Wall clock time and date at job start Tue Mar 31 2020 17:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00415 * 2 1 4 4 H 1.09003 * 109.47076 * 30.00135 * 3 2 1 5 5 C 1.52996 * 109.47360 * 269.99982 * 3 2 1 6 6 C 1.53002 * 109.47468 * 149.99690 * 3 2 1 7 7 N 1.46504 * 109.47304 * 300.00403 * 6 3 2 8 8 C 1.46498 * 119.99932 * 270.00048 * 7 6 3 9 9 C 1.34779 * 119.99767 * 89.99439 * 7 6 3 10 10 O 1.21359 * 120.00318 * 3.52772 * 9 7 6 11 11 C 1.49356 * 119.99423 * 183.52921 * 9 7 6 12 12 O 1.21373 * 120.00255 * 354.08250 * 11 9 7 13 13 N 1.34780 * 119.99740 * 174.36253 * 11 9 7 14 14 C 1.39723 * 119.99937 * 185.12816 * 13 11 9 15 15 C 1.38926 * 120.07689 * 214.41852 * 14 13 11 16 16 C 1.38092 * 119.92673 * 179.72361 * 15 14 13 17 17 C 1.38296 * 120.07333 * 0.53228 * 16 15 14 18 18 C 1.50697 * 119.92519 * 179.74455 * 17 16 15 19 19 C 1.50699 * 109.47344 * 270.02024 * 18 17 16 20 20 H 1.08001 * 119.99898 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00274 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00127 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99936 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47210 * 89.99602 * 23 21 19 25 25 H 1.48501 * 109.47285 * 210.00034 * 23 21 19 26 26 H 1.48500 * 109.47411 * 329.99880 * 23 21 19 27 27 C 1.38296 * 120.15016 * 359.76862 * 17 16 15 28 28 C 1.38091 * 120.07741 * 359.95090 * 27 17 16 29 29 H 1.09005 * 109.46763 * 59.99822 * 1 2 3 30 30 H 1.08999 * 109.47540 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47204 * 300.00097 * 1 2 3 32 32 H 1.08995 * 109.47323 * 299.99791 * 5 3 2 33 33 H 1.09003 * 109.46946 * 59.99852 * 5 3 2 34 34 H 1.09001 * 109.47544 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47516 * 180.02562 * 6 3 2 36 36 H 1.09003 * 109.46608 * 60.00159 * 6 3 2 37 37 H 1.09001 * 109.46746 * 264.07212 * 8 7 6 38 38 H 1.09002 * 109.47306 * 24.07134 * 8 7 6 39 39 H 1.08998 * 109.47086 * 144.07814 * 8 7 6 40 40 H 0.97000 * 119.99985 * 5.12610 * 13 11 9 41 41 H 1.08008 * 120.03700 * 359.97438 * 15 14 13 42 42 H 1.07997 * 119.96758 * 180.25488 * 16 15 14 43 43 H 1.09003 * 109.47088 * 30.02080 * 18 17 16 44 44 H 1.09005 * 109.47280 * 150.02162 * 18 17 16 45 45 H 0.97001 * 119.99927 * 180.02562 * 22 21 19 46 46 H 1.08002 * 119.96127 * 179.97438 * 27 17 16 47 47 H 1.08009 * 120.03955 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2178 1.7713 -1.4424 6 6 3.3589 1.2632 0.7213 7 7 3.1603 0.8170 2.1026 8 6 2.9028 1.7983 3.1594 9 6 3.2144 -0.4962 2.4009 10 8 3.4908 -1.3037 1.5381 11 6 2.9341 -0.9577 3.7934 12 8 2.7635 -0.1456 4.6792 13 7 2.8760 -2.2761 4.0676 14 6 2.5087 -2.7086 5.3443 15 6 3.0788 -3.8559 5.8816 16 6 2.7177 -4.2774 7.1461 17 6 1.7815 -3.5650 7.8731 18 6 1.3856 -4.0312 9.2503 19 6 0.2155 -4.9749 9.1443 20 1 -0.1997 -5.2136 8.1762 21 6 -0.3244 -5.5345 10.2828 22 7 -1.3452 -6.3585 10.1902 23 14 0.3942 -5.1223 11.9571 24 1 -0.2980 -3.9321 12.5134 25 1 0.2085 -6.2762 12.8732 26 1 1.8435 -4.8308 11.8157 27 6 1.2073 -2.4259 7.3388 28 6 1.5681 -1.9955 6.0772 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.8830 1.0774 -1.9563 33 1 1.2569 1.8014 -1.9563 34 1 2.6608 2.7672 -1.4425 35 1 3.8021 2.2590 0.7217 36 1 4.0242 0.5692 0.2074 37 1 3.8378 2.0435 3.6632 38 1 2.4786 2.7017 2.7210 39 1 2.2005 1.3799 3.8804 40 1 3.0893 -2.9246 3.3785 41 1 3.8066 -4.4154 5.3126 42 1 3.1635 -5.1669 7.5660 43 1 2.2265 -4.5459 9.7153 44 1 1.1047 -3.1712 9.8583 45 1 -1.7252 -6.7518 10.9913 46 1 0.4762 -1.8721 7.9090 47 1 1.1190 -1.1061 5.6603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338157957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:10 Heat of formation + Delta-G solvation = -72.783010 kcal Electronic energy + Delta-G solvation = -28432.395150 eV Core-core repulsion = 24388.211219 eV Total energy + Delta-G solvation = -4044.183931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16645 -39.58739 -38.48872 -37.91415 -36.19731 -34.86038 -32.96120 -32.44092 -30.88616 -30.43476 -28.10391 -27.59921 -26.87172 -26.59271 -24.20043 -22.59030 -22.46560 -21.61543 -20.30516 -19.90670 -18.17163 -17.42943 -17.12935 -16.77660 -16.58175 -16.48385 -15.83255 -15.53727 -15.15402 -14.97200 -14.55059 -14.27399 -14.06856 -13.83239 -13.47063 -13.33792 -13.18227 -13.00739 -12.98673 -12.82243 -12.59974 -12.47586 -12.43104 -12.30902 -11.86364 -11.70934 -11.48117 -11.38013 -11.16881 -10.85058 -10.52374 -10.23539 -10.09032 -10.02131 -9.74855 -9.39137 -9.34242 -8.99964 -8.58960 -8.40377 -7.50810 -6.07883 -4.07148 1.16051 1.92310 1.95471 2.19819 3.10895 3.27836 3.28692 3.36578 3.39346 3.43257 4.18031 4.38240 4.39922 4.41139 4.60377 4.64921 4.84584 4.92905 4.98701 5.08004 5.18713 5.21820 5.23372 5.34747 5.38083 5.42857 5.43662 5.47941 5.60752 5.69604 5.82204 5.91963 5.92987 6.04546 6.06491 6.49915 6.56045 6.69099 6.78379 6.89027 6.91804 7.00362 7.01459 7.22788 7.49533 7.56479 7.63532 7.69890 7.91508 8.48756 8.97402 9.52272 11.04935 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024098 B = 0.002156 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.636415 B =12984.917620 C =13237.770963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.066 3.934 4 H 0.062 0.938 5 C -0.172 4.172 6 C 0.115 3.885 7 N -0.588 5.588 8 C 0.063 3.937 9 C 0.514 3.486 10 O -0.504 6.504 11 C 0.503 3.497 12 O -0.501 6.501 13 N -0.635 5.635 14 C 0.102 3.898 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.034 4.034 18 C 0.014 3.986 19 C -0.513 4.513 20 H 0.074 0.926 21 C 0.068 3.932 22 N -0.899 5.899 23 Si 0.878 3.122 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.264 1.264 27 C -0.105 4.105 28 C -0.113 4.113 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.418 0.582 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.029 0.971 44 H 0.024 0.976 45 H 0.264 0.736 46 H 0.124 0.876 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.079 18.490 -21.154 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.007 3.993 4 H 0.080 0.920 5 C -0.231 4.231 6 C -0.007 4.007 7 N -0.322 5.322 8 C -0.079 4.079 9 C 0.296 3.704 10 O -0.378 6.378 11 C 0.286 3.714 12 O -0.376 6.376 13 N -0.281 5.281 14 C 0.010 3.990 15 C -0.155 4.155 16 C -0.123 4.123 17 C -0.034 4.034 18 C -0.024 4.024 19 C -0.551 4.551 20 H 0.092 0.908 21 C -0.133 4.133 22 N -0.538 5.538 23 Si 0.705 3.295 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.189 1.189 27 C -0.124 4.124 28 C -0.133 4.133 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.255 0.745 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.047 0.953 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.142 0.858 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.097 18.376 -20.922 29.294 hybrid contribution 0.000 0.128 0.486 0.503 sum 9.097 18.504 -20.435 29.030 Atomic orbital electron populations 1.22791 0.81284 1.02958 0.99584 1.88075 1.19278 1.26411 1.94917 1.22574 0.95235 0.85792 0.95715 0.92005 1.22220 1.02846 1.01655 0.96329 1.21780 0.96539 1.01494 0.80934 1.47525 1.69715 1.05889 1.09119 1.22439 1.03355 0.91527 0.90579 1.19906 0.78927 0.83143 0.88442 1.90767 1.45591 1.52701 1.48712 1.20177 0.78692 0.83330 0.89249 1.90688 1.47443 1.52160 1.47345 1.43075 1.65442 1.06910 1.12694 1.17516 0.98675 0.97382 0.85411 1.20787 1.01056 0.97170 0.96452 1.20881 0.98258 0.99756 0.93433 1.20348 0.92628 0.92440 0.97996 1.18823 0.97571 0.96802 0.89158 1.20927 1.13221 1.25579 0.95340 0.90780 1.25006 0.94637 0.94612 0.99059 1.69902 1.23761 1.30844 1.29284 0.86801 0.80349 0.78134 0.84206 1.20168 1.21280 1.18905 1.20955 0.99733 0.96900 0.94805 1.20928 0.96598 1.00311 0.95425 0.94238 0.89530 0.94234 0.91331 0.92082 0.91443 0.88619 0.88564 0.92000 0.91778 0.87387 0.74492 0.86312 0.85674 0.95309 0.95744 0.92605 0.85814 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.37 -3.91 9.11 -39.07 -0.36 -4.27 16 3 C 0.07 0.50 2.99 -26.73 -0.08 0.42 16 4 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 5 C -0.17 -0.95 9.53 37.16 0.35 -0.60 16 6 C 0.12 0.87 5.17 -4.04 -0.02 0.85 16 7 N -0.59 -5.77 2.83 -182.12 -0.52 -6.29 16 8 C 0.06 0.52 9.55 59.85 0.57 1.09 16 9 C 0.51 6.47 7.19 -11.63 -0.08 6.38 16 10 O -0.50 -7.25 15.46 1.65 0.03 -7.22 16 11 C 0.50 6.90 7.50 -11.63 -0.09 6.81 16 12 O -0.50 -7.43 10.92 5.48 0.06 -7.37 16 13 N -0.64 -8.75 5.32 -10.30 -0.05 -8.81 16 14 C 0.10 1.66 6.25 -83.75 -0.52 1.13 16 15 C -0.13 -2.16 9.97 -39.38 -0.39 -2.55 16 16 C -0.10 -1.94 9.69 -39.61 -0.38 -2.32 16 17 C -0.03 -0.70 5.07 -104.58 -0.53 -1.23 16 18 C 0.01 0.32 4.17 -29.04 -0.12 0.20 16 19 C -0.51 -14.39 9.65 -34.44 -0.33 -14.72 16 20 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 23 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 27 C -0.11 -2.02 9.69 -39.61 -0.38 -2.41 16 28 C -0.11 -1.97 8.65 -39.38 -0.34 -2.31 16 29 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.10 0.43 8.07 -51.93 -0.42 0.01 16 36 H 0.10 0.86 7.38 -51.93 -0.38 0.48 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.35 8.03 -51.93 -0.42 -0.06 16 39 H 0.11 1.11 5.35 -51.94 -0.28 0.83 16 40 H 0.42 5.02 8.30 -40.82 -0.34 4.68 16 41 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 42 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 44 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 46 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 47 H 0.12 2.04 6.53 -52.48 -0.34 1.70 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -33.46 390.11 -7.34 -40.80 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.13 Total: 3.36 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.36 Total: -6.05 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.20 Total: -41.70 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.27 Total: -18.86 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.46 -7.34 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338157957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.978 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds