Wall clock time and date at job start Tue Mar 31 2020 18:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46881 * 2 1 4 4 C 1.46496 * 119.99946 * 262.39717 * 3 2 1 5 5 C 1.50706 * 109.47240 * 270.00202 * 4 3 2 6 6 C 1.41381 * 126.57820 * 269.71411 * 5 4 3 7 7 C 1.34515 * 106.84258 * 179.83403 * 6 5 4 8 8 O 1.34307 * 108.41443 * 0.43055 * 7 6 5 9 9 C 1.34300 * 109.47889 * 359.72134 * 8 7 6 10 10 C 1.34777 * 119.99924 * 82.40309 * 3 2 1 11 11 O 1.21344 * 120.00211 * 183.82292 * 10 3 2 12 12 C 1.49450 * 119.99720 * 3.81629 * 10 3 2 13 13 O 1.21348 * 120.00505 * 5.89832 * 12 10 3 14 14 N 1.34776 * 119.99752 * 185.62514 * 12 10 3 15 15 C 1.46928 * 120.63009 * 356.26651 * 14 12 10 16 16 C 1.53622 * 108.54493 * 126.36876 * 15 14 12 17 17 C 1.53042 * 109.24286 * 54.85478 * 16 15 14 18 18 C 1.53036 * 109.53744 * 298.51208 * 17 16 15 19 19 H 1.09004 * 109.50093 * 301.41485 * 18 17 16 20 20 C 1.50706 * 109.52670 * 181.33416 * 18 17 16 21 21 H 1.07996 * 119.99428 * 0.14407 * 20 18 17 22 22 C 1.37878 * 120.00144 * 180.14427 * 20 18 17 23 23 N 1.31512 * 120.00079 * 359.97438 * 22 20 18 24 24 Si 1.86793 * 119.99759 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47000 * 90.00466 * 24 22 20 26 26 H 1.48505 * 109.47215 * 209.99704 * 24 22 20 27 27 H 1.48502 * 109.47481 * 330.00178 * 24 22 20 28 28 C 1.46931 * 120.62995 * 176.54179 * 14 12 10 29 29 H 1.09001 * 109.46878 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46873 * 299.99461 * 1 2 3 31 31 H 1.08995 * 109.47002 * 59.99905 * 1 2 3 32 32 H 1.09000 * 109.47361 * 240.00444 * 2 1 3 33 33 H 1.09000 * 109.47466 * 120.00145 * 2 1 3 34 34 H 1.09001 * 109.47369 * 30.00065 * 4 3 2 35 35 H 1.09003 * 109.47192 * 150.00142 * 4 3 2 36 36 H 1.08005 * 126.57884 * 359.97438 * 6 5 4 37 37 H 1.07994 * 125.78987 * 180.11746 * 7 6 5 38 38 H 1.08007 * 125.78937 * 179.97438 * 9 8 7 39 39 H 1.09004 * 109.58393 * 246.20116 * 15 14 12 40 40 H 1.08994 * 109.58809 * 6.62407 * 15 14 12 41 41 H 1.08999 * 109.63129 * 294.86507 * 16 15 14 42 42 H 1.09000 * 109.42933 * 174.72266 * 16 15 14 43 43 H 1.08996 * 109.46147 * 178.49468 * 17 16 15 44 44 H 1.09000 * 109.44798 * 58.52215 * 17 16 15 45 45 H 0.96992 * 120.00283 * 179.97438 * 23 22 20 46 46 H 1.08995 * 109.58628 * 353.37623 * 28 14 12 47 47 H 1.08999 * 109.58334 * 113.79861 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4207 2.0159 -1.2575 5 6 3.8865 1.7641 -1.5008 6 6 4.9626 2.5783 -1.0790 7 6 6.0916 1.9828 -1.5034 8 8 5.7576 0.8624 -2.1644 9 6 4.4217 0.7247 -2.1660 10 6 2.0974 2.0681 1.1570 11 8 2.4355 3.2334 1.1489 12 6 1.7685 1.3943 2.4498 13 8 1.5346 0.2038 2.4713 14 7 1.7372 2.1080 3.5927 15 6 2.1033 3.5309 3.5970 16 6 0.9571 4.3284 4.2375 17 6 0.6553 3.7532 5.6233 18 6 0.2098 2.2955 5.4864 19 1 -0.6732 2.2432 4.8494 20 6 -0.1188 1.7393 6.8480 21 1 -0.0221 2.3636 7.7240 22 6 -0.5427 0.4335 6.9754 23 7 -0.6609 -0.3265 5.9086 24 14 -0.9492 -0.2560 8.6631 25 1 -2.3853 -0.0222 8.9606 26 1 -0.6711 -1.7147 8.6821 27 1 -0.1147 0.4204 9.6884 28 6 1.3420 1.4763 4.8591 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8389 1.5968 -2.0785 35 1 2.2417 3.0894 -1.1964 36 1 4.8919 3.5003 -0.5209 37 1 7.0959 2.3468 -1.3444 38 1 3.8705 -0.0833 -2.6241 39 1 3.0171 3.6713 4.1744 40 1 2.2596 3.8711 2.5734 41 1 0.0672 4.2569 3.6122 42 1 1.2519 5.3733 4.3336 43 1 -0.1395 4.3333 6.0920 44 1 1.5528 3.8022 6.2399 45 1 -0.9588 -1.2452 5.9982 46 1 0.9959 0.4605 4.6683 47 1 2.1950 1.4526 5.5373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350202025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:38 Heat of formation + Delta-G solvation = -23.992076 kcal Electronic energy + Delta-G solvation = -30116.227612 eV Core-core repulsion = 26074.159414 eV Total energy + Delta-G solvation = -4042.068198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70515 -40.66178 -38.36773 -37.17289 -36.03627 -33.60062 -33.20452 -31.71179 -30.74433 -29.76514 -29.66887 -27.26499 -25.39750 -24.96133 -23.46464 -22.21226 -21.74096 -21.58116 -20.61816 -19.47930 -18.53257 -17.65792 -16.92126 -16.67877 -16.18927 -16.01078 -15.67521 -15.52417 -14.88780 -14.72823 -14.49462 -14.01086 -13.77011 -13.66433 -13.35609 -13.17882 -12.92717 -12.89583 -12.74659 -12.56644 -12.38087 -12.11684 -11.95928 -11.78590 -11.56037 -11.30896 -11.03477 -10.95986 -10.62582 -10.44012 -10.24548 -9.99278 -9.94727 -9.64121 -9.16184 -9.11528 -8.90519 -8.71841 -8.46420 -8.23643 -7.80848 -6.02531 -4.10457 1.55957 1.82958 2.27014 2.90747 2.97949 3.29752 3.36999 3.39640 3.67528 3.86626 4.40993 4.53023 4.62768 4.71973 4.85560 5.07772 5.20467 5.28088 5.40902 5.50902 5.58326 5.63794 5.67129 5.70041 5.82547 5.86978 5.93308 5.97987 6.12846 6.24431 6.32793 6.34935 6.41159 6.44043 6.60846 6.65000 6.74865 6.88347 6.93325 6.99614 7.07883 7.20283 7.24681 7.59428 7.82560 7.95387 7.99929 8.19538 8.35952 8.62182 8.93398 9.54998 11.02952 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.003173 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.179031 B = 8823.312553 C = 9478.804106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.083 3.917 3 N -0.580 5.580 4 C 0.179 3.821 5 C -0.198 4.198 6 C -0.191 4.191 7 C -0.049 4.049 8 O -0.179 6.179 9 C -0.027 4.027 10 C 0.514 3.486 11 O -0.516 6.516 12 C 0.495 3.505 13 O -0.517 6.517 14 N -0.565 5.565 15 C 0.045 3.955 16 C -0.129 4.129 17 C -0.113 4.113 18 C 0.042 3.958 19 H 0.029 0.971 20 C -0.519 4.519 21 H 0.059 0.941 22 C 0.063 3.937 23 N -0.882 5.882 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.108 3.892 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.150 0.850 37 H 0.201 0.799 38 H 0.201 0.799 39 H 0.055 0.945 40 H 0.149 0.851 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.263 0.737 46 H 0.124 0.876 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.737 3.751 -17.282 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.038 4.038 3 N -0.313 5.313 4 C 0.057 3.943 5 C -0.200 4.200 6 C -0.211 4.211 7 C -0.116 4.116 8 O -0.074 6.074 9 C -0.096 4.096 10 C 0.299 3.701 11 O -0.394 6.394 12 C 0.277 3.723 13 O -0.395 6.395 14 N -0.296 5.296 15 C -0.077 4.077 16 C -0.167 4.167 17 C -0.151 4.151 18 C 0.023 3.977 19 H 0.047 0.953 20 C -0.558 4.558 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.519 5.519 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.012 4.012 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.168 0.832 37 H 0.218 0.782 38 H 0.217 0.783 39 H 0.074 0.926 40 H 0.165 0.835 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.142 0.858 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.925 3.337 -17.434 19.868 hybrid contribution -0.372 -0.249 1.150 1.234 sum 8.553 3.088 -16.284 18.651 Atomic orbital electron populations 1.22069 0.95378 1.02527 1.01816 1.22352 0.95143 0.81090 1.05260 1.47992 1.62379 1.15081 1.05825 1.19772 0.88865 1.00115 0.85525 1.20810 0.97230 0.97514 1.04479 1.21837 0.91586 1.02752 1.04887 1.24017 1.00337 0.87188 1.00070 1.84061 1.24037 1.39246 1.60061 1.23886 0.80564 1.00959 1.04207 1.20759 0.77441 0.86161 0.85709 1.90210 1.47953 1.16294 1.84971 1.19746 0.80533 0.87242 0.84820 1.90590 1.49336 1.14284 1.85279 1.48481 1.61831 1.10963 1.08354 1.23313 0.96734 0.80172 1.07431 1.21967 0.98316 0.98147 0.98303 1.21665 1.00097 0.98972 0.94368 1.18957 0.93396 0.89136 0.96244 0.95321 1.21097 1.45226 0.96925 0.92518 0.92300 1.25047 0.95114 0.97148 0.96703 1.69866 1.46179 1.07917 1.27986 0.86579 0.78687 0.78211 0.84446 1.20687 1.21168 1.19902 1.22478 0.97223 1.01703 0.79755 0.91358 0.91860 0.93494 0.91491 0.85525 0.89371 0.88583 0.83176 0.78219 0.78273 0.92627 0.83517 0.92498 0.92334 0.93149 0.93268 0.92671 0.85805 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.82 37.16 0.36 -1.72 16 2 C 0.08 1.07 5.72 -4.04 -0.02 1.04 16 3 N -0.58 -7.92 2.48 -175.56 -0.43 -8.36 16 4 C 0.18 1.94 5.91 -5.19 -0.03 1.91 16 5 C -0.20 -2.17 5.75 -104.74 -0.60 -2.78 16 6 C -0.19 -2.16 10.87 -39.70 -0.43 -2.59 16 7 C -0.05 -0.48 12.09 29.42 0.36 -0.12 16 8 O -0.18 -1.89 10.65 5.71 0.06 -1.83 16 9 C -0.03 -0.26 12.01 29.41 0.35 0.09 16 10 C 0.51 8.67 7.59 -11.58 -0.09 8.59 16 11 O -0.52 -8.82 12.57 5.50 0.07 -8.75 16 12 C 0.49 9.93 7.33 -11.59 -0.08 9.85 16 13 O -0.52 -11.21 11.74 5.50 0.06 -11.15 16 14 N -0.57 -11.82 2.97 -173.01 -0.51 -12.34 16 15 C 0.05 0.82 6.29 -3.49 -0.02 0.79 16 16 C -0.13 -2.31 6.10 -26.39 -0.16 -2.47 16 17 C -0.11 -2.35 5.11 -26.69 -0.14 -2.49 16 18 C 0.04 1.04 2.25 -91.65 -0.21 0.83 16 19 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 20 C -0.52 -14.03 8.57 -34.44 -0.29 -14.32 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 23 N -0.88 -25.10 11.39 55.43 0.63 -24.47 16 24 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 C 0.11 2.62 5.39 -3.71 -0.02 2.60 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.04 7.26 -51.93 -0.38 0.67 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.65 8.01 -51.93 -0.42 0.23 16 33 H 0.13 2.01 5.14 -52.24 -0.27 1.74 16 34 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.10 1.10 7.37 -51.93 -0.38 0.72 16 36 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.20 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.20 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.15 2.59 3.71 -57.19 -0.21 2.38 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.12 3.40 5.14 -51.93 -0.27 3.14 16 47 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -30.80 376.94 -7.54 -38.34 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.96 Total: 5.97 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.12 Total: 0.84 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.32 Total: -45.16 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.19 Total: -21.73 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.80 -7.54 -38.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350202025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.345 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds