Wall clock time and date at job start Tue Mar 31 2020 18:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42894 * 114.00307 * 2 1 4 4 C 1.53006 * 109.47378 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46884 * 175.00525 * 4 3 2 6 6 C 1.52997 * 109.47127 * 54.99773 * 4 3 2 7 7 N 1.46497 * 109.46631 * 294.99989 * 4 3 2 8 8 C 1.34784 * 120.00075 * 204.99770 * 7 4 3 9 9 O 1.21350 * 119.99527 * 0.02562 * 8 7 4 10 10 C 1.49443 * 120.00449 * 180.02562 * 8 7 4 11 11 O 1.21352 * 119.99782 * 359.97438 * 10 8 7 12 12 N 1.34773 * 120.00090 * 180.02562 * 10 8 7 13 13 C 1.46500 * 120.00050 * 179.97438 * 12 10 8 14 14 H 1.08996 * 109.47197 * 34.99643 * 13 12 10 15 15 C 1.52996 * 109.47368 * 155.00010 * 13 12 10 16 16 C 1.50695 * 109.47110 * 295.00159 * 15 13 12 17 17 H 1.08001 * 120.00328 * 359.97438 * 16 15 13 18 18 C 1.37884 * 120.00169 * 179.97438 * 16 15 13 19 19 N 1.31513 * 119.99775 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99858 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47449 * 89.99629 * 20 18 16 22 22 H 1.48502 * 109.46929 * 210.00082 * 20 18 16 23 23 H 1.48502 * 109.46884 * 329.99675 * 20 18 16 24 24 C 1.50703 * 109.47155 * 274.99966 * 13 12 10 25 25 C 1.38233 * 120.00068 * 319.72404 * 24 13 12 26 26 C 1.38241 * 120.00200 * 179.80528 * 25 24 13 27 27 C 1.38236 * 119.99547 * 0.40439 * 26 25 24 28 28 C 1.38226 * 120.00210 * 359.85232 * 27 26 25 29 29 C 1.38234 * 119.99886 * 140.00036 * 24 13 12 30 30 H 1.09007 * 109.47106 * 60.00217 * 1 2 3 31 31 H 1.09003 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47374 * 300.00219 * 1 2 3 33 33 H 1.09000 * 109.47520 * 59.99972 * 3 2 1 34 34 H 1.08995 * 109.47360 * 299.99952 * 3 2 1 35 35 H 1.09002 * 109.47153 * 180.02562 * 6 4 3 36 36 H 1.09001 * 109.46832 * 60.00321 * 6 4 3 37 37 H 1.09004 * 109.47261 * 300.00303 * 6 4 3 38 38 H 0.96996 * 120.00792 * 25.00239 * 7 4 3 39 39 H 0.96994 * 120.00306 * 359.97438 * 12 10 8 40 40 H 1.09000 * 109.47097 * 55.00110 * 15 13 12 41 41 H 1.08997 * 109.47293 * 174.99770 * 15 13 12 42 42 H 0.97002 * 119.99781 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.00247 * 0.02562 * 25 24 13 44 44 H 1.08003 * 120.00003 * 180.23017 * 26 25 24 45 45 H 1.07999 * 119.99685 * 179.82611 * 27 26 25 46 46 H 1.08001 * 120.00435 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.00225 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9784 2.1764 -0.0901 6 6 3.9781 0.3197 -1.1826 7 7 3.9766 0.5639 1.2509 8 6 5.2208 0.7938 1.7152 9 8 5.9755 1.5153 1.0968 10 6 5.6711 0.1602 2.9916 11 8 4.9162 -0.5610 3.6103 12 7 6.9151 0.3905 3.4561 13 6 7.3563 -0.2302 4.7077 14 1 6.9136 -1.2221 4.7971 15 6 8.8815 -0.3505 4.7074 16 6 9.3102 -1.3001 3.6187 17 1 8.5690 -1.7711 2.9900 18 6 10.6489 -1.5677 3.4250 19 7 11.0230 -2.3968 2.4751 20 14 11.9310 -0.7537 4.5127 21 1 12.1870 -1.6076 5.7002 22 1 13.1914 -0.5799 3.7469 23 1 11.4337 0.5737 4.9554 24 6 6.9198 0.6215 5.8719 25 6 6.9993 1.9990 5.7887 26 6 6.5952 2.7803 6.8552 27 6 6.1194 2.1838 8.0078 28 6 6.0449 0.8061 8.0930 29 6 6.4453 0.0249 7.0251 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 5.0646 0.2332 -1.1828 36 1 3.6498 0.7815 -2.1137 37 1 3.5350 -0.6722 -1.0930 38 1 3.3733 -0.0126 1.7454 39 1 7.5183 0.9672 2.9619 40 1 9.3233 0.6299 4.5292 41 1 9.2162 -0.7297 5.6729 42 1 11.9647 -2.5854 2.3391 43 1 7.3738 2.4650 4.8893 44 1 6.6538 3.8567 6.7888 45 1 5.8063 2.7941 8.8420 46 1 5.6736 0.3400 8.9936 47 1 6.3870 -1.0515 7.0916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334577943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:29 Heat of formation + Delta-G solvation = -118.728602 kcal Electronic energy + Delta-G solvation = -28855.125682 eV Core-core repulsion = 24808.949401 eV Total energy + Delta-G solvation = -4046.176282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84831 -40.53299 -39.53778 -38.89056 -37.10606 -36.29660 -34.71582 -32.72551 -32.23961 -31.71356 -31.00399 -28.29527 -27.41481 -26.64010 -25.45296 -23.63485 -23.28258 -22.28060 -21.56293 -21.24809 -19.63389 -19.06907 -18.21750 -17.71454 -17.41031 -17.03500 -16.92422 -16.63938 -16.35266 -16.19467 -16.01264 -15.64594 -15.25745 -15.07500 -14.85801 -14.61632 -14.33948 -14.20312 -14.14419 -13.85849 -13.60118 -13.54811 -13.21747 -13.08370 -12.82605 -12.74051 -12.55728 -12.41319 -12.11931 -12.06469 -11.95495 -11.78308 -11.74617 -11.46379 -10.81437 -10.71635 -10.59869 -10.36825 -10.20461 -9.77175 -9.57774 -8.28877 -6.34302 0.34923 0.46524 0.54623 1.34302 1.37534 1.39393 1.49786 2.15953 2.35318 2.61373 2.83165 2.96064 3.07131 3.46444 3.74308 3.86360 3.99882 4.01236 4.19750 4.28498 4.29394 4.33796 4.44824 4.48657 4.52896 4.59022 4.63275 4.70473 4.72991 4.74776 4.89667 4.92269 4.94244 5.11220 5.16498 5.19186 5.21344 5.32907 5.39297 5.54115 5.63536 5.63993 5.75246 5.97646 6.16098 6.19950 6.23113 6.38635 6.72038 6.74379 6.96777 7.29704 8.87602 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009384 B = 0.003605 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.945297 B = 7764.157594 C = 9895.445593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.058 3.942 4 C 0.138 3.862 5 H 0.107 0.893 6 C -0.157 4.157 7 N -0.683 5.683 8 C 0.513 3.487 9 O -0.540 6.540 10 C 0.501 3.499 11 O -0.549 6.549 12 N -0.668 5.668 13 C 0.202 3.798 14 H 0.070 0.930 15 C -0.006 4.006 16 C -0.524 4.524 17 H 0.031 0.969 18 C 0.010 3.990 19 N -0.947 5.947 20 Si 0.947 3.053 21 H -0.268 1.268 22 H -0.286 1.286 23 H -0.243 1.243 24 C -0.102 4.102 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.124 4.124 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.036 0.964 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.418 0.582 39 H 0.413 0.587 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.266 0.734 43 H 0.117 0.883 44 H 0.145 0.855 45 H 0.152 0.848 46 H 0.147 0.853 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.900 12.864 2.165 23.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.019 4.019 4 C 0.035 3.965 5 H 0.124 0.876 6 C -0.215 4.215 7 N -0.336 5.336 8 C 0.293 3.707 9 O -0.417 6.417 10 C 0.282 3.718 11 O -0.427 6.427 12 N -0.318 5.318 13 C 0.098 3.902 14 H 0.088 0.912 15 C -0.043 4.043 16 C -0.562 4.562 17 H 0.049 0.951 18 C -0.187 4.187 19 N -0.587 5.587 20 Si 0.770 3.230 21 H -0.193 1.193 22 H -0.212 1.212 23 H -0.166 1.166 24 C -0.103 4.103 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.142 4.142 28 C -0.138 4.138 29 C -0.143 4.143 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.055 0.945 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.255 0.745 39 H 0.250 0.750 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.135 0.865 44 H 0.163 0.837 45 H 0.169 0.831 46 H 0.164 0.836 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.648 12.622 2.059 23.443 hybrid contribution 0.860 -0.334 -0.160 0.937 sum -18.788 12.288 1.899 22.529 Atomic orbital electron populations 1.22908 0.79268 1.03673 1.01065 1.87883 1.21558 1.27967 1.95650 1.22858 0.90412 0.85494 1.03117 1.21413 0.94100 0.98286 0.82672 0.87563 1.22056 1.00504 1.00952 0.98038 1.45841 1.13161 1.49474 1.25166 1.20037 0.83446 0.81663 0.85528 1.90736 1.53812 1.37963 1.59204 1.20319 0.83195 0.82132 0.86165 1.90693 1.54176 1.38250 1.59627 1.45738 1.13290 1.48309 1.24450 1.19789 0.95759 0.94478 0.80196 0.91191 1.19752 0.90518 0.97149 0.96895 1.21207 0.92536 1.26201 1.16269 0.95108 1.25930 1.00995 0.95287 0.96487 1.70068 1.17225 1.37291 1.34148 0.85716 0.77962 0.80552 0.78782 1.19275 1.21200 1.16602 1.20281 0.99647 0.94865 0.95555 1.21091 1.00430 0.92894 0.99707 1.21420 0.98765 1.00759 0.93185 1.21497 0.99304 0.94902 0.98459 1.21411 0.99506 0.94384 0.98548 1.21193 0.99104 1.00494 0.93514 0.92507 0.89134 0.93241 0.91459 0.88763 0.94466 0.88983 0.92011 0.74505 0.75038 0.94693 0.94337 0.92498 0.86496 0.83733 0.83057 0.83562 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.29 9.55 -148.98 -1.42 -8.71 16 3 C 0.06 0.84 5.68 71.98 0.41 1.25 16 4 C 0.14 2.89 2.98 44.99 0.13 3.03 16 5 H 0.11 2.19 7.58 -2.39 -0.02 2.17 16 6 C -0.16 -3.47 9.29 71.98 0.67 -2.80 16 7 N -0.68 -18.49 5.05 -443.87 -2.24 -20.73 16 8 C 0.51 17.56 7.85 87.27 0.69 18.24 16 9 O -0.54 -20.26 16.14 -3.25 -0.05 -20.31 16 10 C 0.50 19.40 7.85 87.27 0.68 20.09 16 11 O -0.55 -22.80 16.14 -3.25 -0.05 -22.85 16 12 N -0.67 -26.58 4.03 -447.45 -1.81 -28.38 16 13 C 0.20 8.31 2.11 44.24 0.09 8.40 16 14 H 0.07 3.20 7.44 -2.39 -0.02 3.18 16 15 C -0.01 -0.25 3.56 29.85 0.11 -0.15 16 16 C -0.52 -29.72 9.39 25.60 0.24 -29.48 16 17 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 18 C 0.01 0.60 5.47 84.66 0.46 1.06 16 19 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 20 Si 0.95 43.68 27.47 68.60 1.88 45.56 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 23 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 24 C -0.10 -3.58 4.91 -19.87 -0.10 -3.68 16 25 C -0.12 -3.79 9.32 22.27 0.21 -3.58 16 26 C -0.12 -3.03 10.05 22.27 0.22 -2.81 16 27 C -0.12 -2.74 10.05 22.27 0.22 -2.52 16 28 C -0.12 -2.98 10.05 22.27 0.22 -2.75 16 29 C -0.12 -3.91 9.67 22.27 0.22 -3.69 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.45 7.56 -2.38 -0.02 1.43 16 38 H 0.42 11.05 7.85 -92.71 -0.73 10.32 16 39 H 0.41 16.26 8.07 -92.71 -0.75 15.52 16 40 H 0.03 1.54 7.20 -2.39 -0.02 1.52 16 41 H 0.04 1.72 7.57 -2.39 -0.02 1.71 16 42 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.12 3.53 7.73 -2.91 -0.02 3.51 16 44 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 45 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 46 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 47 H 0.12 3.69 8.04 -2.91 -0.02 3.67 16 Total: -1.00 -73.96 398.83 1.79 -72.17 By element: Atomic # 1 Polarization: 40.78 SS G_CDS: -0.55 Total: 40.23 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.73 Total: 2.17 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -3.75 Total: -108.26 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -1.53 Total: -51.87 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Total: -73.96 1.79 -72.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334577943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.561 kcal (2) G-P(sol) polarization free energy of solvation -73.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds