Wall clock time and date at job start Tue Mar 31 2020 18:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47305 * 2 1 4 4 C 1.46496 * 120.00047 * 85.05079 * 3 2 1 5 5 C 1.50694 * 109.47038 * 89.99918 * 4 3 2 6 6 C 1.41383 * 126.57799 * 90.00555 * 5 4 3 7 7 C 1.34513 * 106.84559 * 179.73599 * 6 5 4 8 8 O 1.34305 * 108.41460 * 0.25567 * 7 6 5 9 9 C 1.34305 * 109.47984 * 0.02562 * 8 7 6 10 10 C 1.34776 * 120.00076 * 265.05337 * 3 2 1 11 11 O 1.21350 * 120.00133 * 185.02841 * 10 3 2 12 12 C 1.49456 * 120.00162 * 5.03521 * 10 3 2 13 13 O 1.21345 * 119.99959 * 85.49279 * 12 10 3 14 14 N 1.34776 * 119.99716 * 265.49698 * 12 10 3 15 15 C 1.46921 * 120.63260 * 354.94346 * 14 12 10 16 16 C 1.53188 * 108.77745 * 233.58688 * 15 14 12 17 17 C 1.53042 * 109.31106 * 305.36376 * 16 15 14 18 18 C 1.53040 * 109.53741 * 61.36541 * 17 16 15 19 19 H 1.08998 * 109.50172 * 58.58499 * 18 17 16 20 20 C 1.50708 * 109.49799 * 178.68400 * 18 17 16 21 21 H 1.07999 * 119.99453 * 359.97438 * 20 18 17 22 22 C 1.37870 * 119.99958 * 179.97438 * 20 18 17 23 23 N 1.31518 * 120.00494 * 0.02562 * 22 20 18 24 24 Si 1.86796 * 120.00072 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47065 * 60.00212 * 24 22 20 26 26 H 1.48505 * 109.47556 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47246 * 300.00308 * 24 22 20 28 28 C 1.46930 * 120.62776 * 174.66119 * 14 12 10 29 29 H 1.08995 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46259 * 299.99890 * 1 2 3 31 31 H 1.08997 * 109.47472 * 59.99598 * 1 2 3 32 32 H 1.09002 * 109.46813 * 240.00874 * 2 1 3 33 33 H 1.08997 * 109.47472 * 120.00402 * 2 1 3 34 34 H 1.09006 * 109.46803 * 330.00397 * 4 3 2 35 35 H 1.08996 * 109.47311 * 210.00501 * 4 3 2 36 36 H 1.08009 * 126.57731 * 359.97438 * 6 5 4 37 37 H 1.07996 * 125.79218 * 180.22662 * 7 6 5 38 38 H 1.08000 * 125.79255 * 179.97438 * 9 8 7 39 39 H 1.08997 * 109.58531 * 353.37421 * 15 14 12 40 40 H 1.09001 * 109.58847 * 113.65425 * 15 14 12 41 41 H 1.09000 * 109.49928 * 65.30955 * 16 15 14 42 42 H 1.08998 * 109.50360 * 185.41517 * 16 15 14 43 43 H 1.09000 * 109.46451 * 181.38448 * 17 16 15 44 44 H 1.08998 * 109.46313 * 301.35489 * 17 16 15 45 45 H 0.96993 * 120.00660 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.58523 * 246.19909 * 28 14 12 47 47 H 1.08998 * 109.58636 * 6.63082 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1594 2.1083 1.2640 5 6 3.5423 1.8857 1.8199 6 6 4.6893 2.6720 1.5653 7 6 5.7003 2.1241 2.2632 8 8 5.2302 1.0504 2.9189 9 6 3.9231 0.8986 2.6505 10 6 2.3380 1.9830 -1.1628 11 8 2.8280 3.0932 -1.1569 12 6 2.0886 1.2832 -2.4597 13 8 0.9994 1.3572 -2.9894 14 7 3.0736 0.5699 -3.0407 15 6 4.4276 0.5606 -2.4705 16 6 5.4257 0.9548 -3.5636 17 6 5.2456 0.0310 -4.7704 18 6 3.8297 0.1892 -5.3293 19 1 3.6650 1.2283 -5.6144 20 6 3.6636 -0.6968 -6.5370 21 1 4.4858 -1.3112 -6.8730 22 6 2.4622 -0.7230 -7.2129 23 7 1.4612 0.0256 -6.8040 24 14 2.2566 -1.8207 -8.7103 25 1 2.4800 -3.2361 -8.3208 26 1 0.8825 -1.6668 -9.2520 27 1 3.2441 -1.4313 -9.7488 28 6 2.8121 -0.2182 -4.2529 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.4186 1.7453 1.9765 35 1 2.0048 3.1731 1.0898 36 1 4.7427 3.5472 0.9346 37 1 6.7175 2.4859 2.2912 38 1 3.2847 0.1191 3.0395 39 1 4.4833 1.2757 -1.6497 40 1 4.6619 -0.4379 -2.1016 41 1 5.2460 1.9867 -3.8655 42 1 6.4416 0.8589 -3.1806 43 1 5.9712 0.2935 -5.5403 44 1 5.4008 -1.0030 -4.4626 45 1 0.6158 0.0069 -7.2792 46 1 2.9183 -1.2795 -4.0287 47 1 1.8016 -0.0170 -4.6085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350202045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:41 Heat of formation + Delta-G solvation = -50.882614 kcal Electronic energy + Delta-G solvation = -30329.055698 eV Core-core repulsion = 26285.821439 eV Total energy + Delta-G solvation = -4043.234259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.71403 -40.55331 -38.50874 -36.72354 -36.31104 -33.68376 -33.38300 -31.84823 -30.82028 -29.93710 -29.74272 -27.38534 -25.36334 -25.01366 -23.65081 -22.23059 -21.85947 -21.64190 -20.61737 -19.41849 -18.31681 -17.72143 -17.38052 -16.84728 -16.24000 -16.04506 -15.92545 -15.14874 -14.86115 -14.60982 -14.30677 -14.16933 -13.90759 -13.75087 -13.46168 -13.33466 -12.95049 -12.89277 -12.71143 -12.65200 -12.57307 -12.22694 -12.09614 -11.89720 -11.57648 -11.28425 -11.03486 -10.95683 -10.87494 -10.55525 -10.41097 -10.26541 -9.98033 -9.94511 -9.24732 -9.16240 -8.95405 -8.89819 -8.69312 -8.47057 -7.90117 -6.01733 -4.11011 1.54730 2.20946 2.42649 2.76769 2.97269 3.07657 3.30924 3.36964 3.38095 3.73863 4.40099 4.45568 4.60868 4.68289 4.79280 4.82473 5.10857 5.22120 5.26732 5.28625 5.30373 5.46697 5.48274 5.57866 5.63788 5.66140 5.74436 5.88006 5.94270 5.97101 6.16117 6.18987 6.28155 6.31867 6.35955 6.54080 6.61572 6.79658 6.92412 6.93087 7.01756 7.11083 7.13935 7.55823 7.81396 7.91211 7.96298 8.06201 8.32378 8.52129 8.92788 9.54743 11.03576 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.003430 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.169579 B = 8160.437987 C = 8989.407086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.103 3.897 3 N -0.597 5.597 4 C 0.184 3.816 5 C -0.197 4.197 6 C -0.189 4.189 7 C -0.048 4.048 8 O -0.178 6.178 9 C -0.030 4.030 10 C 0.520 3.480 11 O -0.515 6.515 12 C 0.507 3.493 13 O -0.508 6.508 14 N -0.588 5.588 15 C 0.109 3.891 16 C -0.132 4.132 17 C -0.110 4.110 18 C 0.040 3.960 19 H 0.031 0.969 20 C -0.522 4.522 21 H 0.059 0.941 22 C 0.063 3.937 23 N -0.880 5.880 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.111 3.889 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.201 0.799 38 H 0.200 0.800 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.265 0.735 46 H 0.049 0.951 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.222 -0.052 20.966 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 N -0.332 5.332 4 C 0.061 3.939 5 C -0.199 4.199 6 C -0.208 4.208 7 C -0.115 4.115 8 O -0.074 6.074 9 C -0.098 4.098 10 C 0.303 3.697 11 O -0.389 6.389 12 C 0.288 3.712 13 O -0.383 6.383 14 N -0.322 5.322 15 C -0.015 4.015 16 C -0.170 4.170 17 C -0.148 4.148 18 C 0.020 3.980 19 H 0.049 0.951 20 C -0.560 4.560 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.517 5.517 24 Si 0.721 3.279 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.008 4.008 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.168 0.832 37 H 0.218 0.782 38 H 0.216 0.784 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.852 0.454 20.787 21.145 hybrid contribution -0.158 -0.446 -0.935 1.048 sum 3.694 0.008 19.851 20.192 Atomic orbital electron populations 1.22223 0.95041 1.02742 1.03196 1.21648 0.95258 0.81573 1.03484 1.48071 1.65131 1.14600 1.05398 1.19705 0.91396 0.98632 0.84126 1.20804 0.97797 0.98502 1.02808 1.21852 0.92233 1.03219 1.03517 1.24022 1.00156 0.89067 0.98304 1.84063 1.23880 1.41790 1.57648 1.23855 0.82612 1.01374 1.01998 1.20798 0.77148 0.86730 0.84993 1.90739 1.41847 1.19613 1.86688 1.19983 0.85720 0.79965 0.85578 1.90820 1.23883 1.59787 1.63760 1.48607 1.08595 1.46110 1.28898 1.21679 0.82708 1.00970 0.96123 1.21915 0.97249 1.01076 0.96755 1.21636 1.00309 0.97545 0.95301 1.19054 0.88495 0.97947 0.92465 0.95053 1.21033 0.98214 1.25626 1.11161 0.92324 1.25054 0.96071 0.95481 0.97370 1.69874 1.03268 1.38574 1.40031 0.86644 0.77189 0.80982 0.83106 1.20241 1.21251 1.20272 1.22536 1.06087 0.91490 0.80699 0.91259 0.92449 0.91018 0.89908 0.90169 0.89360 0.88787 0.83174 0.78214 0.78370 0.91340 0.91702 0.91842 0.92042 0.92796 0.93102 0.92530 0.93294 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 10.24 37.16 0.38 -1.48 16 2 C 0.10 1.14 5.98 -4.04 -0.02 1.12 16 3 N -0.60 -7.83 2.46 -175.57 -0.43 -8.26 16 4 C 0.18 1.94 5.90 -5.20 -0.03 1.91 16 5 C -0.20 -2.06 5.75 -104.75 -0.60 -2.66 16 6 C -0.19 -2.10 10.87 -39.70 -0.43 -2.53 16 7 C -0.05 -0.45 12.09 29.42 0.36 -0.10 16 8 O -0.18 -1.78 10.65 5.70 0.06 -1.71 16 9 C -0.03 -0.26 12.01 29.42 0.35 0.09 16 10 C 0.52 9.17 5.57 -11.58 -0.06 9.10 16 11 O -0.51 -10.12 16.53 5.50 0.09 -10.03 16 12 C 0.51 10.51 5.62 -11.58 -0.07 10.44 16 13 O -0.51 -12.36 16.19 5.50 0.09 -12.27 16 14 N -0.59 -11.85 2.94 -173.01 -0.51 -12.35 16 15 C 0.11 1.81 6.32 -3.72 -0.02 1.78 16 16 C -0.13 -2.24 6.08 -26.61 -0.16 -2.41 16 17 C -0.11 -2.19 5.10 -26.69 -0.14 -2.32 16 18 C 0.04 0.97 2.26 -91.42 -0.21 0.76 16 19 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 20 C -0.52 -13.91 8.56 -34.44 -0.29 -14.21 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 22 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 23 N -0.88 -25.35 11.41 55.43 0.63 -24.72 16 24 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.11 2.61 5.44 -3.48 -0.02 2.60 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.01 7.81 -51.93 -0.41 0.61 16 32 H 0.08 1.08 6.78 -51.93 -0.35 0.73 16 33 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 34 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 35 H 0.09 1.12 7.50 -51.93 -0.39 0.73 16 36 H 0.15 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.20 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.07 1.10 6.23 -51.93 -0.32 0.78 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.12 3.40 5.14 -51.93 -0.27 3.13 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -33.03 387.27 -7.51 -40.54 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.19 Total: 3.29 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.06 Total: 3.74 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.31 Total: -45.33 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.24 Total: -24.01 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.03 -7.51 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350202045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.341 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds