Wall clock time and date at job start Tue Mar 31 2020 18:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99817 * 2 1 4 4 C 1.52994 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47448 * 174.99681 * 4 3 2 6 6 C 1.53005 * 109.47019 * 54.99817 * 4 3 2 7 7 N 1.46500 * 109.47443 * 294.99864 * 4 3 2 8 8 C 1.34773 * 120.00432 * 204.99571 * 7 4 3 9 9 O 1.21353 * 120.00047 * 0.02562 * 8 7 4 10 10 C 1.49454 * 120.00135 * 179.72278 * 8 7 4 11 11 O 1.21343 * 119.99752 * 0.28157 * 10 8 7 12 12 N 1.34777 * 120.00164 * 180.27489 * 10 8 7 13 13 C 1.46499 * 120.00065 * 180.02562 * 12 10 8 14 14 H 1.08999 * 109.47228 * 325.00225 * 13 12 10 15 15 C 1.53000 * 109.46670 * 205.00290 * 13 12 10 16 16 C 1.50702 * 109.47574 * 65.00387 * 15 13 12 17 17 H 1.08007 * 119.99405 * 359.97438 * 16 15 13 18 18 C 1.37874 * 120.00285 * 179.97438 * 16 15 13 19 19 N 1.31511 * 119.99650 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99846 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47194 * 90.00393 * 20 18 16 22 22 H 1.48508 * 109.46995 * 210.00042 * 20 18 16 23 23 H 1.48497 * 109.47229 * 330.00189 * 20 18 16 24 24 C 1.50693 * 109.47022 * 85.00465 * 13 12 10 25 25 C 1.38239 * 120.00208 * 39.72703 * 24 13 12 26 26 C 1.38233 * 120.00040 * 179.78871 * 25 24 13 27 27 C 1.38238 * 119.99825 * 0.44398 * 26 25 24 28 28 C 1.38233 * 120.00257 * 359.80679 * 27 26 25 29 29 C 1.38234 * 119.99820 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.46888 * 60.00705 * 1 2 3 31 31 H 1.09009 * 109.46878 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47575 * 300.00232 * 1 2 3 33 33 H 1.09008 * 109.47048 * 59.99659 * 3 2 1 34 34 H 1.08995 * 109.47008 * 299.99814 * 3 2 1 35 35 H 1.09003 * 109.46937 * 60.00155 * 6 4 3 36 36 H 1.08998 * 109.47131 * 180.02562 * 6 4 3 37 37 H 1.08994 * 109.47191 * 300.00181 * 6 4 3 38 38 H 0.97001 * 119.99454 * 25.00306 * 7 4 3 39 39 H 0.97000 * 119.99555 * 0.02562 * 12 10 8 40 40 H 1.09010 * 109.46704 * 184.99858 * 15 13 12 41 41 H 1.08994 * 109.47787 * 304.99754 * 15 13 12 42 42 H 0.97008 * 119.99541 * 179.97438 * 19 18 16 43 43 H 1.08002 * 119.99879 * 359.97438 * 25 24 13 44 44 H 1.08002 * 120.00065 * 180.27147 * 26 25 24 45 45 H 1.08004 * 119.99659 * 179.83775 * 27 26 25 46 46 H 1.07995 * 119.99981 * 180.02562 * 28 27 26 47 47 H 1.07993 * 120.00095 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.9784 2.1766 -0.0890 6 6 3.9789 0.3194 -1.1807 7 7 3.9757 0.5646 1.2527 8 6 5.2195 0.7947 1.7179 9 8 5.9746 1.5161 1.0997 10 6 5.6665 0.1670 2.9984 11 8 4.9113 -0.5540 3.6166 12 7 6.9084 0.4016 3.4664 13 6 7.3468 -0.2142 4.7213 14 1 6.5044 -0.2739 5.4104 15 6 8.4569 0.6341 5.3450 16 6 7.9021 1.9802 5.7340 17 1 6.8619 2.2080 5.5539 18 6 8.7225 2.9208 6.3198 19 7 8.2384 4.0957 6.6587 20 14 10.5215 2.5264 6.6319 21 1 11.3276 2.9227 5.4493 22 1 10.9925 3.2746 7.8251 23 1 10.6747 1.0686 6.8693 24 6 7.8690 -1.6005 4.4450 25 6 8.6313 -1.8399 3.3168 26 6 9.1140 -3.1106 3.0657 27 6 8.8268 -4.1440 3.9379 28 6 8.0602 -3.9057 5.0633 29 6 7.5813 -2.6340 5.3168 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6884 1.8464 0.8900 34 1 1.6885 1.8463 -0.8900 35 1 3.6514 0.7809 -2.1123 36 1 5.0655 0.2331 -1.1800 37 1 3.5359 -0.6724 -1.0911 38 1 3.3719 -0.0118 1.7469 39 1 7.5120 0.9781 2.9722 40 1 8.8442 0.1309 6.2311 41 1 9.2617 0.7678 4.6223 42 1 8.8156 4.7574 7.0712 43 1 8.8521 -1.0334 2.6332 44 1 9.7131 -3.2967 2.1866 45 1 9.2017 -5.1373 3.7402 46 1 7.8363 -4.7129 5.7448 47 1 6.9828 -2.4478 6.1962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334577942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:27 Heat of formation + Delta-G solvation = -118.628244 kcal Electronic energy + Delta-G solvation = -28862.073567 eV Core-core repulsion = 24815.901638 eV Total energy + Delta-G solvation = -4046.171930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84893 -40.53409 -39.53941 -38.89315 -37.10656 -36.29579 -34.71489 -32.72379 -32.23697 -31.71613 -31.00515 -28.29708 -27.41255 -26.63953 -25.45360 -23.63356 -23.28728 -22.28093 -21.56491 -21.24690 -19.63530 -19.06793 -18.21639 -17.69367 -17.47045 -17.03325 -16.83998 -16.69998 -16.32222 -16.24539 -16.01520 -15.64530 -15.24721 -15.05397 -14.90748 -14.57322 -14.30543 -14.21384 -14.12217 -13.95439 -13.62859 -13.54119 -13.22255 -13.05669 -12.82640 -12.73792 -12.50981 -12.34305 -12.12890 -12.05828 -11.98568 -11.81172 -11.76197 -11.47791 -10.80262 -10.72271 -10.60877 -10.36231 -10.20703 -9.77460 -9.57864 -8.28849 -6.34017 0.35050 0.46297 0.54417 1.35019 1.37793 1.39036 1.49862 2.15457 2.35419 2.61071 2.81845 2.95693 3.07382 3.46363 3.73863 3.86395 3.99673 4.01053 4.19393 4.28670 4.29642 4.33510 4.44057 4.48540 4.52424 4.58545 4.63154 4.70186 4.74233 4.74759 4.90917 4.92164 4.95631 5.11184 5.15245 5.19062 5.22130 5.32992 5.39558 5.54106 5.63331 5.63750 5.74967 5.97543 6.15884 6.17392 6.23273 6.38572 6.72024 6.74374 6.96808 7.30007 8.87533 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.003555 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.562447 B = 7873.772109 C = 9802.195708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.056 3.944 4 C 0.136 3.864 5 H 0.100 0.900 6 C -0.152 4.152 7 N -0.683 5.683 8 C 0.513 3.487 9 O -0.540 6.540 10 C 0.501 3.499 11 O -0.549 6.549 12 N -0.668 5.668 13 C 0.202 3.798 14 H 0.071 0.929 15 C -0.005 4.005 16 C -0.524 4.524 17 H 0.032 0.968 18 C 0.011 3.989 19 N -0.947 5.947 20 Si 0.945 3.055 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.246 1.246 24 C -0.103 4.103 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.125 4.125 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.418 0.582 39 H 0.413 0.587 40 H 0.040 0.960 41 H 0.032 0.968 42 H 0.266 0.734 43 H 0.117 0.883 44 H 0.145 0.855 45 H 0.152 0.848 46 H 0.147 0.853 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.573 -13.635 -14.864 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C -0.021 4.021 4 C 0.033 3.967 5 H 0.118 0.882 6 C -0.210 4.210 7 N -0.336 5.336 8 C 0.293 3.707 9 O -0.417 6.417 10 C 0.282 3.718 11 O -0.427 6.427 12 N -0.318 5.318 13 C 0.098 3.902 14 H 0.089 0.911 15 C -0.043 4.043 16 C -0.561 4.561 17 H 0.050 0.950 18 C -0.186 4.186 19 N -0.587 5.587 20 Si 0.769 3.231 21 H -0.191 1.191 22 H -0.212 1.212 23 H -0.169 1.169 24 C -0.104 4.104 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.142 4.142 28 C -0.139 4.139 29 C -0.143 4.143 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.255 0.745 39 H 0.250 0.750 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.135 0.865 44 H 0.162 0.838 45 H 0.169 0.831 46 H 0.165 0.835 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.434 -13.615 -14.796 21.804 hybrid contribution 0.318 0.961 0.630 1.192 sum -8.116 -12.655 -14.166 20.656 Atomic orbital electron populations 1.22915 0.79316 1.03776 1.00951 1.87862 1.21484 1.27705 1.95635 1.22849 0.90760 0.85576 1.02881 1.21413 0.93865 0.98374 0.83023 0.88171 1.22018 1.00798 1.00800 0.97419 1.45836 1.13173 1.49455 1.25178 1.20036 0.83602 0.81584 0.85449 1.90737 1.54093 1.37549 1.59353 1.20318 0.82989 0.81999 0.86493 1.90691 1.53830 1.38525 1.59690 1.45747 1.13890 1.48019 1.24150 1.19793 0.97333 0.88888 0.84161 0.91093 1.19755 0.94127 0.93695 0.96729 1.21203 0.96741 0.98261 1.39944 0.94973 1.25906 1.03581 0.94455 0.94672 1.70063 1.38184 1.06974 1.43456 0.85731 0.79409 0.79794 0.78178 1.19057 1.21223 1.16901 1.20294 0.98739 0.94840 0.96511 1.21093 0.97988 0.98193 0.96893 1.21420 0.99963 0.92289 1.00504 1.21501 0.98276 1.00098 0.94327 1.21412 0.97774 0.96324 0.98358 1.21193 1.00371 0.93299 0.99448 0.92481 0.88794 0.93634 0.92157 0.88745 0.89170 0.93801 0.91644 0.74504 0.75028 0.94201 0.94933 0.92499 0.86481 0.83771 0.83073 0.83546 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.14 9.55 -148.98 -1.42 -8.57 16 3 C 0.06 0.88 5.68 71.98 0.41 1.29 16 4 C 0.14 2.87 2.98 44.99 0.13 3.00 16 5 H 0.10 2.22 7.58 -2.39 -0.02 2.20 16 6 C -0.15 -2.94 9.29 71.98 0.67 -2.27 16 7 N -0.68 -18.52 5.05 -443.86 -2.24 -20.76 16 8 C 0.51 17.55 7.85 87.27 0.69 18.23 16 9 O -0.54 -20.25 16.14 -3.26 -0.05 -20.31 16 10 C 0.50 19.38 7.85 87.27 0.68 20.06 16 11 O -0.55 -22.77 16.14 -3.23 -0.05 -22.82 16 12 N -0.67 -26.52 4.01 -447.45 -1.80 -28.32 16 13 C 0.20 8.32 2.12 44.24 0.09 8.41 16 14 H 0.07 3.23 7.44 -2.39 -0.02 3.21 16 15 C -0.01 -0.25 3.56 29.85 0.11 -0.14 16 16 C -0.52 -29.48 9.39 25.60 0.24 -29.24 16 17 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 18 C 0.01 0.65 5.47 84.65 0.46 1.11 16 19 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16 20 Si 0.95 43.51 27.47 68.60 1.88 45.40 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 24 C -0.10 -3.62 4.91 -19.87 -0.10 -3.72 16 25 C -0.12 -3.86 9.33 22.27 0.21 -3.65 16 26 C -0.12 -3.12 10.05 22.27 0.22 -2.89 16 27 C -0.12 -2.82 10.05 22.27 0.22 -2.59 16 28 C -0.12 -3.04 10.05 22.27 0.22 -2.81 16 29 C -0.12 -3.95 9.67 22.27 0.22 -3.74 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 1.31 7.56 -2.39 -0.02 1.29 16 38 H 0.42 11.07 7.85 -92.71 -0.73 10.34 16 39 H 0.41 16.22 8.07 -92.71 -0.75 15.47 16 40 H 0.04 1.81 7.20 -2.38 -0.02 1.79 16 41 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 42 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 43 H 0.12 3.58 7.71 -2.91 -0.02 3.56 16 44 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 45 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 46 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 47 H 0.12 3.73 8.04 -2.91 -0.02 3.70 16 Total: -1.00 -72.88 398.81 1.80 -71.08 By element: Atomic # 1 Polarization: 40.88 SS G_CDS: -0.55 Total: 40.34 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.73 Total: 2.61 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -3.74 Total: -107.73 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -1.53 Total: -51.69 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal Total: -72.88 1.80 -71.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334577942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.546 kcal (2) G-P(sol) polarization free energy of solvation -72.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds