1.38703 * 119.38876 * 162.89987 * 14 13 12 16 16 C 1.38196 * 120.06583 * 180.13326 * 15 14 13 17 17 C 1.38255 * 120.11173 * 359.44312 * 16 15 14 18 18 C 1.38200 * 120.11329 * 0.34138 * 17 16 15 19 19 C 1.38703 * 120.06679 * 0.02562 * 18 17 16 20 20 O 1.36100 * 119.40553 * 179.59906 * 19 18 17 21 21 N 1.46505 * 109.47124 * 239.99779 * 2 1 3 22 22 C 1.36942 * 119.99717 * 84.99999 * 21 2 1 23 23 H 1.08001 * 120.00213 * 0.02562 * 22 21 2 24 24 C 1.38812 * 119.99977 * 179.97438 * 22 21 2 25 25 N 1.31621 * 119.99854 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00099 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47462 * 89.99721 * 26 24 22 28 28 H 1.48507 * 109.47134 * 210.00163 * 26 24 22 29 29 H 1.48505 * 109.46939 * 329.99839 * 26 24 22 30 30 H 1.08998 * 109.47651 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47052 * 300.00253 * 1 2 3 32 32 H 1.09005 * 109.46899 * 59.99751 * 1 2 3 33 33 H 1.09006 * 109.46932 * 54.99606 * 4 2 1 34 34 H 1.08997 * 109.47041 * 295.00048 * 4 2 1 35 35 H 1.08998 * 109.46745 * 270.00259 * 6 5 4 36 36 H 1.09004 * 109.46914 * 30.00278 * 6 5 4 37 37 H 1.08997 * 109.46988 * 150.00400 * 6 5 4 38 38 H 1.08998 * 109.47966 * 59.99711 * 9 7 5 39 39 H 1.09008 * 109.47161 * 299.99483 * 9 7 5 40 40 H 1.09009 * 109.70930 * 60.89794 * 12 10 9 41 41 H 1.08996 * 109.74745 * 300.29363 * 12 10 9 42 42 H 1.07998 * 119.96930 * 359.84729 * 15 14 13 43 43 H 1.08002 * 119.94846 * 179.72881 * 16 15 14 44 44 H 1.07992 * 119.94650 * 180.31475 * 17 16 15 45 45 H 1.08000 * 119.96920 * 179.97438 * 18 17 16 46 46 H 0.97003 * 120.00121 * 265.00790 * 21 2 1 47 47 H 0.97004 * 120.00043 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8266 1.1905 6 6 4.1257 -1.9922 0.5611 7 6 4.2676 0.1490 1.7156 8 8 3.7495 1.1141 2.2363 9 6 5.7694 0.0410 1.6547 10 6 6.3963 1.2700 2.3161 11 1 6.0009 2.1762 1.8571 12 6 7.9211 1.2274 2.1474 13 8 8.4753 2.3817 2.7880 14 6 8.0105 2.6716 4.0340 15 6 8.7323 3.5335 4.8463 16 6 8.2747 3.8353 6.1149 17 6 7.0907 3.2883 6.5736 18 6 6.3644 2.4322 5.7676 19 6 6.8219 2.1192 4.4962 20 8 6.1001 1.2682 3.7170 21 7 2.0183 -0.6907 -1.1962 22 6 2.1491 -0.0075 -2.3758 23 1 1.8926 1.0405 -2.4242 24 6 2.6123 -0.6617 -3.5091 25 7 2.9253 -1.9388 -3.4499 26 14 2.7914 0.2703 -5.1179 27 1 4.1536 0.8555 -5.2021 28 1 2.5814 -0.6610 -6.2555 29 1 1.7812 1.3573 -5.1753 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6052 -1.7199 1.2951 34 1 1.7515 -0.1584 2.1369 35 1 4.2820 -2.7690 1.3096 36 1 3.4756 -2.3724 -0.2268 37 1 5.0850 -1.7024 0.1325 38 1 6.0880 -0.0131 0.6138 39 1 6.0906 -0.8584 2.1802 40 1 8.1741 1.2383 1.0871 41 1 8.3178 0.3239 2.6106 42 1 9.6553 3.9656 4.4888 43 1 8.8406 4.5032 6.7475 44 1 6.7330 3.5299 7.5635 45 1 5.4400 2.0059 6.1284 46 1 2.2489 -1.6319 -1.1526 47 1 3.2487 -2.3961 -4.2420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331456976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:34 Heat of formation + Delta-G solvation = -63.031070 kcal Electronic energy + Delta-G solvation = -29290.675806 eV Core-core repulsion = 25246.914751 eV Total energy + Delta-G solvation = -4043.761055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.40554 -39.60023 -37.83976 -37.31048 -36.28100 -34.23262 -33.04387 -32.00221 -30.78506 -29.43980 -28.84522 -27.60609 -26.71805 -25.35151 -23.93166 -23.37561 -22.79271 -20.82767 -20.18766 -19.21364 -18.55369 -17.67365 -17.30803 -16.94308 -16.64693 -15.79793 -15.46624 -15.26152 -15.15133 -14.71813 -14.59619 -14.46910 -14.02119 -13.90760 -13.77248 -13.53004 -13.18164 -12.84742 -12.64586 -12.31865 -12.15380 -12.07972 -11.94221 -11.91955 -11.74654 -11.41297 -11.30547 -11.27780 -11.00002 -10.88236 -10.72107 -10.50807 -10.38047 -10.09106 -9.68132 -9.45249 -8.96043 -8.77302 -8.16811 -8.14773 -6.98322 -5.82138 -3.08644 1.16041 1.19534 2.88870 2.95177 3.10694 3.33629 3.39643 3.46146 3.47334 3.60412 4.06181 4.47163 4.52676 4.56178 4.68064 4.82915 4.87889 5.03446 5.10324 5.16168 5.24116 5.30939 5.39153 5.48315 5.51683 5.58837 5.60355 5.65520 5.75497 5.83998 5.88792 6.00038 6.07751 6.12914 6.26497 6.28038 6.31648 6.34874 6.49892 6.68608 6.80158 6.83466 6.86720 7.15134 7.35167 7.67696 7.76648 8.38039 8.52763 9.49014 10.05159 10.41197 11.40859 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002808 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.619838 B = 9967.948381 C =10805.905499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.051 0.949 4 C 0.111 3.889 5 N -0.595 5.595 6 C 0.080 3.920 7 C 0.518 3.482 8 O -0.539 6.539 9 C -0.133 4.133 10 C 0.070 3.930 11 H 0.095 0.905 12 C 0.026 3.974 13 O -0.306 6.306 14 C 0.044 3.956 15 C -0.115 4.115 16 C -0.124 4.124 17 C -0.117 4.117 18 C -0.115 4.115 19 C 0.062 3.938 20 O -0.289 6.289 21 N -0.720 5.720 22 C -0.229 4.229 23 H 0.068 0.932 24 C -0.015 4.015 25 N -0.936 5.936 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.078 0.922 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.381 0.619 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.711 3.607 17.576 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.069 0.931 4 C -0.012 4.012 5 N -0.327 5.327 6 C -0.063 4.063 7 C 0.305 3.695 8 O -0.416 6.416 9 C -0.173 4.173 10 C 0.013 3.987 11 H 0.113 0.887 12 C -0.050 4.050 13 O -0.221 6.221 14 C -0.001 4.001 15 C -0.134 4.134 16 C -0.142 4.142 17 C -0.135 4.135 18 C -0.134 4.134 19 C 0.017 3.983 20 O -0.204 6.204 21 N -0.363 5.363 22 C -0.361 4.361 23 H 0.086 0.914 24 C -0.210 4.210 25 N -0.586 5.586 26 Si 0.735 3.265 27 H -0.219 1.219 28 H -0.218 1.218 29 H -0.209 1.209 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.138 0.862 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.096 0.904 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.152 0.848 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.425 4.178 17.635 20.908 hybrid contribution 0.104 -0.080 -1.369 1.375 sum 10.529 4.098 16.266 19.805 Atomic orbital electron populations 1.22369 0.98820 1.00829 1.00284 1.20660 0.91959 0.96279 0.86729 0.93094 1.21822 0.78862 1.01098 0.99407 1.47574 1.06728 1.21381 1.57016 1.21903 0.99736 0.87038 0.97651 1.20110 0.88624 0.82601 0.78187 1.90693 1.74821 1.31166 1.44959 1.21706 0.94319 0.98245 1.03057 1.22864 0.94192 1.00882 0.80726 0.88738 1.23717 0.93182 0.87964 1.00135 1.86305 1.63007 1.45718 1.27040 1.18976 0.93335 1.00976 0.86812 1.20415 1.00226 0.99592 0.93171 1.20870 0.97048 1.01122 0.95143 1.20905 0.95250 0.97542 0.99839 1.20494 1.01059 0.99713 0.92137 1.19016 0.90487 0.95630 0.93180 1.86408 1.58491 1.57217 1.18249 1.42482 1.78191 1.10392 1.05280 1.19239 1.35726 0.93800 0.87312 0.91434 1.24659 1.02504 0.95983 0.97849 1.69626 1.51562 1.08530 1.28858 0.86230 0.77754 0.78635 0.83840 1.21878 1.21846 1.20883 0.93473 0.94294 0.92590 0.91042 0.90201 0.93616 0.88927 0.91395 0.86165 0.87843 0.85684 0.90364 0.85028 0.85296 0.85257 0.84833 0.78377 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.49 37.16 0.35 -2.60 16 2 C 0.15 3.10 3.20 -67.93 -0.22 2.88 16 3 H 0.05 1.15 8.08 -51.93 -0.42 0.73 16 4 C 0.11 1.89 5.05 -4.04 -0.02 1.87 16 5 N -0.60 -9.77 2.73 -181.57 -0.50 -10.27 16 6 C 0.08 1.16 9.86 59.85 0.59 1.75 16 7 C 0.52 8.69 7.57 -10.99 -0.08 8.61 16 8 O -0.54 -10.86 15.05 -7.26 -0.11 -10.97 16 9 C -0.13 -1.66 3.98 -27.88 -0.11 -1.77 16 10 C 0.07 0.93 2.55 -26.48 -0.07 0.86 16 11 H 0.09 1.43 7.94 -51.93 -0.41 1.02 16 12 C 0.03 0.27 6.56 37.40 0.25 0.52 16 13 O -0.31 -3.94 10.42 -32.87 -0.34 -4.29 16 14 C 0.04 0.58 6.49 -39.14 -0.25 0.32 16 15 C -0.12 -1.25 9.96 -39.42 -0.39 -1.65 16 16 C -0.12 -1.15 10.04 -39.59 -0.40 -1.54 16 17 C -0.12 -1.13 10.04 -39.59 -0.40 -1.53 16 18 C -0.12 -1.39 9.96 -39.42 -0.39 -1.79 16 19 C 0.06 0.87 6.49 -39.14 -0.25 0.62 16 20 O -0.29 -4.37 9.40 -43.73 -0.41 -4.78 16 21 N -0.72 -16.97 4.57 -53.42 -0.24 -17.22 16 22 C -0.23 -6.15 9.93 -15.06 -0.15 -6.30 16 23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.94 -26.50 13.06 55.49 0.72 -25.77 16 26 Si 0.90 21.95 29.55 -169.99 -5.02 16.92 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 34 H 0.08 1.35 7.42 -51.93 -0.39 0.96 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.61 5.62 -51.93 -0.29 1.31 16 37 H 0.07 0.91 6.44 -51.93 -0.33 0.57 16 38 H 0.12 1.31 7.40 -51.93 -0.38 0.92 16 39 H 0.10 1.06 8.11 -51.92 -0.42 0.64 16 40 H 0.13 1.02 8.14 -51.92 -0.42 0.59 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.38 9.16 5.33 -40.82 -0.22 8.94 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -32.94 384.41 -8.81 -41.75 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.06 Total: 9.06 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.64 Total: -0.24 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.01 Total: -53.26 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.86 Total: -20.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.94 -8.81 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331456976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.279 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds