Wall clock time and date at job start Tue Mar 31 2020 18:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99817 * 2 1 4 4 C 1.52994 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47448 * 174.99681 * 4 3 2 6 6 C 1.53005 * 109.47019 * 54.99817 * 4 3 2 7 7 N 1.46500 * 109.47443 * 294.99864 * 4 3 2 8 8 C 1.34773 * 120.00432 * 204.99571 * 7 4 3 9 9 O 1.21353 * 120.00047 * 0.02562 * 8 7 4 10 10 C 1.49454 * 120.00135 * 179.72278 * 8 7 4 11 11 O 1.21343 * 119.99752 * 0.28157 * 10 8 7 12 12 N 1.34777 * 120.00164 * 180.27489 * 10 8 7 13 13 C 1.46499 * 120.00065 * 180.02562 * 12 10 8 14 14 H 1.08999 * 109.47228 * 325.00225 * 13 12 10 15 15 C 1.53000 * 109.46670 * 205.00290 * 13 12 10 16 16 C 1.50702 * 109.47574 * 65.00387 * 15 13 12 17 17 H 1.08007 * 119.99405 * 359.97438 * 16 15 13 18 18 C 1.37874 * 120.00285 * 179.97438 * 16 15 13 19 19 N 1.31511 * 119.99650 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99846 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47194 * 90.00393 * 20 18 16 22 22 H 1.48508 * 109.46995 * 210.00042 * 20 18 16 23 23 H 1.48497 * 109.47229 * 330.00189 * 20 18 16 24 24 C 1.50693 * 109.47022 * 85.00465 * 13 12 10 25 25 C 1.38239 * 120.00208 * 39.72703 * 24 13 12 26 26 C 1.38233 * 120.00040 * 179.78871 * 25 24 13 27 27 C 1.38238 * 119.99825 * 0.44398 * 26 25 24 28 28 C 1.38233 * 120.00257 * 359.80679 * 27 26 25 29 29 C 1.38234 * 119.99820 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.46888 * 60.00705 * 1 2 3 31 31 H 1.09009 * 109.46878 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47575 * 300.00232 * 1 2 3 33 33 H 1.09008 * 109.47048 * 59.99659 * 3 2 1 34 34 H 1.08995 * 109.47008 * 299.99814 * 3 2 1 35 35 H 1.09003 * 109.46937 * 60.00155 * 6 4 3 36 36 H 1.08998 * 109.47131 * 180.02562 * 6 4 3 37 37 H 1.08994 * 109.47191 * 300.00181 * 6 4 3 38 38 H 0.97001 * 119.99454 * 25.00306 * 7 4 3 39 39 H 0.97000 * 119.99555 * 0.02562 * 12 10 8 40 40 H 1.09010 * 109.46704 * 184.99858 * 15 13 12 41 41 H 1.08994 * 109.47787 * 304.99754 * 15 13 12 42 42 H 0.97008 * 119.99541 * 179.97438 * 19 18 16 43 43 H 1.08002 * 119.99879 * 359.97438 * 25 24 13 44 44 H 1.08002 * 120.00065 * 180.27147 * 26 25 24 45 45 H 1.08004 * 119.99659 * 179.83775 * 27 26 25 46 46 H 1.07995 * 119.99981 * 180.02562 * 28 27 26 47 47 H 1.07993 * 120.00095 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.9784 2.1766 -0.0890 6 6 3.9789 0.3194 -1.1807 7 7 3.9757 0.5646 1.2527 8 6 5.2195 0.7947 1.7179 9 8 5.9746 1.5161 1.0997 10 6 5.6665 0.1670 2.9984 11 8 4.9113 -0.5540 3.6166 12 7 6.9084 0.4016 3.4664 13 6 7.3468 -0.2142 4.7213 14 1 6.5044 -0.2739 5.4104 15 6 8.4569 0.6341 5.3450 16 6 7.9021 1.9802 5.7340 17 1 6.8619 2.2080 5.5539 18 6 8.7225 2.9208 6.3198 19 7 8.2384 4.0957 6.6587 20 14 10.5215 2.5264 6.6319 21 1 11.3276 2.9227 5.4493 22 1 10.9925 3.2746 7.8251 23 1 10.6747 1.0686 6.8693 24 6 7.8690 -1.6005 4.4450 25 6 8.6313 -1.8399 3.3168 26 6 9.1140 -3.1106 3.0657 27 6 8.8268 -4.1440 3.9379 28 6 8.0602 -3.9057 5.0633 29 6 7.5813 -2.6340 5.3168 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6884 1.8464 0.8900 34 1 1.6885 1.8463 -0.8900 35 1 3.6514 0.7809 -2.1123 36 1 5.0655 0.2331 -1.1800 37 1 3.5359 -0.6724 -1.0911 38 1 3.3719 -0.0118 1.7469 39 1 7.5120 0.9781 2.9722 40 1 8.8442 0.1309 6.2311 41 1 9.2617 0.7678 4.6223 42 1 8.8156 4.7574 7.0712 43 1 8.8521 -1.0334 2.6332 44 1 9.7131 -3.2967 2.1866 45 1 9.2017 -5.1373 3.7402 46 1 7.8363 -4.7129 5.7448 47 1 6.9828 -2.4478 6.1962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334577942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:27 Heat of formation + Delta-G solvation = -96.029937 kcal Electronic energy + Delta-G solvation = -28861.093631 eV Core-core repulsion = 24815.901638 eV Total energy + Delta-G solvation = -4045.191994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.47181 -39.31282 -38.48039 -37.80359 -35.68229 -35.12160 -32.67208 -31.27069 -31.19333 -30.57107 -29.34366 -27.64259 -26.10160 -25.66176 -24.03983 -22.35911 -21.79609 -21.19490 -20.28711 -19.81180 -18.25938 -17.18300 -17.07024 -16.49797 -16.34298 -16.11702 -15.63939 -15.45099 -15.21583 -14.87295 -14.63107 -14.33759 -14.00957 -13.83551 -13.41507 -13.35958 -13.11402 -12.93827 -12.69565 -12.59733 -12.42607 -12.38629 -12.10656 -11.97878 -11.49424 -11.34218 -11.24091 -11.22414 -11.11054 -10.77220 -10.50042 -10.28281 -10.03062 -9.89146 -9.38888 -9.24479 -9.19372 -8.69036 -8.62706 -8.60001 -8.34493 -6.10655 -4.10918 1.63153 1.68585 1.78187 2.65481 3.26946 3.35322 3.37876 3.40392 3.60747 3.93534 4.14865 4.38840 4.51291 4.77385 4.87222 4.95555 5.05851 5.09881 5.14702 5.16907 5.19981 5.23409 5.25380 5.35689 5.37827 5.41394 5.57005 5.78625 5.79466 5.79871 5.96192 6.13561 6.18188 6.27209 6.33077 6.37325 6.63499 6.72369 6.74405 6.77464 6.89329 7.00571 7.14885 7.27750 7.32098 7.63546 7.79442 8.08634 8.42347 8.44849 8.93897 9.49702 11.02108 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.003555 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.562447 B = 7873.772109 C = 9802.195708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.144 3.856 5 H 0.104 0.896 6 C -0.160 4.160 7 N -0.698 5.698 8 C 0.510 3.490 9 O -0.519 6.519 10 C 0.506 3.494 11 O -0.530 6.530 12 N -0.667 5.667 13 C 0.193 3.807 14 H 0.097 0.903 15 C -0.014 4.014 16 C -0.523 4.523 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.080 4.080 25 C -0.109 4.109 26 C -0.124 4.124 27 C -0.132 4.132 28 C -0.122 4.122 29 C -0.105 4.105 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.416 0.584 39 H 0.414 0.586 40 H 0.037 0.963 41 H 0.021 0.979 42 H 0.264 0.736 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 -11.226 -13.405 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.026 4.026 4 C 0.040 3.960 5 H 0.122 0.878 6 C -0.218 4.218 7 N -0.353 5.353 8 C 0.291 3.709 9 O -0.394 6.394 10 C 0.285 3.715 11 O -0.408 6.408 12 N -0.317 5.317 13 C 0.089 3.911 14 H 0.115 0.885 15 C -0.052 4.052 16 C -0.561 4.561 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.703 3.297 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.081 4.081 25 C -0.127 4.127 26 C -0.142 4.142 27 C -0.150 4.150 28 C -0.140 4.140 29 C -0.124 4.124 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.253 0.747 39 H 0.250 0.750 40 H 0.056 0.944 41 H 0.039 0.961 42 H 0.074 0.926 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.268 -11.182 -13.315 19.703 hybrid contribution 0.738 0.261 0.211 0.811 sum -8.529 -10.920 -13.104 19.072 Atomic orbital electron populations 1.22757 0.80766 1.02932 1.00047 1.87897 1.19877 1.27336 1.95432 1.22874 0.92734 0.85466 1.01524 1.21126 0.91975 0.98697 0.84206 0.87786 1.22084 1.02120 1.00894 0.96705 1.45766 1.14547 1.50373 1.24582 1.20392 0.82655 0.81606 0.86213 1.90751 1.53295 1.36400 1.58996 1.19920 0.83426 0.82282 0.85834 1.90717 1.53513 1.37639 1.58883 1.45750 1.13517 1.48010 1.24414 1.20124 0.99188 0.87422 0.84348 0.88506 1.19898 0.93119 0.95828 0.96313 1.20993 0.98546 0.96037 1.40548 0.90634 1.24974 0.98408 0.94799 0.94839 1.69905 1.36174 1.05562 1.41802 0.86847 0.85708 0.79060 0.78128 1.20165 1.21301 1.18891 1.20505 0.96755 0.96083 0.94768 1.20981 0.97586 0.96857 0.97321 1.21064 1.00440 0.93198 0.99495 1.21040 0.99757 0.98713 0.95456 1.21062 0.98600 0.96767 0.97612 1.21032 0.99597 0.92308 0.99450 0.94076 0.89504 0.93871 0.92166 0.91501 0.91682 0.91936 0.91335 0.74748 0.74980 0.94441 0.96053 0.92602 0.86335 0.86552 0.86684 0.86413 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.67 9.55 -35.23 -0.34 -4.01 16 3 C 0.05 0.44 5.68 37.15 0.21 0.65 16 4 C 0.14 1.56 2.98 -67.93 -0.20 1.36 16 5 H 0.10 1.17 7.58 -51.93 -0.39 0.78 16 6 C -0.16 -1.63 9.29 37.16 0.35 -1.28 16 7 N -0.70 -9.36 5.05 -54.23 -0.27 -9.63 16 8 C 0.51 8.46 7.85 -11.59 -0.09 8.37 16 9 O -0.52 -9.46 16.14 5.49 0.09 -9.38 16 10 C 0.51 9.34 7.85 -11.58 -0.09 9.25 16 11 O -0.53 -10.55 16.14 5.50 0.09 -10.46 16 12 N -0.67 -12.63 4.01 -55.37 -0.22 -12.85 16 13 C 0.19 3.82 2.12 -69.09 -0.15 3.67 16 14 H 0.10 2.06 7.44 -51.93 -0.39 1.67 16 15 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 16 C -0.52 -14.15 9.39 -34.44 -0.32 -14.48 16 17 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 20 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 24 C -0.08 -1.41 4.91 -104.63 -0.51 -1.92 16 25 C -0.11 -1.76 9.33 -39.58 -0.37 -2.13 16 26 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 27 C -0.13 -1.75 10.05 -39.58 -0.40 -2.14 16 28 C -0.12 -1.71 10.05 -39.58 -0.40 -2.10 16 29 C -0.11 -1.70 9.67 -39.58 -0.38 -2.09 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 38 H 0.42 5.45 7.85 -40.82 -0.32 5.13 16 39 H 0.41 7.74 8.07 -40.82 -0.33 7.41 16 40 H 0.04 0.85 7.20 -51.92 -0.37 0.48 16 41 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 43 H 0.12 1.84 7.71 -52.49 -0.40 1.43 16 44 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 45 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 46 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.12 1.87 8.04 -52.49 -0.42 1.45 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -32.48 398.81 -7.61 -40.09 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -7.23 Total: 12.20 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.84 Total: -2.15 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.28 Total: -48.66 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.16 Total: -23.84 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.48 -7.61 -40.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334577942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.940 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds