Wall clock time and date at job start Tue Mar 31 2020 18:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46710 * 2 1 4 4 C 1.46498 * 119.99730 * 260.75927 * 3 2 1 5 5 C 1.50701 * 109.47223 * 272.80398 * 4 3 2 6 6 O 1.34306 * 125.78315 * 278.77023 * 5 4 3 7 7 C 1.34302 * 109.46980 * 179.82614 * 6 5 4 8 8 C 1.34520 * 108.42556 * 0.43983 * 7 6 5 9 9 C 1.34512 * 125.79012 * 99.08073 * 5 4 3 10 10 C 1.50689 * 126.57981 * 0.03391 * 9 5 4 11 11 C 1.34772 * 120.00076 * 80.75929 * 3 2 1 12 12 O 1.21349 * 120.00184 * 179.53483 * 11 3 2 13 13 C 1.49449 * 120.00163 * 359.54002 * 11 3 2 14 14 O 1.21350 * 119.99907 * 5.28318 * 13 11 3 15 15 N 1.34774 * 120.00397 * 185.28817 * 13 11 3 16 16 C 1.46504 * 120.00526 * 185.05119 * 15 13 11 17 17 C 1.52997 * 109.47006 * 184.11593 * 16 15 13 18 18 C 1.50697 * 115.55243 * 306.88964 * 17 16 15 19 19 H 1.08005 * 119.99535 * 98.00278 * 18 17 16 20 20 C 1.37868 * 120.00262 * 277.72316 * 18 17 16 21 21 N 1.31516 * 120.00151 * 198.25677 * 20 18 17 22 22 Si 1.86803 * 119.99892 * 18.25339 * 20 18 17 23 23 H 1.48503 * 109.46808 * 90.70889 * 22 20 18 24 24 H 1.48497 * 109.46998 * 210.70323 * 22 20 18 25 25 H 1.48499 * 109.47405 * 330.70652 * 22 20 18 26 26 C 1.53007 * 117.49554 * 92.56531 * 17 16 15 27 27 C 1.53004 * 117.49515 * 161.22020 * 17 16 15 28 28 H 1.08996 * 109.47635 * 59.99758 * 1 2 3 29 29 H 1.09002 * 109.46567 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47050 * 299.99951 * 1 2 3 31 31 H 1.08993 * 109.46738 * 240.00083 * 2 1 3 32 32 H 1.08996 * 109.47185 * 119.99955 * 2 1 3 33 33 H 1.09007 * 109.47333 * 32.80214 * 4 3 2 34 34 H 1.08998 * 109.47028 * 152.79628 * 4 3 2 35 35 H 1.08001 * 125.78818 * 180.13829 * 7 6 5 36 36 H 1.07996 * 126.58012 * 179.71328 * 8 7 6 37 37 H 1.09000 * 109.47535 * 86.33034 * 10 9 5 38 38 H 1.09005 * 109.47408 * 206.33068 * 10 9 5 39 39 H 1.09004 * 109.47713 * 326.32681 * 10 9 5 40 40 H 0.97007 * 119.99695 * 5.03952 * 15 13 11 41 41 H 1.08994 * 109.46711 * 64.11434 * 16 15 13 42 42 H 1.09006 * 109.46594 * 304.11824 * 16 15 13 43 43 H 0.97006 * 119.99881 * 179.97438 * 21 20 18 44 44 H 1.08996 * 117.49772 * 214.99767 * 26 17 16 45 45 H 1.08996 * 117.49845 * 0.02562 * 26 17 16 46 46 H 1.09004 * 117.49790 * 359.97438 * 27 17 16 47 47 H 1.08998 * 117.49674 * 144.97437 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4545 2.0040 -1.2523 5 6 3.9099 1.6921 -1.4881 6 8 4.9506 2.3321 -0.9304 7 6 6.0976 1.7850 -1.3648 8 6 5.7973 0.7892 -2.2179 9 6 4.3870 0.7293 -2.2973 10 6 3.5743 -0.2286 -3.1295 11 6 2.0662 2.0791 1.1520 12 8 2.4785 3.2204 1.1534 13 6 1.6115 1.4474 2.4278 14 8 1.2900 0.2774 2.4446 15 7 1.5585 2.1770 3.5597 16 6 1.2199 1.5331 4.8313 17 6 1.1284 2.5927 5.9311 18 6 2.3301 3.4915 6.0694 19 1 2.3275 4.4705 5.6133 20 6 3.4305 3.0663 6.7829 21 7 4.3140 3.9409 7.2121 22 14 3.6665 1.2480 7.1401 23 1 4.4627 0.6287 6.0503 24 1 4.3835 1.0861 8.4304 25 1 2.3409 0.5838 7.2237 26 6 -0.2464 3.2031 6.2113 27 6 0.3733 2.2212 7.2089 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8606 1.6131 -2.0786 34 1 2.3201 3.0837 -1.1873 35 1 7.0925 2.0954 -1.0814 36 1 6.4989 0.1571 -2.7418 37 1 3.3393 0.2325 -4.0888 38 1 4.1465 -1.1414 -3.2956 39 1 2.6491 -0.4701 -2.6061 40 1 1.7448 3.1287 3.5324 41 1 1.9922 0.8082 5.0884 42 1 0.2607 1.0239 4.7365 43 1 5.0881 3.6417 7.7144 44 1 -0.2816 4.2547 6.4957 45 1 -1.0856 2.8494 5.6125 46 1 -0.0587 1.2220 7.2658 47 1 0.7459 2.6266 8.1496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345388532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:25 Heat of formation + Delta-G solvation = -16.224546 kcal Electronic energy + Delta-G solvation = -29600.778757 eV Core-core repulsion = 25559.047385 eV Total energy + Delta-G solvation = -4041.731372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.68575 -40.56095 -38.37720 -37.08868 -36.37613 -34.27317 -33.45116 -32.18324 -31.82207 -30.14425 -28.39790 -27.31650 -26.02665 -25.29900 -23.81232 -22.45825 -21.63127 -21.37667 -20.12665 -19.62446 -18.94673 -17.45393 -17.27132 -16.95202 -16.36874 -16.12761 -15.71894 -15.31038 -15.07506 -14.93291 -14.49604 -14.41362 -13.94672 -13.61974 -13.55971 -13.32069 -13.14791 -12.90702 -12.82123 -12.71766 -12.59017 -12.37435 -12.33500 -12.21208 -11.96983 -11.61265 -11.24770 -11.11430 -10.85573 -10.79707 -10.59216 -10.20845 -9.73139 -9.71220 -9.31073 -9.20503 -8.87493 -8.71579 -8.51376 -8.46572 -8.40268 -6.21680 -4.20907 1.50181 1.72851 2.35224 2.71456 2.95792 3.26577 3.36036 3.39308 3.51677 3.75246 4.37252 4.52855 4.62625 4.70654 4.76906 4.87262 4.95522 4.99162 5.07095 5.22887 5.29823 5.35254 5.37838 5.46232 5.59378 5.62510 5.64644 5.70350 5.84188 5.94329 5.99710 6.06233 6.09039 6.12497 6.19645 6.33556 6.36031 6.44276 6.46418 6.68431 6.83044 6.93894 7.02555 7.10821 7.13814 7.67492 7.69348 8.07616 8.37410 8.45190 8.84699 9.44761 10.89392 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.003477 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.464789 B = 8050.242078 C = 9042.124988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.093 3.907 3 N -0.588 5.588 4 C 0.193 3.807 5 C -0.032 4.032 6 O -0.160 6.160 7 C -0.031 4.031 8 C -0.218 4.218 9 C -0.169 4.169 10 C -0.085 4.085 11 C 0.508 3.492 12 O -0.505 6.505 13 C 0.498 3.502 14 O -0.533 6.533 15 N -0.663 5.663 16 C 0.151 3.849 17 C -0.019 4.019 18 C -0.502 4.502 19 H 0.079 0.921 20 C 0.090 3.910 21 N -0.881 5.881 22 Si 0.861 3.139 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.250 1.250 26 C -0.179 4.179 27 C -0.178 4.178 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.202 0.798 36 H 0.146 0.854 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.420 0.580 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.266 0.734 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 -8.581 -19.643 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.029 4.029 3 N -0.323 5.323 4 C 0.070 3.930 5 C -0.084 4.084 6 O -0.054 6.054 7 C -0.099 4.099 8 C -0.237 4.237 9 C -0.171 4.171 10 C -0.142 4.142 11 C 0.291 3.709 12 O -0.378 6.378 13 C 0.278 3.722 14 O -0.413 6.413 15 N -0.313 5.313 16 C 0.028 3.972 17 C -0.020 4.020 18 C -0.538 4.538 19 H 0.097 0.903 20 C -0.115 4.115 21 N -0.516 5.516 22 Si 0.687 3.313 23 H -0.205 1.205 24 H -0.216 1.216 25 H -0.174 1.174 26 C -0.216 4.216 27 C -0.216 4.216 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.218 0.782 36 H 0.164 0.836 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.258 0.742 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.625 -8.480 -19.262 21.356 hybrid contribution 0.816 -0.746 0.114 1.112 sum -2.809 -9.227 -19.148 21.439 Atomic orbital electron populations 1.22094 0.95379 1.02351 1.01886 1.22176 0.95050 0.80927 1.04723 1.47923 1.62998 1.15163 1.06220 1.19863 0.85230 1.01142 0.86740 1.22640 0.90037 0.96639 0.99088 1.84149 1.13999 1.50643 1.56636 1.24103 0.89664 0.96956 0.99215 1.21682 0.95274 1.02466 1.04325 1.20238 0.94150 0.99998 1.02760 1.20254 0.98631 0.97122 0.98196 1.20490 0.79238 0.86095 0.85126 1.90791 1.43980 1.17307 1.85759 1.19880 0.80290 0.86912 0.85113 1.90610 1.48953 1.16064 1.85639 1.45808 1.65222 1.14024 1.06260 1.21287 0.98856 0.95103 0.81992 1.19524 0.93101 0.96740 0.92627 1.20130 0.97142 1.01644 1.34908 0.90307 1.24881 0.95706 0.97158 0.93725 1.69984 1.12961 1.33928 1.34769 0.87162 0.79471 0.86999 0.77640 1.20542 1.21636 1.17367 1.22873 0.96352 0.98551 1.03821 1.22947 1.05260 0.98006 0.95408 0.93321 0.91519 0.91815 0.91016 0.86746 0.87078 0.87725 0.78180 0.83575 0.91419 0.91443 0.91579 0.74172 0.92232 0.92542 0.92425 0.89375 0.90934 0.90975 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.65 37.16 0.36 -1.32 16 2 C 0.09 1.08 5.75 -4.04 -0.02 1.06 16 3 N -0.59 -7.97 2.48 -175.57 -0.44 -8.41 16 4 C 0.19 2.20 5.72 -5.19 -0.03 2.17 16 5 C -0.03 -0.42 6.90 -35.62 -0.25 -0.66 16 6 O -0.16 -2.40 10.65 5.70 0.06 -2.33 16 7 C -0.03 -0.36 12.09 29.42 0.36 0.00 16 8 C -0.22 -2.36 10.87 -39.70 -0.43 -2.79 16 9 C -0.17 -1.87 6.16 -104.75 -0.65 -2.51 16 10 C -0.09 -0.65 9.87 36.00 0.36 -0.30 16 11 C 0.51 8.74 7.66 -11.59 -0.09 8.66 16 12 O -0.50 -9.92 16.04 5.50 0.09 -9.83 16 13 C 0.50 9.19 7.36 -11.59 -0.09 9.11 16 14 O -0.53 -9.83 11.79 5.50 0.06 -9.77 16 15 N -0.66 -13.16 5.39 -60.73 -0.33 -13.49 16 16 C 0.15 3.10 5.23 -4.04 -0.02 3.08 16 17 C -0.02 -0.41 0.98 -155.66 -0.15 -0.56 16 18 C -0.50 -13.23 8.49 -34.44 -0.29 -13.52 16 19 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 20 C 0.09 2.49 5.44 -17.82 -0.10 2.40 16 21 N -0.88 -26.06 13.96 55.43 0.77 -25.29 16 22 Si 0.86 20.97 25.38 -169.99 -4.31 16.65 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.25 -5.66 5.71 56.52 0.32 -5.33 16 26 C -0.18 -3.45 9.92 -26.69 -0.26 -3.72 16 27 C -0.18 -3.61 8.08 -26.69 -0.22 -3.82 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.83 6.62 -51.93 -0.34 0.48 16 31 H 0.07 0.66 6.03 -51.93 -0.31 0.34 16 32 H 0.11 1.62 5.57 -51.93 -0.29 1.33 16 33 H 0.11 0.87 7.39 -51.93 -0.38 0.48 16 34 H 0.10 1.27 7.34 -51.93 -0.38 0.89 16 35 H 0.20 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.45 5.77 -51.93 -0.30 0.15 16 40 H 0.42 8.64 7.40 -40.82 -0.30 8.34 16 41 H 0.06 1.32 5.57 -51.93 -0.29 1.03 16 42 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 LS Contribution 383.14 15.07 5.77 5.77 Total: -1.00 -31.83 383.14 -6.73 -38.56 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.88 Total: 10.87 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.52 Total: -2.74 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.01 Total: -47.18 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.21 Total: -21.93 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.31 Total: 16.65 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.83 -6.73 -38.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345388532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.332 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds