Wall clock time and date at job start Tue Mar 31 2020 18:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42894 * 114.00307 * 2 1 4 4 C 1.53006 * 109.47378 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46884 * 175.00525 * 4 3 2 6 6 C 1.52997 * 109.47127 * 54.99773 * 4 3 2 7 7 N 1.46497 * 109.46631 * 294.99989 * 4 3 2 8 8 C 1.34784 * 120.00075 * 204.99770 * 7 4 3 9 9 O 1.21350 * 119.99527 * 0.02562 * 8 7 4 10 10 C 1.49443 * 120.00449 * 180.02562 * 8 7 4 11 11 O 1.21352 * 119.99782 * 359.97438 * 10 8 7 12 12 N 1.34773 * 120.00090 * 180.02562 * 10 8 7 13 13 C 1.46500 * 120.00050 * 179.97438 * 12 10 8 14 14 H 1.08996 * 109.47197 * 34.99643 * 13 12 10 15 15 C 1.52996 * 109.47368 * 155.00010 * 13 12 10 16 16 C 1.50695 * 109.47110 * 295.00159 * 15 13 12 17 17 H 1.08001 * 120.00328 * 359.97438 * 16 15 13 18 18 C 1.37884 * 120.00169 * 179.97438 * 16 15 13 19 19 N 1.31513 * 119.99775 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99858 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47449 * 89.99629 * 20 18 16 22 22 H 1.48502 * 109.46929 * 210.00082 * 20 18 16 23 23 H 1.48502 * 109.46884 * 329.99675 * 20 18 16 24 24 C 1.50703 * 109.47155 * 274.99966 * 13 12 10 25 25 C 1.38233 * 120.00068 * 319.72404 * 24 13 12 26 26 C 1.38241 * 120.00200 * 179.80528 * 25 24 13 27 27 C 1.38236 * 119.99547 * 0.40439 * 26 25 24 28 28 C 1.38226 * 120.00210 * 359.85232 * 27 26 25 29 29 C 1.38234 * 119.99886 * 140.00036 * 24 13 12 30 30 H 1.09007 * 109.47106 * 60.00217 * 1 2 3 31 31 H 1.09003 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47374 * 300.00219 * 1 2 3 33 33 H 1.09000 * 109.47520 * 59.99972 * 3 2 1 34 34 H 1.08995 * 109.47360 * 299.99952 * 3 2 1 35 35 H 1.09002 * 109.47153 * 180.02562 * 6 4 3 36 36 H 1.09001 * 109.46832 * 60.00321 * 6 4 3 37 37 H 1.09004 * 109.47261 * 300.00303 * 6 4 3 38 38 H 0.96996 * 120.00792 * 25.00239 * 7 4 3 39 39 H 0.96994 * 120.00306 * 359.97438 * 12 10 8 40 40 H 1.09000 * 109.47097 * 55.00110 * 15 13 12 41 41 H 1.08997 * 109.47293 * 174.99770 * 15 13 12 42 42 H 0.97002 * 119.99781 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.00247 * 0.02562 * 25 24 13 44 44 H 1.08003 * 120.00003 * 180.23017 * 26 25 24 45 45 H 1.07999 * 119.99685 * 179.82611 * 27 26 25 46 46 H 1.08001 * 120.00435 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.00225 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9784 2.1764 -0.0901 6 6 3.9781 0.3197 -1.1826 7 7 3.9766 0.5639 1.2509 8 6 5.2208 0.7938 1.7152 9 8 5.9755 1.5153 1.0968 10 6 5.6711 0.1602 2.9916 11 8 4.9162 -0.5610 3.6103 12 7 6.9151 0.3905 3.4561 13 6 7.3563 -0.2302 4.7077 14 1 6.9136 -1.2221 4.7971 15 6 8.8815 -0.3505 4.7074 16 6 9.3102 -1.3001 3.6187 17 1 8.5690 -1.7711 2.9900 18 6 10.6489 -1.5677 3.4250 19 7 11.0230 -2.3968 2.4751 20 14 11.9310 -0.7537 4.5127 21 1 12.1870 -1.6076 5.7002 22 1 13.1914 -0.5799 3.7469 23 1 11.4337 0.5737 4.9554 24 6 6.9198 0.6215 5.8719 25 6 6.9993 1.9990 5.7887 26 6 6.5952 2.7803 6.8552 27 6 6.1194 2.1838 8.0078 28 6 6.0449 0.8061 8.0930 29 6 6.4453 0.0249 7.0251 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 5.0646 0.2332 -1.1828 36 1 3.6498 0.7815 -2.1137 37 1 3.5350 -0.6722 -1.0930 38 1 3.3733 -0.0126 1.7454 39 1 7.5183 0.9672 2.9619 40 1 9.3233 0.6299 4.5292 41 1 9.2162 -0.7297 5.6729 42 1 11.9647 -2.5854 2.3391 43 1 7.3738 2.4650 4.8893 44 1 6.6538 3.8567 6.7888 45 1 5.8063 2.7941 8.8420 46 1 5.6736 0.3400 8.9936 47 1 6.3870 -1.0515 7.0916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334577943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:30 Heat of formation + Delta-G solvation = -95.825890 kcal Electronic energy + Delta-G solvation = -28854.132546 eV Core-core repulsion = 24808.949401 eV Total energy + Delta-G solvation = -4045.183145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.47097 -39.31849 -38.48753 -37.80690 -35.68150 -35.11876 -32.66409 -31.27439 -31.18301 -30.58295 -29.34345 -27.62762 -26.09498 -25.66501 -24.04054 -22.37035 -21.79849 -21.19019 -20.28574 -19.81507 -18.25848 -17.16208 -17.09817 -16.50293 -16.33934 -16.11925 -15.67364 -15.35974 -15.30621 -14.84647 -14.62862 -14.34606 -14.00247 -13.83640 -13.41964 -13.31789 -13.12281 -12.93598 -12.69961 -12.63176 -12.44006 -12.36154 -12.08470 -11.84758 -11.49481 -11.38851 -11.24648 -11.19033 -11.12981 -10.76154 -10.63534 -10.20522 -10.04049 -9.85728 -9.37384 -9.24865 -9.19460 -8.69542 -8.62541 -8.60074 -8.35646 -6.09613 -4.09984 1.61932 1.67238 1.78179 2.65320 3.27531 3.35842 3.37866 3.40600 3.60246 3.93170 4.14095 4.39452 4.51205 4.76365 4.87178 4.94239 5.04301 5.08223 5.13419 5.15758 5.20171 5.23317 5.25207 5.36608 5.37738 5.40362 5.61190 5.77569 5.78975 5.86330 5.95829 6.17781 6.21542 6.26223 6.35195 6.37114 6.62842 6.71263 6.73078 6.77288 6.89179 7.00450 7.14767 7.26541 7.32049 7.64216 7.79595 8.08727 8.43112 8.45075 8.95173 9.50523 11.03144 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009384 B = 0.003605 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.945297 B = 7764.157594 C = 9895.445593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.052 3.948 4 C 0.145 3.855 5 H 0.103 0.897 6 C -0.162 4.162 7 N -0.698 5.698 8 C 0.510 3.490 9 O -0.519 6.519 10 C 0.506 3.494 11 O -0.530 6.530 12 N -0.666 5.666 13 C 0.193 3.807 14 H 0.097 0.903 15 C -0.014 4.014 16 C -0.524 4.524 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.876 3.124 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.080 4.080 25 C -0.109 4.109 26 C -0.124 4.124 27 C -0.132 4.132 28 C -0.122 4.122 29 C -0.105 4.105 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.416 0.584 39 H 0.414 0.586 40 H 0.026 0.974 41 H 0.033 0.967 42 H 0.264 0.736 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.582 10.153 0.308 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.025 4.025 4 C 0.041 3.959 5 H 0.121 0.879 6 C -0.220 4.220 7 N -0.353 5.353 8 C 0.291 3.709 9 O -0.394 6.394 10 C 0.285 3.715 11 O -0.408 6.408 12 N -0.317 5.317 13 C 0.089 3.911 14 H 0.115 0.885 15 C -0.052 4.052 16 C -0.562 4.562 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.703 3.297 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.081 4.081 25 C -0.127 4.127 26 C -0.142 4.142 27 C -0.150 4.150 28 C -0.141 4.141 29 C -0.124 4.124 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.252 0.748 39 H 0.250 0.750 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.278 9.905 0.203 20.791 hybrid contribution 0.597 0.561 0.452 0.936 sum -17.682 10.466 0.655 20.557 Atomic orbital electron populations 1.22756 0.80799 1.03001 0.99935 1.87920 1.19835 1.27234 1.95396 1.22866 0.92807 0.85521 1.01318 1.21120 0.91838 0.98607 0.84363 0.87920 1.22101 1.02494 1.00920 0.96512 1.45773 1.14539 1.50372 1.24601 1.20389 0.82516 0.81692 0.86267 1.90750 1.53049 1.36792 1.58850 1.19917 0.83546 0.82429 0.85566 1.90719 1.53766 1.37399 1.58877 1.45737 1.12964 1.48480 1.24476 1.20118 0.97775 0.94704 0.78513 0.88512 1.19890 0.88302 0.98295 0.98672 1.20994 0.93295 1.25975 1.15892 0.90611 1.24979 0.98462 0.94611 0.94973 1.69906 1.16607 1.35101 1.31774 0.86846 0.81329 0.80687 0.80854 1.20202 1.21304 1.18905 1.20510 0.97115 0.94389 0.96077 1.20984 0.99657 0.93403 0.98679 1.21065 0.99937 0.99408 0.93817 1.21035 1.01177 0.94907 0.97864 1.21065 1.00614 0.93888 0.98486 1.21040 0.98248 1.00125 0.92980 0.94084 0.89440 0.93980 0.92392 0.91540 0.91644 0.91707 0.91219 0.74755 0.74977 0.95608 0.94895 0.92598 0.86331 0.86565 0.86693 0.86413 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.69 9.55 -35.23 -0.34 -4.03 16 3 C 0.05 0.43 5.68 37.16 0.21 0.64 16 4 C 0.15 1.57 2.98 -67.93 -0.20 1.37 16 5 H 0.10 1.11 7.58 -51.93 -0.39 0.72 16 6 C -0.16 -1.81 9.29 37.16 0.35 -1.46 16 7 N -0.70 -9.36 5.05 -54.24 -0.27 -9.63 16 8 C 0.51 8.46 7.85 -11.59 -0.09 8.37 16 9 O -0.52 -9.46 16.14 5.50 0.09 -9.37 16 10 C 0.51 9.35 7.85 -11.59 -0.09 9.26 16 11 O -0.53 -10.55 16.14 5.49 0.09 -10.46 16 12 N -0.67 -12.63 4.03 -55.37 -0.22 -12.85 16 13 C 0.19 3.81 2.11 -69.08 -0.15 3.66 16 14 H 0.10 2.06 7.44 -51.93 -0.39 1.67 16 15 C -0.01 -0.32 3.56 -27.89 -0.10 -0.41 16 16 C -0.52 -14.22 9.39 -34.44 -0.32 -14.54 16 17 H 0.08 2.26 7.99 -52.49 -0.42 1.85 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 20 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 24 C -0.08 -1.40 4.91 -104.62 -0.51 -1.91 16 25 C -0.11 -1.75 9.32 -39.58 -0.37 -2.11 16 26 C -0.12 -1.73 10.05 -39.58 -0.40 -2.12 16 27 C -0.13 -1.72 10.05 -39.59 -0.40 -2.12 16 28 C -0.12 -1.69 10.05 -39.58 -0.40 -2.08 16 29 C -0.11 -1.69 9.67 -39.58 -0.38 -2.07 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.82 7.56 -51.93 -0.39 0.43 16 38 H 0.42 5.45 7.85 -40.82 -0.32 5.13 16 39 H 0.41 7.75 8.07 -40.82 -0.33 7.42 16 40 H 0.03 0.57 7.20 -51.93 -0.37 0.20 16 41 H 0.03 0.74 7.57 -51.93 -0.39 0.35 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.12 1.83 7.73 -52.48 -0.41 1.42 16 44 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 46 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.12 1.86 8.04 -52.49 -0.42 1.44 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -32.65 398.83 -7.61 -40.26 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.23 Total: 12.25 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.84 Total: -2.29 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.28 Total: -48.78 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.16 Total: -23.86 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.65 -7.61 -40.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334577943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.566 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds