Wall clock time and date at job start Tue Mar 31 2020 18:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46710 * 2 1 4 4 C 1.46498 * 119.99730 * 260.75927 * 3 2 1 5 5 C 1.50701 * 109.47223 * 272.80398 * 4 3 2 6 6 O 1.34306 * 125.78315 * 278.77023 * 5 4 3 7 7 C 1.34302 * 109.46980 * 179.82614 * 6 5 4 8 8 C 1.34520 * 108.42556 * 0.43983 * 7 6 5 9 9 C 1.34512 * 125.79012 * 99.08073 * 5 4 3 10 10 C 1.50689 * 126.57981 * 0.03391 * 9 5 4 11 11 C 1.34772 * 120.00076 * 80.75929 * 3 2 1 12 12 O 1.21349 * 120.00184 * 179.53483 * 11 3 2 13 13 C 1.49449 * 120.00163 * 359.54002 * 11 3 2 14 14 O 1.21350 * 119.99907 * 5.28318 * 13 11 3 15 15 N 1.34774 * 120.00397 * 185.28817 * 13 11 3 16 16 C 1.46504 * 120.00526 * 185.05119 * 15 13 11 17 17 C 1.52997 * 109.47006 * 184.11593 * 16 15 13 18 18 C 1.50697 * 115.55243 * 306.88964 * 17 16 15 19 19 H 1.08005 * 119.99535 * 98.00278 * 18 17 16 20 20 C 1.37868 * 120.00262 * 277.72316 * 18 17 16 21 21 N 1.31516 * 120.00151 * 198.25677 * 20 18 17 22 22 Si 1.86803 * 119.99892 * 18.25339 * 20 18 17 23 23 H 1.48503 * 109.46808 * 90.70889 * 22 20 18 24 24 H 1.48497 * 109.46998 * 210.70323 * 22 20 18 25 25 H 1.48499 * 109.47405 * 330.70652 * 22 20 18 26 26 C 1.53007 * 117.49554 * 92.56531 * 17 16 15 27 27 C 1.53004 * 117.49515 * 161.22020 * 17 16 15 28 28 H 1.08996 * 109.47635 * 59.99758 * 1 2 3 29 29 H 1.09002 * 109.46567 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47050 * 299.99951 * 1 2 3 31 31 H 1.08993 * 109.46738 * 240.00083 * 2 1 3 32 32 H 1.08996 * 109.47185 * 119.99955 * 2 1 3 33 33 H 1.09007 * 109.47333 * 32.80214 * 4 3 2 34 34 H 1.08998 * 109.47028 * 152.79628 * 4 3 2 35 35 H 1.08001 * 125.78818 * 180.13829 * 7 6 5 36 36 H 1.07996 * 126.58012 * 179.71328 * 8 7 6 37 37 H 1.09000 * 109.47535 * 86.33034 * 10 9 5 38 38 H 1.09005 * 109.47408 * 206.33068 * 10 9 5 39 39 H 1.09004 * 109.47713 * 326.32681 * 10 9 5 40 40 H 0.97007 * 119.99695 * 5.03952 * 15 13 11 41 41 H 1.08994 * 109.46711 * 64.11434 * 16 15 13 42 42 H 1.09006 * 109.46594 * 304.11824 * 16 15 13 43 43 H 0.97006 * 119.99881 * 179.97438 * 21 20 18 44 44 H 1.08996 * 117.49772 * 214.99767 * 26 17 16 45 45 H 1.08996 * 117.49845 * 0.02562 * 26 17 16 46 46 H 1.09004 * 117.49790 * 359.97438 * 27 17 16 47 47 H 1.08998 * 117.49674 * 144.97437 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4545 2.0040 -1.2523 5 6 3.9099 1.6921 -1.4881 6 8 4.9506 2.3321 -0.9304 7 6 6.0976 1.7850 -1.3648 8 6 5.7973 0.7892 -2.2179 9 6 4.3870 0.7293 -2.2973 10 6 3.5743 -0.2286 -3.1295 11 6 2.0662 2.0791 1.1520 12 8 2.4785 3.2204 1.1534 13 6 1.6115 1.4474 2.4278 14 8 1.2900 0.2774 2.4446 15 7 1.5585 2.1770 3.5597 16 6 1.2199 1.5331 4.8313 17 6 1.1284 2.5927 5.9311 18 6 2.3301 3.4915 6.0694 19 1 2.3275 4.4705 5.6133 20 6 3.4305 3.0663 6.7829 21 7 4.3140 3.9409 7.2121 22 14 3.6665 1.2480 7.1401 23 1 4.4627 0.6287 6.0503 24 1 4.3835 1.0861 8.4304 25 1 2.3409 0.5838 7.2237 26 6 -0.2464 3.2031 6.2113 27 6 0.3733 2.2212 7.2089 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8606 1.6131 -2.0786 34 1 2.3201 3.0837 -1.1873 35 1 7.0925 2.0954 -1.0814 36 1 6.4989 0.1571 -2.7418 37 1 3.3393 0.2325 -4.0888 38 1 4.1465 -1.1414 -3.2956 39 1 2.6491 -0.4701 -2.6061 40 1 1.7448 3.1287 3.5324 41 1 1.9922 0.8082 5.0884 42 1 0.2607 1.0239 4.7365 43 1 5.0881 3.6417 7.7144 44 1 -0.2816 4.2547 6.4957 45 1 -1.0856 2.8494 5.6125 46 1 -0.0587 1.2220 7.2658 47 1 0.7459 2.6266 8.1496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345388532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:24 Heat of formation + Delta-G solvation = -37.264935 kcal Electronic energy + Delta-G solvation = -29601.691137 eV Core-core repulsion = 25559.047385 eV Total energy + Delta-G solvation = -4042.643752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.59066 -41.89760 -39.81451 -38.68868 -37.58239 -35.22395 -34.87202 -34.27297 -32.71236 -31.05771 -29.41227 -28.70926 -27.56883 -26.70165 -24.89734 -23.64310 -23.19028 -22.29699 -21.44317 -21.00456 -20.30127 -18.87259 -18.45518 -18.09054 -17.93579 -17.34605 -17.05452 -16.74737 -16.61903 -16.16281 -15.80986 -15.58822 -15.21664 -14.88509 -14.75622 -14.71855 -14.39882 -14.13723 -13.96192 -13.81078 -13.71626 -13.53954 -13.42305 -13.15149 -13.10693 -12.92807 -12.78564 -12.43732 -12.23507 -12.17867 -12.04029 -11.88539 -11.61559 -10.95232 -10.69700 -10.60272 -10.51907 -10.33340 -10.12351 -9.92550 -9.37609 -8.35596 -6.36478 0.31189 0.59004 1.30651 1.34984 1.36021 1.45125 1.68213 2.03399 2.22130 2.33045 2.49386 2.97861 3.18533 3.41829 3.70404 3.92754 3.97660 3.99486 4.03428 4.14245 4.31161 4.35004 4.44209 4.48501 4.50829 4.57182 4.65226 4.71090 4.78551 4.81611 4.87996 4.91948 4.97163 5.01416 5.06568 5.16934 5.21990 5.26289 5.29319 5.41381 5.48042 5.53820 5.67851 5.69429 5.85898 6.21043 6.26983 6.30702 6.66207 6.71154 6.94831 7.31256 8.79537 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.003477 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.464789 B = 8050.242078 C = 9042.124988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.090 3.910 3 N -0.574 5.574 4 C 0.192 3.808 5 C -0.066 4.066 6 O -0.200 6.200 7 C -0.049 4.049 8 C -0.223 4.223 9 C -0.160 4.160 10 C -0.086 4.086 11 C 0.503 3.497 12 O -0.542 6.542 13 C 0.497 3.503 14 O -0.530 6.530 15 N -0.675 5.675 16 C 0.159 3.841 17 C -0.045 4.045 18 C -0.491 4.491 19 H 0.037 0.963 20 C 0.037 3.963 21 N -0.934 5.934 22 Si 0.915 3.085 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.217 1.217 26 C -0.159 4.159 27 C -0.171 4.171 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.090 0.910 35 H 0.223 0.777 36 H 0.171 0.829 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.413 0.587 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.265 0.735 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 -11.760 -21.798 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.031 4.031 3 N -0.307 5.307 4 C 0.070 3.930 5 C -0.117 4.117 6 O -0.097 6.097 7 C -0.117 4.117 8 C -0.241 4.241 9 C -0.162 4.162 10 C -0.142 4.142 11 C 0.286 3.714 12 O -0.419 6.419 13 C 0.278 3.722 14 O -0.410 6.410 15 N -0.325 5.325 16 C 0.036 3.964 17 C -0.046 4.046 18 C -0.529 4.529 19 H 0.055 0.945 20 C -0.163 4.163 21 N -0.572 5.572 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.139 1.139 26 C -0.196 4.196 27 C -0.209 4.209 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.173 0.827 34 H 0.108 0.892 35 H 0.239 0.761 36 H 0.189 0.811 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.250 0.750 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.529 -11.719 -21.457 25.066 hybrid contribution 1.413 0.276 0.649 1.579 sum -4.116 -11.443 -20.808 24.101 Atomic orbital electron populations 1.22044 0.94124 1.03366 1.01570 1.22298 0.95999 0.79602 1.05160 1.48059 1.61256 1.15603 1.05799 1.20169 0.85539 1.00616 0.86648 1.22950 0.90122 0.97977 1.00643 1.84118 1.15387 1.52157 1.58020 1.24745 0.89921 0.97406 0.99579 1.22092 0.95919 1.02240 1.03899 1.20712 0.94546 0.99289 1.01663 1.20392 0.98680 0.96726 0.98435 1.20352 0.79385 0.85898 0.85784 1.90776 1.46061 1.18778 1.86249 1.20131 0.79862 0.86871 0.85315 1.90614 1.48646 1.15842 1.85866 1.45858 1.66131 1.13770 1.06711 1.21139 0.99470 0.94162 0.81613 1.19409 0.92676 0.97741 0.94799 1.20273 0.98864 1.00678 1.33053 0.94482 1.25630 0.95618 1.00968 0.94104 1.70110 1.14090 1.36009 1.37016 0.86279 0.80672 0.82326 0.76730 1.21650 1.21821 1.13879 1.22908 0.95501 0.98153 1.03046 1.23001 1.04243 0.99741 0.93909 0.91155 0.89822 0.94582 0.87631 0.89257 0.82739 0.89156 0.76108 0.81114 0.89666 0.90375 0.90369 0.75004 0.93790 0.90115 0.92566 0.90314 0.87717 0.87908 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.65 71.98 0.69 -2.08 16 2 C 0.09 1.87 5.75 86.38 0.50 2.37 16 3 N -0.57 -14.92 2.48 -827.73 -2.06 -16.97 16 4 C 0.19 4.12 5.72 85.63 0.49 4.61 16 5 C -0.07 -1.65 6.90 24.83 0.17 -1.48 16 6 O -0.20 -6.15 10.65 -2.51 -0.03 -6.18 16 7 C -0.05 -1.14 12.09 66.97 0.81 -0.33 16 8 C -0.22 -4.41 10.87 22.19 0.24 -4.17 16 9 C -0.16 -3.15 6.16 -19.95 -0.12 -3.27 16 10 C -0.09 -0.97 9.87 71.23 0.70 -0.26 16 11 C 0.50 17.56 7.66 87.27 0.67 18.23 16 12 O -0.54 -22.25 16.04 -3.24 -0.05 -22.30 16 13 C 0.50 18.35 7.36 87.27 0.64 18.99 16 14 O -0.53 -19.03 11.79 -3.25 -0.04 -19.06 16 15 N -0.67 -26.99 5.39 -464.41 -2.50 -29.49 16 16 C 0.16 6.34 5.23 86.38 0.45 6.79 16 17 C -0.05 -1.94 0.98 -52.93 -0.05 -1.99 16 18 C -0.49 -26.75 8.49 25.60 0.22 -26.54 16 19 H 0.04 2.27 8.06 -2.91 -0.02 2.24 16 20 C 0.04 2.08 5.44 84.65 0.46 2.54 16 21 N -0.93 -57.70 13.96 21.44 0.30 -57.40 16 22 Si 0.91 43.67 25.38 68.60 1.74 45.41 16 23 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.22 -9.08 5.71 99.48 0.57 -8.51 16 26 C -0.16 -5.82 9.92 30.62 0.30 -5.52 16 27 C -0.17 -6.49 8.08 30.62 0.25 -6.25 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 0.86 6.62 -2.39 -0.02 0.85 16 31 H 0.11 1.49 6.03 -2.39 -0.01 1.48 16 32 H 0.09 2.38 5.57 -2.39 -0.01 2.36 16 33 H 0.16 1.86 7.39 -2.38 -0.02 1.84 16 34 H 0.09 2.21 7.34 -2.39 -0.02 2.20 16 35 H 0.22 3.65 8.06 -2.91 -0.02 3.63 16 36 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.08 0.69 5.77 -2.38 -0.01 0.68 16 40 H 0.41 17.71 7.40 -92.70 -0.69 17.02 16 41 H 0.04 1.88 5.57 -2.39 -0.01 1.86 16 42 H 0.08 2.81 8.05 -2.38 -0.02 2.80 16 43 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 44 H 0.08 3.02 8.14 -2.39 -0.02 3.01 16 45 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 46 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 47 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -73.29 383.14 3.96 -69.33 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: 0.17 Total: 35.03 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 6.42 Total: 1.64 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -4.26 Total: -103.87 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -0.12 Total: -47.54 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.74 Total: 45.41 kcal Total: -73.29 3.96 -69.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345388532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.063 kcal (2) G-P(sol) polarization free energy of solvation -73.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds