Wall clock time and date at job start Tue Mar 31 2020 18:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46881 * 2 1 4 4 C 1.46496 * 119.99946 * 262.39717 * 3 2 1 5 5 C 1.50706 * 109.47240 * 270.00202 * 4 3 2 6 6 C 1.41381 * 126.57820 * 269.71411 * 5 4 3 7 7 C 1.34515 * 106.84258 * 179.83403 * 6 5 4 8 8 O 1.34307 * 108.41443 * 0.43055 * 7 6 5 9 9 C 1.34300 * 109.47889 * 359.72134 * 8 7 6 10 10 C 1.34777 * 119.99924 * 82.40309 * 3 2 1 11 11 O 1.21344 * 120.00211 * 183.82292 * 10 3 2 12 12 C 1.49450 * 119.99720 * 3.81629 * 10 3 2 13 13 O 1.21348 * 120.00505 * 5.89832 * 12 10 3 14 14 N 1.34776 * 119.99752 * 185.62514 * 12 10 3 15 15 C 1.46928 * 120.63009 * 356.26651 * 14 12 10 16 16 C 1.53622 * 108.54493 * 126.36876 * 15 14 12 17 17 C 1.53042 * 109.24286 * 54.85478 * 16 15 14 18 18 C 1.53036 * 109.53744 * 298.51208 * 17 16 15 19 19 H 1.09004 * 109.50093 * 301.41485 * 18 17 16 20 20 C 1.50706 * 109.52670 * 181.33416 * 18 17 16 21 21 H 1.07996 * 119.99428 * 0.14407 * 20 18 17 22 22 C 1.37878 * 120.00144 * 180.14427 * 20 18 17 23 23 N 1.31512 * 120.00079 * 359.97438 * 22 20 18 24 24 Si 1.86793 * 119.99759 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47000 * 90.00466 * 24 22 20 26 26 H 1.48505 * 109.47215 * 209.99704 * 24 22 20 27 27 H 1.48502 * 109.47481 * 330.00178 * 24 22 20 28 28 C 1.46931 * 120.62995 * 176.54179 * 14 12 10 29 29 H 1.09001 * 109.46878 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46873 * 299.99461 * 1 2 3 31 31 H 1.08995 * 109.47002 * 59.99905 * 1 2 3 32 32 H 1.09000 * 109.47361 * 240.00444 * 2 1 3 33 33 H 1.09000 * 109.47466 * 120.00145 * 2 1 3 34 34 H 1.09001 * 109.47369 * 30.00065 * 4 3 2 35 35 H 1.09003 * 109.47192 * 150.00142 * 4 3 2 36 36 H 1.08005 * 126.57884 * 359.97438 * 6 5 4 37 37 H 1.07994 * 125.78987 * 180.11746 * 7 6 5 38 38 H 1.08007 * 125.78937 * 179.97438 * 9 8 7 39 39 H 1.09004 * 109.58393 * 246.20116 * 15 14 12 40 40 H 1.08994 * 109.58809 * 6.62407 * 15 14 12 41 41 H 1.08999 * 109.63129 * 294.86507 * 16 15 14 42 42 H 1.09000 * 109.42933 * 174.72266 * 16 15 14 43 43 H 1.08996 * 109.46147 * 178.49468 * 17 16 15 44 44 H 1.09000 * 109.44798 * 58.52215 * 17 16 15 45 45 H 0.96992 * 120.00283 * 179.97438 * 23 22 20 46 46 H 1.08995 * 109.58628 * 353.37623 * 28 14 12 47 47 H 1.08999 * 109.58334 * 113.79861 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4207 2.0159 -1.2575 5 6 3.8865 1.7641 -1.5008 6 6 4.9626 2.5783 -1.0790 7 6 6.0916 1.9828 -1.5034 8 8 5.7576 0.8624 -2.1644 9 6 4.4217 0.7247 -2.1660 10 6 2.0974 2.0681 1.1570 11 8 2.4355 3.2334 1.1489 12 6 1.7685 1.3943 2.4498 13 8 1.5346 0.2038 2.4713 14 7 1.7372 2.1080 3.5927 15 6 2.1033 3.5309 3.5970 16 6 0.9571 4.3284 4.2375 17 6 0.6553 3.7532 5.6233 18 6 0.2098 2.2955 5.4864 19 1 -0.6732 2.2432 4.8494 20 6 -0.1188 1.7393 6.8480 21 1 -0.0221 2.3636 7.7240 22 6 -0.5427 0.4335 6.9754 23 7 -0.6609 -0.3265 5.9086 24 14 -0.9492 -0.2560 8.6631 25 1 -2.3853 -0.0222 8.9606 26 1 -0.6711 -1.7147 8.6821 27 1 -0.1147 0.4204 9.6884 28 6 1.3420 1.4763 4.8591 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8389 1.5968 -2.0785 35 1 2.2417 3.0894 -1.1964 36 1 4.8919 3.5003 -0.5209 37 1 7.0959 2.3468 -1.3444 38 1 3.8705 -0.0833 -2.6241 39 1 3.0171 3.6713 4.1744 40 1 2.2596 3.8711 2.5734 41 1 0.0672 4.2569 3.6122 42 1 1.2519 5.3733 4.3336 43 1 -0.1395 4.3333 6.0920 44 1 1.5528 3.8022 6.2399 45 1 -0.9588 -1.2452 5.9982 46 1 0.9959 0.4605 4.6683 47 1 2.1950 1.4526 5.5373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350202025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:37 Heat of formation + Delta-G solvation = -42.124850 kcal Electronic energy + Delta-G solvation = -30117.013908 eV Core-core repulsion = 26074.159414 eV Total energy + Delta-G solvation = -4042.854494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.46386 -42.06684 -39.85098 -38.70492 -37.35074 -35.17734 -34.42294 -33.43319 -31.76502 -31.47829 -30.61849 -28.41493 -27.15272 -26.55150 -24.70012 -23.72196 -23.22766 -22.40417 -21.70054 -20.85625 -20.06274 -18.62572 -18.51696 -17.95270 -17.76450 -17.27836 -16.94854 -16.76635 -16.47824 -15.94035 -15.75640 -15.47576 -15.28087 -14.92714 -14.63934 -14.56596 -14.43442 -14.18822 -13.90073 -13.78106 -13.65939 -13.48168 -13.32332 -13.16017 -12.88775 -12.80519 -12.44069 -12.37656 -12.29368 -12.23877 -12.03279 -11.71474 -11.28175 -11.05411 -10.94694 -10.75076 -10.54105 -10.07127 -9.71662 -9.49513 -9.45231 -8.11925 -6.28334 0.38580 0.81699 1.26477 1.41488 1.42290 1.52833 1.79392 2.18843 2.32003 2.41190 2.54001 3.13835 3.19795 3.86834 3.90399 4.06714 4.14372 4.16836 4.17772 4.34835 4.36937 4.47702 4.57586 4.61325 4.64512 4.72927 4.78579 4.80472 4.81283 4.90335 5.03251 5.09594 5.15688 5.18139 5.22976 5.28242 5.30008 5.32148 5.46512 5.54665 5.55910 5.64211 5.84201 5.92703 5.98368 6.19750 6.29003 6.44643 6.74800 6.83173 7.04672 7.41191 8.91933 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.003173 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.179031 B = 8823.312553 C = 9478.804106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.083 3.917 3 N -0.567 5.567 4 C 0.180 3.820 5 C -0.220 4.220 6 C -0.220 4.220 7 C -0.046 4.046 8 O -0.188 6.188 9 C -0.018 4.018 10 C 0.517 3.483 11 O -0.521 6.521 12 C 0.484 3.516 13 O -0.541 6.541 14 N -0.576 5.576 15 C 0.045 3.955 16 C -0.121 4.121 17 C -0.107 4.107 18 C 0.041 3.959 19 H -0.011 1.011 20 C -0.538 4.538 21 H 0.061 0.939 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.958 3.042 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.265 1.265 28 C 0.123 3.877 29 H 0.076 0.924 30 H 0.018 0.982 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.142 0.858 37 H 0.229 0.771 38 H 0.235 0.765 39 H 0.066 0.934 40 H 0.160 0.840 41 H 0.046 0.954 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.262 0.738 46 H 0.087 0.913 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.646 4.213 -18.889 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.038 4.038 3 N -0.298 5.298 4 C 0.059 3.941 5 C -0.223 4.223 6 C -0.239 4.239 7 C -0.113 4.113 8 O -0.083 6.083 9 C -0.087 4.087 10 C 0.300 3.700 11 O -0.400 6.400 12 C 0.267 3.733 13 O -0.420 6.420 14 N -0.307 5.307 15 C -0.075 4.075 16 C -0.159 4.159 17 C -0.145 4.145 18 C 0.022 3.978 19 H 0.007 0.993 20 C -0.576 4.576 21 H 0.079 0.921 22 C -0.187 4.187 23 N -0.550 5.550 24 Si 0.784 3.216 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.189 1.189 28 C 0.002 3.998 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.113 0.887 34 H 0.144 0.856 35 H 0.107 0.893 36 H 0.160 0.840 37 H 0.246 0.754 38 H 0.251 0.749 39 H 0.084 0.916 40 H 0.176 0.824 41 H 0.065 0.935 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.845 3.819 -19.076 21.804 hybrid contribution -0.637 -0.433 1.564 1.743 sum 9.207 3.386 -17.512 20.073 Atomic orbital electron populations 1.22013 0.95500 1.02837 1.00845 1.22329 0.94936 0.80652 1.05890 1.48050 1.60827 1.15168 1.05744 1.20016 0.89591 0.99806 0.84638 1.20881 0.97064 0.98468 1.05866 1.21983 0.92739 1.03188 1.06027 1.24549 1.01275 0.86518 0.98919 1.84085 1.24670 1.39452 1.60115 1.24523 0.80227 1.00985 1.02923 1.20058 0.78316 0.86149 0.85450 1.90177 1.48783 1.16208 1.84863 1.20480 0.79703 0.87172 0.85956 1.90599 1.49903 1.15467 1.86034 1.48505 1.62329 1.12187 1.07703 1.23517 0.97138 0.78410 1.08414 1.21926 0.97925 1.00018 0.96056 1.21560 1.00255 0.96202 0.96453 1.18877 0.92153 0.92100 0.94646 0.99269 1.21473 1.45272 0.97329 0.93521 0.92113 1.25853 0.94998 0.97530 1.00279 1.70040 1.46924 1.07982 1.30064 0.85551 0.78603 0.77351 0.80133 1.20138 1.21056 1.18915 1.21913 0.96508 1.00082 0.81334 0.90523 0.96265 0.90823 0.86926 0.88746 0.85621 0.89319 0.84043 0.75428 0.74872 0.91561 0.82450 0.93481 0.88534 0.92835 0.92670 0.92928 0.89449 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.82 71.98 0.71 -3.19 16 2 C 0.08 2.02 5.72 86.38 0.49 2.51 16 3 N -0.57 -14.69 2.48 -827.72 -2.05 -16.74 16 4 C 0.18 3.43 5.91 85.64 0.51 3.93 16 5 C -0.22 -4.33 5.75 -19.94 -0.11 -4.44 16 6 C -0.22 -4.68 10.87 22.19 0.24 -4.44 16 7 C -0.05 -0.80 12.09 66.97 0.81 0.01 16 8 O -0.19 -3.49 10.65 -2.49 -0.03 -3.52 16 9 C -0.02 -0.29 12.01 66.97 0.80 0.52 16 10 C 0.52 17.39 7.59 87.27 0.66 18.06 16 11 O -0.52 -17.50 12.57 -3.23 -0.04 -17.54 16 12 C 0.48 20.16 7.33 87.27 0.64 20.80 16 13 O -0.54 -24.79 11.74 -3.24 -0.04 -24.83 16 14 N -0.58 -24.92 2.97 -819.64 -2.43 -27.35 16 15 C 0.05 1.63 6.29 86.51 0.54 2.17 16 16 C -0.12 -4.23 6.10 30.82 0.19 -4.04 16 17 C -0.11 -4.44 5.11 30.62 0.16 -4.28 16 18 C 0.04 2.14 2.25 -11.46 -0.03 2.12 16 19 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 20 C -0.54 -29.85 8.57 25.60 0.22 -29.63 16 21 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 22 C 0.01 0.74 5.30 84.66 0.45 1.19 16 23 N -0.91 -54.15 11.39 21.45 0.24 -53.91 16 24 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 27 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.12 6.27 5.39 86.36 0.47 6.73 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 30 H 0.02 0.63 7.26 -2.39 -0.02 0.62 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.11 1.74 8.01 -2.39 -0.02 1.72 16 33 H 0.09 3.03 5.14 -7.27 -0.04 2.99 16 34 H 0.13 1.47 8.07 -2.39 -0.02 1.45 16 35 H 0.09 1.86 7.37 -2.39 -0.02 1.85 16 36 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 37 H 0.23 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.24 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.16 5.43 3.71 -85.71 -0.32 5.11 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 46 H 0.09 5.12 5.14 -2.39 -0.01 5.11 16 47 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -71.03 376.94 5.07 -65.96 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.64 Total: 23.90 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.75 Total: 8.01 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -4.24 Total: -98.00 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.11 Total: -45.88 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -71.03 5.07 -65.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350202025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.832 kcal (2) G-P(sol) polarization free energy of solvation -71.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds