Wall clock time and date at job start Tue Mar 31 2020 18:02:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42900 * 113.99817 * 2 1
4 4 C 1.52994 * 109.47319 * 179.97438 * 3 2 1
5 5 H 1.09002 * 109.47448 * 174.99681 * 4 3 2
6 6 C 1.53005 * 109.47019 * 54.99817 * 4 3 2
7 7 N 1.46500 * 109.47443 * 294.99864 * 4 3 2
8 8 C 1.34773 * 120.00432 * 204.99571 * 7 4 3
9 9 O 1.21353 * 120.00047 * 0.02562 * 8 7 4
10 10 C 1.49454 * 120.00135 * 179.72278 * 8 7 4
11 11 O 1.21343 * 119.99752 * 0.28157 * 10 8 7
12 12 N 1.34777 * 120.00164 * 180.27489 * 10 8 7
13 13 C 1.46499 * 120.00065 * 180.02562 * 12 10 8
14 14 H 1.08999 * 109.47228 * 325.00225 * 13 12 10
15 15 C 1.53000 * 109.46670 * 205.00290 * 13 12 10
16 16 C 1.50702 * 109.47574 * 65.00387 * 15 13 12
17 17 H 1.08007 * 119.99405 * 359.97438 * 16 15 13
18 18 C 1.37874 * 120.00285 * 179.97438 * 16 15 13
19 19 N 1.31511 * 119.99650 * 179.97438 * 18 16 15
20 20 Si 1.86799 * 119.99846 * 359.97438 * 18 16 15
21 21 H 1.48501 * 109.47194 * 90.00393 * 20 18 16
22 22 H 1.48508 * 109.46995 * 210.00042 * 20 18 16
23 23 H 1.48497 * 109.47229 * 330.00189 * 20 18 16
24 24 C 1.50693 * 109.47022 * 85.00465 * 13 12 10
25 25 C 1.38239 * 120.00208 * 39.72703 * 24 13 12
26 26 C 1.38233 * 120.00040 * 179.78871 * 25 24 13
27 27 C 1.38238 * 119.99825 * 0.44398 * 26 25 24
28 28 C 1.38233 * 120.00257 * 359.80679 * 27 26 25
29 29 C 1.38234 * 119.99820 * 359.97438 * 28 27 26
30 30 H 1.09001 * 109.46888 * 60.00705 * 1 2 3
31 31 H 1.09009 * 109.46878 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47575 * 300.00232 * 1 2 3
33 33 H 1.09008 * 109.47048 * 59.99659 * 3 2 1
34 34 H 1.08995 * 109.47008 * 299.99814 * 3 2 1
35 35 H 1.09003 * 109.46937 * 60.00155 * 6 4 3
36 36 H 1.08998 * 109.47131 * 180.02562 * 6 4 3
37 37 H 1.08994 * 109.47191 * 300.00181 * 6 4 3
38 38 H 0.97001 * 119.99454 * 25.00306 * 7 4 3
39 39 H 0.97000 * 119.99555 * 0.02562 * 12 10 8
40 40 H 1.09010 * 109.46704 * 184.99858 * 15 13 12
41 41 H 1.08994 * 109.47787 * 304.99754 * 15 13 12
42 42 H 0.97008 * 119.99541 * 179.97438 * 19 18 16
43 43 H 1.08002 * 119.99879 * 359.97438 * 25 24 13
44 44 H 1.08002 * 120.00065 * 180.27147 * 26 25 24
45 45 H 1.08004 * 119.99659 * 179.83775 * 27 26 25
46 46 H 1.07995 * 119.99981 * 180.02562 * 28 27 26
47 47 H 1.07993 * 120.00095 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5353 1.1848 0.0006
5 1 3.9784 2.1766 -0.0890
6 6 3.9789 0.3194 -1.1807
7 7 3.9757 0.5646 1.2527
8 6 5.2195 0.7947 1.7179
9 8 5.9746 1.5161 1.0997
10 6 5.6665 0.1670 2.9984
11 8 4.9113 -0.5540 3.6166
12 7 6.9084 0.4016 3.4664
13 6 7.3468 -0.2142 4.7213
14 1 6.5044 -0.2739 5.4104
15 6 8.4569 0.6341 5.3450
16 6 7.9021 1.9802 5.7340
17 1 6.8619 2.2080 5.5539
18 6 8.7225 2.9208 6.3198
19 7 8.2384 4.0957 6.6587
20 14 10.5215 2.5264 6.6319
21 1 11.3276 2.9227 5.4493
22 1 10.9925 3.2746 7.8251
23 1 10.6747 1.0686 6.8693
24 6 7.8690 -1.6005 4.4450
25 6 8.6313 -1.8399 3.3168
26 6 9.1140 -3.1106 3.0657
27 6 8.8268 -4.1440 3.9379
28 6 8.0602 -3.9057 5.0633
29 6 7.5813 -2.6340 5.3168
30 1 -0.3633 0.5137 -0.8901
31 1 -0.3633 -1.0278 0.0005
32 1 -0.3634 0.5138 0.8899
33 1 1.6884 1.8464 0.8900
34 1 1.6885 1.8463 -0.8900
35 1 3.6514 0.7809 -2.1123
36 1 5.0655 0.2331 -1.1800
37 1 3.5359 -0.6724 -1.0911
38 1 3.3719 -0.0118 1.7469
39 1 7.5120 0.9781 2.9722
40 1 8.8442 0.1309 6.2311
41 1 9.2617 0.7678 4.6223
42 1 8.8156 4.7574 7.0712
43 1 8.8521 -1.0334 2.6332
44 1 9.7131 -3.2967 2.1866
45 1 9.2017 -5.1373 3.7402
46 1 7.8363 -4.7129 5.7448
47 1 6.9828 -2.4478 6.1962
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001334577942.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:02:27
Heat of formation + Delta-G solvation = -118.628244 kcal
Electronic energy + Delta-G solvation = -28862.073567 eV
Core-core repulsion = 24815.901638 eV
Total energy + Delta-G solvation = -4046.171930 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 334.173 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.84893 -40.53409 -39.53941 -38.89315 -37.10656 -36.29579 -34.71489 -32.72379
-32.23697 -31.71613 -31.00515 -28.29708 -27.41255 -26.63953 -25.45360 -23.63356
-23.28728 -22.28093 -21.56491 -21.24690 -19.63530 -19.06793 -18.21639 -17.69367
-17.47045 -17.03325 -16.83998 -16.69998 -16.32222 -16.24539 -16.01520 -15.64530
-15.24721 -15.05397 -14.90748 -14.57322 -14.30543 -14.21384 -14.12217 -13.95439
-13.62859 -13.54119 -13.22255 -13.05669 -12.82640 -12.73792 -12.50981 -12.34305
-12.12890 -12.05828 -11.98568 -11.81172 -11.76197 -11.47791 -10.80262 -10.72271
-10.60877 -10.36231 -10.20703 -9.77460 -9.57864 -8.28849 -6.34017 0.35050
0.46297 0.54417 1.35019 1.37793 1.39036 1.49862 2.15457 2.35419
2.61071 2.81845 2.95693 3.07382 3.46363 3.73863 3.86395 3.99673
4.01053 4.19393 4.28670 4.29642 4.33510 4.44057 4.48540 4.52424
4.58545 4.63154 4.70186 4.74233 4.74759 4.90917 4.92164 4.95631
5.11184 5.15245 5.19062 5.22130 5.32992 5.39558 5.54106 5.63331
5.63750 5.74967 5.97543 6.15884 6.17392 6.23273 6.38572 6.72024
6.74374 6.96808 7.30007 8.87533
Molecular weight = 334.17amu
Principal moments of inertia in cm(-1)
A = 0.009462 B = 0.003555 C = 0.002856
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2958.562447 B = 7873.772109 C = 9802.195708
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.407 6.407
3 C 0.056 3.944
4 C 0.136 3.864
5 H 0.100 0.900
6 C -0.152 4.152
7 N -0.683 5.683
8 C 0.513 3.487
9 O -0.540 6.540
10 C 0.501 3.499
11 O -0.549 6.549
12 N -0.668 5.668
13 C 0.202 3.798
14 H 0.071 0.929
15 C -0.005 4.005
16 C -0.524 4.524
17 H 0.032 0.968
18 C 0.011 3.989
19 N -0.947 5.947
20 Si 0.945 3.055
21 H -0.266 1.266
22 H -0.286 1.286
23 H -0.246 1.246
24 C -0.103 4.103
25 C -0.123 4.123
26 C -0.124 4.124
27 C -0.124 4.124
28 C -0.121 4.121
29 C -0.125 4.125
30 H 0.057 0.943
31 H 0.094 0.906
32 H 0.045 0.955
33 H 0.060 0.940
34 H 0.095 0.905
35 H 0.090 0.910
36 H 0.043 0.957
37 H 0.065 0.935
38 H 0.418 0.582
39 H 0.413 0.587
40 H 0.040 0.960
41 H 0.032 0.968
42 H 0.266 0.734
43 H 0.117 0.883
44 H 0.145 0.855
45 H 0.152 0.848
46 H 0.147 0.853
47 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.573 -13.635 -14.864 21.917
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.327 6.327
3 C -0.021 4.021
4 C 0.033 3.967
5 H 0.118 0.882
6 C -0.210 4.210
7 N -0.336 5.336
8 C 0.293 3.707
9 O -0.417 6.417
10 C 0.282 3.718
11 O -0.427 6.427
12 N -0.318 5.318
13 C 0.098 3.902
14 H 0.089 0.911
15 C -0.043 4.043
16 C -0.561 4.561
17 H 0.050 0.950
18 C -0.186 4.186
19 N -0.587 5.587
20 Si 0.769 3.231
21 H -0.191 1.191
22 H -0.212 1.212
23 H -0.169 1.169
24 C -0.104 4.104
25 C -0.142 4.142
26 C -0.142 4.142
27 C -0.142 4.142
28 C -0.139 4.139
29 C -0.143 4.143
30 H 0.075 0.925
31 H 0.112 0.888
32 H 0.064 0.936
33 H 0.078 0.922
34 H 0.113 0.887
35 H 0.108 0.892
36 H 0.062 0.938
37 H 0.084 0.916
38 H 0.255 0.745
39 H 0.250 0.750
40 H 0.058 0.942
41 H 0.051 0.949
42 H 0.075 0.925
43 H 0.135 0.865
44 H 0.162 0.838
45 H 0.169 0.831
46 H 0.165 0.835
47 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -8.434 -13.615 -14.796 21.804
hybrid contribution 0.318 0.961 0.630 1.192
sum -8.116 -12.655 -14.166 20.656
Atomic orbital electron populations
1.22915 0.79316 1.03776 1.00951 1.87862 1.21484 1.27705 1.95635
1.22849 0.90760 0.85576 1.02881 1.21413 0.93865 0.98374 0.83023
0.88171 1.22018 1.00798 1.00800 0.97419 1.45836 1.13173 1.49455
1.25178 1.20036 0.83602 0.81584 0.85449 1.90737 1.54093 1.37549
1.59353 1.20318 0.82989 0.81999 0.86493 1.90691 1.53830 1.38525
1.59690 1.45747 1.13890 1.48019 1.24150 1.19793 0.97333 0.88888
0.84161 0.91093 1.19755 0.94127 0.93695 0.96729 1.21203 0.96741
0.98261 1.39944 0.94973 1.25906 1.03581 0.94455 0.94672 1.70063
1.38184 1.06974 1.43456 0.85731 0.79409 0.79794 0.78178 1.19057
1.21223 1.16901 1.20294 0.98739 0.94840 0.96511 1.21093 0.97988
0.98193 0.96893 1.21420 0.99963 0.92289 1.00504 1.21501 0.98276
1.00098 0.94327 1.21412 0.97774 0.96324 0.98358 1.21193 1.00371
0.93299 0.99448 0.92481 0.88794 0.93634 0.92157 0.88745 0.89170
0.93801 0.91644 0.74504 0.75028 0.94201 0.94933 0.92499 0.86481
0.83771 0.83073 0.83546 0.86173
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.31 11.01 113.37 1.25 1.56 16
2 O -0.41 -7.14 9.55 -148.98 -1.42 -8.57 16
3 C 0.06 0.88 5.68 71.98 0.41 1.29 16
4 C 0.14 2.87 2.98 44.99 0.13 3.00 16
5 H 0.10 2.22 7.58 -2.39 -0.02 2.20 16
6 C -0.15 -2.94 9.29 71.98 0.67 -2.27 16
7 N -0.68 -18.52 5.05 -443.86 -2.24 -20.76 16
8 C 0.51 17.55 7.85 87.27 0.69 18.23 16
9 O -0.54 -20.25 16.14 -3.26 -0.05 -20.31 16
10 C 0.50 19.38 7.85 87.27 0.68 20.06 16
11 O -0.55 -22.77 16.14 -3.23 -0.05 -22.82 16
12 N -0.67 -26.52 4.01 -447.45 -1.80 -28.32 16
13 C 0.20 8.32 2.12 44.24 0.09 8.41 16
14 H 0.07 3.23 7.44 -2.39 -0.02 3.21 16
15 C -0.01 -0.25 3.56 29.85 0.11 -0.14 16
16 C -0.52 -29.48 9.39 25.60 0.24 -29.24 16
17 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16
18 C 0.01 0.65 5.47 84.65 0.46 1.11 16
19 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16
20 Si 0.95 43.51 27.47 68.60 1.88 45.40 16
21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16
22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16
23 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16
24 C -0.10 -3.62 4.91 -19.87 -0.10 -3.72 16
25 C -0.12 -3.86 9.33 22.27 0.21 -3.65 16
26 C -0.12 -3.12 10.05 22.27 0.22 -2.89 16
27 C -0.12 -2.82 10.05 22.27 0.22 -2.59 16
28 C -0.12 -3.04 10.05 22.27 0.22 -2.81 16
29 C -0.12 -3.95 9.67 22.27 0.22 -3.74 16
30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16
31 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16
32 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16
33 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16
34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16
37 H 0.06 1.31 7.56 -2.39 -0.02 1.29 16
38 H 0.42 11.07 7.85 -92.71 -0.73 10.34 16
39 H 0.41 16.22 8.07 -92.71 -0.75 15.47 16
40 H 0.04 1.81 7.20 -2.38 -0.02 1.79 16
41 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16
42 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16
43 H 0.12 3.58 7.71 -2.91 -0.02 3.56 16
44 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16
45 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16
46 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16
47 H 0.12 3.73 8.04 -2.91 -0.02 3.70 16
Total: -1.00 -72.88 398.81 1.80 -71.08
By element:
Atomic # 1 Polarization: 40.88 SS G_CDS: -0.55 Total: 40.34 kcal
Atomic # 6 Polarization: -3.12 SS G_CDS: 5.73 Total: 2.61 kcal
Atomic # 7 Polarization: -103.99 SS G_CDS: -3.74 Total: -107.73 kcal
Atomic # 8 Polarization: -50.16 SS G_CDS: -1.53 Total: -51.69 kcal
Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal
Total: -72.88 1.80 -71.08 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001334577942.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.546 kcal
(2) G-P(sol) polarization free energy of solvation -72.882 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.428 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.628 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds