Wall clock time and date at job start Tue Mar 31 2020 17:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00415 * 2 1 4 4 H 1.09003 * 109.47076 * 30.00135 * 3 2 1 5 5 C 1.52996 * 109.47360 * 269.99982 * 3 2 1 6 6 C 1.53002 * 109.47468 * 149.99690 * 3 2 1 7 7 N 1.46504 * 109.47304 * 300.00403 * 6 3 2 8 8 C 1.46498 * 119.99932 * 270.00048 * 7 6 3 9 9 C 1.34779 * 119.99767 * 89.99439 * 7 6 3 10 10 O 1.21359 * 120.00318 * 3.52772 * 9 7 6 11 11 C 1.49356 * 119.99423 * 183.52921 * 9 7 6 12 12 O 1.21373 * 120.00255 * 354.08250 * 11 9 7 13 13 N 1.34780 * 119.99740 * 174.36253 * 11 9 7 14 14 C 1.39723 * 119.99937 * 185.12816 * 13 11 9 15 15 C 1.38926 * 120.07689 * 214.41852 * 14 13 11 16 16 C 1.38092 * 119.92673 * 179.72361 * 15 14 13 17 17 C 1.38296 * 120.07333 * 0.53228 * 16 15 14 18 18 C 1.50697 * 119.92519 * 179.74455 * 17 16 15 19 19 C 1.50699 * 109.47344 * 270.02024 * 18 17 16 20 20 H 1.08001 * 119.99898 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00274 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00127 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99936 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47210 * 89.99602 * 23 21 19 25 25 H 1.48501 * 109.47285 * 210.00034 * 23 21 19 26 26 H 1.48500 * 109.47411 * 329.99880 * 23 21 19 27 27 C 1.38296 * 120.15016 * 359.76862 * 17 16 15 28 28 C 1.38091 * 120.07741 * 359.95090 * 27 17 16 29 29 H 1.09005 * 109.46763 * 59.99822 * 1 2 3 30 30 H 1.08999 * 109.47540 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47204 * 300.00097 * 1 2 3 32 32 H 1.08995 * 109.47323 * 299.99791 * 5 3 2 33 33 H 1.09003 * 109.46946 * 59.99852 * 5 3 2 34 34 H 1.09001 * 109.47544 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47516 * 180.02562 * 6 3 2 36 36 H 1.09003 * 109.46608 * 60.00159 * 6 3 2 37 37 H 1.09001 * 109.46746 * 264.07212 * 8 7 6 38 38 H 1.09002 * 109.47306 * 24.07134 * 8 7 6 39 39 H 1.08998 * 109.47086 * 144.07814 * 8 7 6 40 40 H 0.97000 * 119.99985 * 5.12610 * 13 11 9 41 41 H 1.08008 * 120.03700 * 359.97438 * 15 14 13 42 42 H 1.07997 * 119.96758 * 180.25488 * 16 15 14 43 43 H 1.09003 * 109.47088 * 30.02080 * 18 17 16 44 44 H 1.09005 * 109.47280 * 150.02162 * 18 17 16 45 45 H 0.97001 * 119.99927 * 180.02562 * 22 21 19 46 46 H 1.08002 * 119.96127 * 179.97438 * 27 17 16 47 47 H 1.08009 * 120.03955 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2178 1.7713 -1.4424 6 6 3.3589 1.2632 0.7213 7 7 3.1603 0.8170 2.1026 8 6 2.9028 1.7983 3.1594 9 6 3.2144 -0.4962 2.4009 10 8 3.4908 -1.3037 1.5381 11 6 2.9341 -0.9577 3.7934 12 8 2.7635 -0.1456 4.6792 13 7 2.8760 -2.2761 4.0676 14 6 2.5087 -2.7086 5.3443 15 6 3.0788 -3.8559 5.8816 16 6 2.7177 -4.2774 7.1461 17 6 1.7815 -3.5650 7.8731 18 6 1.3856 -4.0312 9.2503 19 6 0.2155 -4.9749 9.1443 20 1 -0.1997 -5.2136 8.1762 21 6 -0.3244 -5.5345 10.2828 22 7 -1.3452 -6.3585 10.1902 23 14 0.3942 -5.1223 11.9571 24 1 -0.2980 -3.9321 12.5134 25 1 0.2085 -6.2762 12.8732 26 1 1.8435 -4.8308 11.8157 27 6 1.2073 -2.4259 7.3388 28 6 1.5681 -1.9955 6.0772 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.8830 1.0774 -1.9563 33 1 1.2569 1.8014 -1.9563 34 1 2.6608 2.7672 -1.4425 35 1 3.8021 2.2590 0.7217 36 1 4.0242 0.5692 0.2074 37 1 3.8378 2.0435 3.6632 38 1 2.4786 2.7017 2.7210 39 1 2.2005 1.3799 3.8804 40 1 3.0893 -2.9246 3.3785 41 1 3.8066 -4.4154 5.3126 42 1 3.1635 -5.1669 7.5660 43 1 2.2265 -4.5459 9.7153 44 1 1.1047 -3.1712 9.8583 45 1 -1.7252 -6.7518 10.9913 46 1 0.4762 -1.8721 7.9090 47 1 1.1190 -1.1061 5.6603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338157957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:09 Heat of formation + Delta-G solvation = -94.672285 kcal Electronic energy + Delta-G solvation = -28433.344340 eV Core-core repulsion = 24388.211219 eV Total energy + Delta-G solvation = -4045.133121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.21814 -40.65312 -39.50130 -38.90358 -37.15839 -36.07773 -34.90277 -33.03784 -32.61962 -31.84091 -29.25292 -28.54563 -27.67968 -27.46731 -25.46004 -24.00811 -23.83634 -22.43452 -21.70293 -20.98219 -19.16921 -18.94589 -18.51331 -17.90942 -17.47930 -17.37336 -16.81672 -16.60022 -16.37622 -15.99075 -15.90476 -15.68647 -15.21069 -14.87688 -14.76258 -14.42298 -14.33029 -14.09832 -13.94148 -13.91096 -13.66988 -13.47809 -13.46778 -13.21766 -13.07488 -12.93661 -12.52170 -12.45315 -12.36913 -12.15974 -11.85179 -11.78004 -11.74535 -11.56858 -11.11504 -10.76977 -10.72824 -10.42511 -9.81631 -9.77027 -8.93800 -8.27869 -6.32837 0.02148 0.52963 0.66662 1.20520 1.38740 1.40143 1.52132 2.07238 2.36957 2.37132 2.84241 2.91988 3.06438 3.19753 3.86366 3.99634 4.06561 4.08251 4.12190 4.28108 4.32981 4.35783 4.39189 4.48610 4.51034 4.54126 4.60883 4.65860 4.75486 4.80519 4.85383 4.97408 5.00905 5.03916 5.09690 5.20187 5.23712 5.31421 5.33681 5.39243 5.53517 5.59389 5.86168 5.97693 6.07674 6.15862 6.29443 6.30071 6.64225 6.73506 6.86434 7.30454 8.88439 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024098 B = 0.002156 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.636415 B =12984.917620 C =13237.770963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.061 3.939 4 H 0.074 0.926 5 C -0.166 4.166 6 C 0.111 3.889 7 N -0.579 5.579 8 C 0.062 3.938 9 C 0.513 3.487 10 O -0.528 6.528 11 C 0.503 3.497 12 O -0.512 6.512 13 N -0.632 5.632 14 C 0.113 3.887 15 C -0.127 4.127 16 C -0.111 4.111 17 C -0.068 4.068 18 C 0.020 3.980 19 C -0.518 4.518 20 H 0.029 0.971 21 C 0.006 3.994 22 N -0.949 5.949 23 Si 0.951 3.049 24 H -0.266 1.266 25 H -0.284 1.284 26 H -0.244 1.244 27 C -0.115 4.115 28 C -0.118 4.118 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.427 0.573 41 H 0.154 0.846 42 H 0.132 0.868 43 H 0.035 0.965 44 H 0.029 0.971 45 H 0.267 0.733 46 H 0.123 0.877 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.879 20.832 -21.915 32.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.320 6.320 3 C 0.002 3.998 4 H 0.092 0.908 5 C -0.224 4.224 6 C -0.010 4.010 7 N -0.312 5.312 8 C -0.079 4.079 9 C 0.294 3.706 10 O -0.404 6.404 11 C 0.286 3.714 12 O -0.388 6.388 13 N -0.279 5.279 14 C 0.020 3.980 15 C -0.147 4.147 16 C -0.130 4.130 17 C -0.069 4.069 18 C -0.017 4.017 19 C -0.555 4.555 20 H 0.047 0.953 21 C -0.191 4.191 22 N -0.589 5.589 23 Si 0.774 3.226 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.167 1.167 27 C -0.133 4.133 28 C -0.137 4.137 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.266 0.734 41 H 0.172 0.828 42 H 0.150 0.850 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.141 0.859 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.911 20.765 -21.717 31.966 hybrid contribution -0.581 -0.515 0.540 0.945 sum 10.331 20.250 -21.177 31.068 Atomic orbital electron populations 1.22833 0.80617 1.02863 1.00434 1.88038 1.20253 1.28508 1.95163 1.22767 0.95035 0.84908 0.97050 0.90824 1.22178 1.02878 1.02611 0.94772 1.22067 0.96705 1.02979 0.79289 1.47669 1.67960 1.05076 1.10506 1.22487 1.03233 0.92056 0.90134 1.19697 0.79299 0.84129 0.87441 1.90761 1.47230 1.53507 1.48931 1.20517 0.78054 0.83022 0.89847 1.90700 1.47707 1.52432 1.47921 1.43049 1.65425 1.07460 1.11979 1.17617 0.97489 0.96901 0.86034 1.21058 1.00988 0.97008 0.95622 1.21030 0.97866 0.99753 0.94319 1.20236 0.95017 0.94125 0.97478 1.18668 0.95783 0.95838 0.91421 1.21156 1.14541 1.26330 0.93521 0.95298 1.25990 0.94973 0.94374 1.03751 1.70062 1.25665 1.32539 1.30683 0.85651 0.80565 0.78100 0.78326 1.19152 1.20949 1.16746 1.20991 0.99887 0.96799 0.95672 1.20990 0.97027 1.00757 0.94973 0.92559 0.90241 0.94127 0.92364 0.91999 0.89007 0.84790 0.90073 0.91542 0.88397 0.89483 0.73356 0.82843 0.84986 0.94679 0.95224 0.92416 0.85944 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.82 113.37 1.23 1.68 16 2 O -0.40 -8.11 9.11 -145.31 -1.32 -9.43 16 3 C 0.06 0.78 2.99 30.59 0.09 0.87 16 4 H 0.07 0.76 7.79 -2.39 -0.02 0.74 16 5 C -0.17 -1.44 9.53 71.98 0.69 -0.75 16 6 C 0.11 1.41 5.17 86.38 0.45 1.85 16 7 N -0.58 -10.20 2.83 -848.44 -2.40 -12.60 16 8 C 0.06 0.87 9.55 127.77 1.22 2.09 16 9 C 0.51 12.33 7.19 87.24 0.63 12.95 16 10 O -0.53 -14.83 15.46 0.40 0.01 -14.82 16 11 C 0.50 13.23 7.50 87.24 0.65 13.88 16 12 O -0.51 -14.64 10.92 -3.32 -0.04 -14.68 16 13 N -0.63 -16.62 5.32 -304.84 -1.62 -18.24 16 14 C 0.11 3.52 6.25 38.21 0.24 3.76 16 15 C -0.13 -3.87 9.97 22.40 0.22 -3.65 16 16 C -0.11 -4.05 9.69 22.25 0.22 -3.83 16 17 C -0.07 -2.85 5.07 -19.84 -0.10 -2.95 16 18 C 0.02 0.95 4.17 29.10 0.12 1.07 16 19 C -0.52 -29.94 9.65 25.60 0.25 -29.70 16 20 H 0.03 1.87 7.98 -2.91 -0.02 1.85 16 21 C 0.01 0.35 5.47 84.65 0.46 0.81 16 22 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 23 Si 0.95 43.82 27.47 68.60 1.88 45.70 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 27 C -0.11 -4.47 9.69 22.25 0.22 -4.25 16 28 C -0.12 -4.06 8.65 22.40 0.19 -3.87 16 29 H 0.06 0.67 7.87 -2.38 -0.02 0.65 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.53 7.87 -2.39 -0.02 0.51 16 34 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.13 0.66 8.07 -2.39 -0.02 0.64 16 36 H 0.08 1.33 7.38 -2.39 -0.02 1.31 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 0.71 8.03 -2.39 -0.02 0.69 16 39 H 0.09 1.66 5.35 -2.48 -0.01 1.64 16 40 H 0.43 9.68 8.30 -92.71 -0.77 8.91 16 41 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 42 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 43 H 0.03 1.60 7.14 -2.39 -0.02 1.58 16 44 H 0.03 1.35 7.51 -2.38 -0.02 1.34 16 45 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 46 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 47 H 0.13 4.25 6.53 -2.91 -0.02 4.23 16 Total: -1.00 -74.78 390.11 3.73 -71.05 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.15 Total: 22.28 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 6.77 Total: -10.03 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -3.72 Total: -90.08 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.35 Total: -38.93 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -74.78 3.73 -71.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338157957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.625 kcal (2) G-P(sol) polarization free energy of solvation -74.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds