Wall clock time and date at job start Tue Mar 31 2020 17:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47494 * 2 1 4 4 C 1.53000 * 109.46900 * 120.00323 * 2 1 3 5 5 N 1.46503 * 109.47049 * 174.99336 * 4 2 1 6 6 C 1.46499 * 120.00524 * 269.99828 * 5 4 2 7 7 C 1.34784 * 119.99426 * 90.00247 * 5 4 2 8 8 O 1.21279 * 119.99845 * 359.97438 * 7 5 4 9 9 C 1.50693 * 119.99651 * 180.02562 * 7 5 4 10 10 C 1.53005 * 109.47161 * 179.97438 * 9 7 5 11 11 H 1.09002 * 109.69884 * 305.57678 * 10 9 7 12 12 C 1.53471 * 109.70896 * 184.99834 * 10 9 7 13 13 O 1.43179 * 108.23578 * 180.58396 * 12 10 9 14 14 C 1.36106 * 116.68623 * 46.28886 * 13 12 10 15 15 C 1.38703 * 119.38876 * 162.89987 * 14 13 12 16 16 C 1.38196 * 120.06583 * 180.13326 * 15 14 13 17 17 C 1.38255 * 120.11173 * 359.44312 * 16 15 14 18 18 C 1.38200 * 120.11329 * 0.34138 * 17 16 15 19 19 C 1.38703 * 120.06679 * 0.02562 * 18 17 16 20 20 O 1.36100 * 119.40553 * 179.59906 * 19 18 17 21 21 N 1.46505 * 109.47124 * 239.99779 * 2 1 3 22 22 C 1.36942 * 119.99717 * 84.99999 * 21 2 1 23 23 H 1.08001 * 120.00213 * 0.02562 * 22 21 2 24 24 C 1.38812 * 119.99977 * 179.97438 * 22 21 2 25 25 N 1.31621 * 119.99854 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00099 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47462 * 89.99721 * 26 24 22 28 28 H 1.48507 * 109.47134 * 210.00163 * 26 24 22 29 29 H 1.48505 * 109.46939 * 329.99839 * 26 24 22 30 30 H 1.08998 * 109.47651 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47052 * 300.00253 * 1 2 3 32 32 H 1.09005 * 109.46899 * 59.99751 * 1 2 3 33 33 H 1.09006 * 109.46932 * 54.99606 * 4 2 1 34 34 H 1.08997 * 109.47041 * 295.00048 * 4 2 1 35 35 H 1.08998 * 109.46745 * 270.00259 * 6 5 4 36 36 H 1.09004 * 109.46914 * 30.00278 * 6 5 4 37 37 H 1.08997 * 109.46988 * 150.00400 * 6 5 4 38 38 H 1.08998 * 109.47966 * 59.99711 * 9 7 5 39 39 H 1.09008 * 109.47161 * 299.99483 * 9 7 5 40 40 H 1.09009 * 109.70930 * 60.89794 * 12 10 9 41 41 H 1.08996 * 109.74745 * 300.29363 * 12 10 9 42 42 H 1.07998 * 119.96930 * 359.84729 * 15 14 13 43 43 H 1.08002 * 119.94846 * 179.72881 * 16 15 14 44 44 H 1.07992 * 119.94650 * 180.31475 * 17 16 15 45 45 H 1.08000 * 119.96920 * 179.97438 * 18 17 16 46 46 H 0.97003 * 120.00121 * 265.00790 * 21 2 1 47 47 H 0.97004 * 120.00043 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8266 1.1905 6 6 4.1257 -1.9922 0.5611 7 6 4.2676 0.1490 1.7156 8 8 3.7495 1.1141 2.2363 9 6 5.7694 0.0410 1.6547 10 6 6.3963 1.2700 2.3161 11 1 6.0009 2.1762 1.8571 12 6 7.9211 1.2274 2.1474 13 8 8.4753 2.3817 2.7880 14 6 8.0105 2.6716 4.0340 15 6 8.7323 3.5335 4.8463 16 6 8.2747 3.8353 6.1149 17 6 7.0907 3.2883 6.5736 18 6 6.3644 2.4322 5.7676 19 6 6.8219 2.1192 4.4962 20 8 6.1001 1.2682 3.7170 21 7 2.0183 -0.6907 -1.1962 22 6 2.1491 -0.0075 -2.3758 23 1 1.8926 1.0405 -2.4242 24 6 2.6123 -0.6617 -3.5091 25 7 2.9253 -1.9388 -3.4499 26 14 2.7914 0.2703 -5.1179 27 1 4.1536 0.8555 -5.2021 28 1 2.5814 -0.6610 -6.2555 29 1 1.7812 1.3573 -5.1753 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6052 -1.7199 1.2951 34 1 1.7515 -0.1584 2.1369 35 1 4.2820 -2.7690 1.3096 36 1 3.4756 -2.3724 -0.2268 37 1 5.0850 -1.7024 0.1325 38 1 6.0880 -0.0131 0.6138 39 1 6.0906 -0.8584 2.1802 40 1 8.1741 1.2383 1.0871 41 1 8.3178 0.3239 2.6106 42 1 9.6553 3.9656 4.4888 43 1 8.8406 4.5032 6.7475 44 1 6.7330 3.5299 7.5635 45 1 5.4400 2.0059 6.1284 46 1 2.2489 -1.6319 -1.1526 47 1 3.2487 -2.3961 -4.2420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331456976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:33 Heat of formation + Delta-G solvation = -82.663440 kcal Electronic energy + Delta-G solvation = -29291.527129 eV Core-core repulsion = 25246.914751 eV Total energy + Delta-G solvation = -4044.612379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.33176 -40.89202 -38.73041 -38.29136 -37.80644 -35.79076 -34.27316 -33.65781 -31.61996 -30.81212 -30.20629 -28.70446 -27.95001 -26.64772 -25.60385 -24.60360 -23.66977 -21.95637 -21.53828 -20.39723 -19.65302 -19.26784 -18.57974 -17.90266 -17.88398 -17.02538 -16.82592 -16.46798 -16.16659 -16.07411 -15.72864 -15.50241 -15.45221 -15.18813 -14.85076 -14.77479 -14.50306 -14.01316 -13.81681 -13.76182 -13.65955 -13.22475 -13.09156 -13.05382 -12.83755 -12.80673 -12.73465 -12.64747 -12.48687 -12.18656 -12.13804 -11.97358 -11.85909 -11.62340 -11.43079 -11.00546 -10.76777 -9.62954 -9.53548 -9.05793 -8.94151 -7.92200 -5.17472 0.31340 0.34294 1.46054 1.47613 1.54838 1.66947 1.99529 2.09999 2.25060 2.56581 2.76037 3.12081 3.41263 3.51363 3.56276 3.74096 3.82958 3.92550 4.10549 4.13500 4.21955 4.23905 4.31757 4.37299 4.40123 4.45827 4.50791 4.60728 4.63449 4.66286 4.69910 4.74464 4.88462 4.92080 4.98377 5.19883 5.21732 5.23375 5.24550 5.37934 5.51886 5.52880 5.68624 5.74122 5.94041 6.30706 6.42485 6.49134 7.22719 7.38778 8.10766 8.40693 9.30098 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002808 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.619838 B = 9967.948381 C =10805.905499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.020 0.980 4 C 0.117 3.883 5 N -0.599 5.599 6 C 0.081 3.919 7 C 0.507 3.493 8 O -0.581 6.581 9 C -0.123 4.123 10 C 0.069 3.931 11 H 0.062 0.938 12 C 0.029 3.971 13 O -0.320 6.320 14 C 0.023 3.977 15 C -0.123 4.123 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.133 4.133 19 C 0.030 3.970 20 O -0.312 6.312 21 N -0.723 5.723 22 C -0.234 4.234 23 H 0.057 0.943 24 C -0.062 4.062 25 N -0.957 5.957 26 Si 0.959 3.041 27 H -0.288 1.288 28 H -0.294 1.294 29 H -0.281 1.281 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.150 0.850 41 H 0.096 0.904 42 H 0.149 0.851 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.131 0.869 46 H 0.379 0.621 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.132 3.563 18.795 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 H 0.038 0.962 4 C -0.006 4.006 5 N -0.330 5.330 6 C -0.061 4.061 7 C 0.296 3.704 8 O -0.462 6.462 9 C -0.163 4.163 10 C 0.012 3.988 11 H 0.080 0.920 12 C -0.046 4.046 13 O -0.234 6.234 14 C -0.022 4.022 15 C -0.141 4.141 16 C -0.132 4.132 17 C -0.130 4.130 18 C -0.152 4.152 19 C -0.015 4.015 20 O -0.227 6.227 21 N -0.366 5.366 22 C -0.366 4.366 23 H 0.075 0.925 24 C -0.255 4.255 25 N -0.608 5.608 26 Si 0.789 3.211 27 H -0.216 1.216 28 H -0.220 1.220 29 H -0.207 1.207 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.167 0.833 41 H 0.114 0.886 42 H 0.167 0.833 43 H 0.183 0.817 44 H 0.178 0.822 45 H 0.149 0.851 46 H 0.215 0.785 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.843 4.132 18.870 22.659 hybrid contribution -0.369 0.006 -1.645 1.686 sum 11.474 4.137 17.226 21.107 Atomic orbital electron populations 1.22225 0.97069 1.01491 1.00587 1.20748 0.93154 0.94694 0.86996 0.96222 1.21697 0.79749 1.01699 0.97490 1.47725 1.06521 1.21951 1.56798 1.21976 0.99270 0.87051 0.97810 1.20879 0.90448 0.81788 0.77259 1.90668 1.75949 1.32735 1.46822 1.21731 0.90925 0.99167 1.04442 1.22825 0.96052 0.99757 0.80135 0.91974 1.23877 0.90987 0.88124 1.01587 1.86264 1.63240 1.46685 1.27258 1.19283 0.93685 1.01950 0.87256 1.20799 1.00701 0.98959 0.93649 1.21328 0.96715 1.00453 0.94739 1.21303 0.94951 0.96084 1.00668 1.20748 1.01601 1.00692 0.92154 1.19370 0.91368 0.96849 0.93950 1.86356 1.59517 1.57889 1.18939 1.42521 1.78402 1.10268 1.05396 1.19397 1.34986 0.93552 0.88649 0.92474 1.25249 1.03090 0.96825 1.00316 1.69735 1.52476 1.09387 1.29207 0.85364 0.77601 0.77505 0.80600 1.21575 1.22037 1.20712 0.92554 0.91696 0.94569 0.88998 0.90145 0.90155 0.91735 0.90240 0.84354 0.84994 0.83272 0.88634 0.83349 0.81714 0.82204 0.85071 0.78547 0.93985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 9.49 71.98 0.68 -4.84 16 2 C 0.15 6.24 3.20 44.99 0.14 6.38 16 3 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 4 C 0.12 3.95 5.05 86.38 0.44 4.38 16 5 N -0.60 -19.35 2.73 -846.75 -2.31 -21.66 16 6 C 0.08 2.24 9.86 127.77 1.26 3.50 16 7 C 0.51 17.12 7.57 87.65 0.66 17.78 16 8 O -0.58 -24.30 15.05 9.24 0.14 -24.16 16 9 C -0.12 -2.97 3.98 29.85 0.12 -2.85 16 10 C 0.07 1.86 2.55 30.75 0.08 1.94 16 11 H 0.06 2.01 7.94 -2.39 -0.02 2.00 16 12 C 0.03 0.59 6.56 72.14 0.47 1.07 16 13 O -0.32 -8.14 10.42 -82.53 -0.86 -9.00 16 14 C 0.02 0.60 6.49 22.56 0.15 0.75 16 15 C -0.12 -2.48 9.96 22.37 0.22 -2.26 16 16 C -0.11 -1.82 10.04 22.26 0.22 -1.60 16 17 C -0.11 -1.96 10.04 22.26 0.22 -1.73 16 18 C -0.13 -3.23 9.96 22.37 0.22 -3.00 16 19 C 0.03 0.85 6.49 22.56 0.15 0.99 16 20 O -0.31 -9.72 9.40 -72.06 -0.68 -10.40 16 21 N -0.72 -34.38 4.57 -322.94 -1.47 -35.86 16 22 C -0.23 -12.67 9.93 84.03 0.83 -11.84 16 23 H 0.06 3.16 7.83 -2.91 -0.02 3.14 16 24 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 25 N -0.96 -54.21 13.06 21.65 0.28 -53.92 16 26 Si 0.96 45.23 29.55 68.60 2.03 47.26 16 27 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 28 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 29 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.09 2.71 8.07 -2.38 -0.02 2.69 16 34 H 0.08 2.71 7.42 -2.39 -0.02 2.69 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 2.19 5.62 -2.38 -0.01 2.18 16 37 H 0.08 1.98 6.44 -2.39 -0.02 1.96 16 38 H 0.14 2.80 7.40 -2.39 -0.02 2.78 16 39 H 0.13 2.41 8.11 -2.38 -0.02 2.39 16 40 H 0.15 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 45 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 46 H 0.38 18.33 5.33 -92.71 -0.49 17.84 16 47 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -73.31 384.41 3.95 -69.36 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.48 Total: 32.62 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 6.34 Total: 5.75 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -3.50 Total: -111.44 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.40 Total: -43.55 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -73.31 3.95 -69.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331456976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.305 kcal (2) G-P(sol) polarization free energy of solvation -73.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds