Wall clock time and date at job start Tue Mar 31 2020 18:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47305 * 2 1 4 4 C 1.46496 * 120.00047 * 85.05079 * 3 2 1 5 5 C 1.50694 * 109.47038 * 89.99918 * 4 3 2 6 6 C 1.41383 * 126.57799 * 90.00555 * 5 4 3 7 7 C 1.34513 * 106.84559 * 179.73599 * 6 5 4 8 8 O 1.34305 * 108.41460 * 0.25567 * 7 6 5 9 9 C 1.34305 * 109.47984 * 0.02562 * 8 7 6 10 10 C 1.34776 * 120.00076 * 265.05337 * 3 2 1 11 11 O 1.21350 * 120.00133 * 185.02841 * 10 3 2 12 12 C 1.49456 * 120.00162 * 5.03521 * 10 3 2 13 13 O 1.21345 * 119.99959 * 85.49279 * 12 10 3 14 14 N 1.34776 * 119.99716 * 265.49698 * 12 10 3 15 15 C 1.46921 * 120.63260 * 354.94346 * 14 12 10 16 16 C 1.53188 * 108.77745 * 233.58688 * 15 14 12 17 17 C 1.53042 * 109.31106 * 305.36376 * 16 15 14 18 18 C 1.53040 * 109.53741 * 61.36541 * 17 16 15 19 19 H 1.08998 * 109.50172 * 58.58499 * 18 17 16 20 20 C 1.50708 * 109.49799 * 178.68400 * 18 17 16 21 21 H 1.07999 * 119.99453 * 359.97438 * 20 18 17 22 22 C 1.37870 * 119.99958 * 179.97438 * 20 18 17 23 23 N 1.31518 * 120.00494 * 0.02562 * 22 20 18 24 24 Si 1.86796 * 120.00072 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47065 * 60.00212 * 24 22 20 26 26 H 1.48505 * 109.47556 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47246 * 300.00308 * 24 22 20 28 28 C 1.46930 * 120.62776 * 174.66119 * 14 12 10 29 29 H 1.08995 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46259 * 299.99890 * 1 2 3 31 31 H 1.08997 * 109.47472 * 59.99598 * 1 2 3 32 32 H 1.09002 * 109.46813 * 240.00874 * 2 1 3 33 33 H 1.08997 * 109.47472 * 120.00402 * 2 1 3 34 34 H 1.09006 * 109.46803 * 330.00397 * 4 3 2 35 35 H 1.08996 * 109.47311 * 210.00501 * 4 3 2 36 36 H 1.08009 * 126.57731 * 359.97438 * 6 5 4 37 37 H 1.07996 * 125.79218 * 180.22662 * 7 6 5 38 38 H 1.08000 * 125.79255 * 179.97438 * 9 8 7 39 39 H 1.08997 * 109.58531 * 353.37421 * 15 14 12 40 40 H 1.09001 * 109.58847 * 113.65425 * 15 14 12 41 41 H 1.09000 * 109.49928 * 65.30955 * 16 15 14 42 42 H 1.08998 * 109.50360 * 185.41517 * 16 15 14 43 43 H 1.09000 * 109.46451 * 181.38448 * 17 16 15 44 44 H 1.08998 * 109.46313 * 301.35489 * 17 16 15 45 45 H 0.96993 * 120.00660 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.58523 * 246.19909 * 28 14 12 47 47 H 1.08998 * 109.58636 * 6.63082 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1594 2.1083 1.2640 5 6 3.5423 1.8857 1.8199 6 6 4.6893 2.6720 1.5653 7 6 5.7003 2.1241 2.2632 8 8 5.2302 1.0504 2.9189 9 6 3.9231 0.8986 2.6505 10 6 2.3380 1.9830 -1.1628 11 8 2.8280 3.0932 -1.1569 12 6 2.0886 1.2832 -2.4597 13 8 0.9994 1.3572 -2.9894 14 7 3.0736 0.5699 -3.0407 15 6 4.4276 0.5606 -2.4705 16 6 5.4257 0.9548 -3.5636 17 6 5.2456 0.0310 -4.7704 18 6 3.8297 0.1892 -5.3293 19 1 3.6650 1.2283 -5.6144 20 6 3.6636 -0.6968 -6.5370 21 1 4.4858 -1.3112 -6.8730 22 6 2.4622 -0.7230 -7.2129 23 7 1.4612 0.0256 -6.8040 24 14 2.2566 -1.8207 -8.7103 25 1 2.4800 -3.2361 -8.3208 26 1 0.8825 -1.6668 -9.2520 27 1 3.2441 -1.4313 -9.7488 28 6 2.8121 -0.2182 -4.2529 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.4186 1.7453 1.9765 35 1 2.0048 3.1731 1.0898 36 1 4.7427 3.5472 0.9346 37 1 6.7175 2.4859 2.2912 38 1 3.2847 0.1191 3.0395 39 1 4.4833 1.2757 -1.6497 40 1 4.6619 -0.4379 -2.1016 41 1 5.2460 1.9867 -3.8655 42 1 6.4416 0.8589 -3.1806 43 1 5.9712 0.2935 -5.5403 44 1 5.4008 -1.0030 -4.4626 45 1 0.6158 0.0069 -7.2792 46 1 2.9183 -1.2795 -4.0287 47 1 1.8016 -0.0170 -4.6085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350202045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:40 Heat of formation + Delta-G solvation = -71.817187 kcal Electronic energy + Delta-G solvation = -30329.963489 eV Core-core repulsion = 26285.821439 eV Total energy + Delta-G solvation = -4044.142050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.42794 -41.99938 -39.99610 -38.42827 -37.47991 -35.34068 -34.45367 -33.56856 -31.69169 -31.67542 -30.64120 -28.54348 -27.10687 -26.54569 -24.80974 -23.65569 -23.37817 -22.37544 -21.59599 -20.90533 -19.65543 -19.05716 -18.40396 -18.17779 -18.04023 -17.49837 -16.82502 -16.55180 -16.17430 -15.87527 -15.81431 -15.34904 -15.31181 -15.03389 -14.82778 -14.57438 -14.40609 -14.18540 -13.96474 -13.87747 -13.65285 -13.62189 -13.37188 -13.00493 -12.85703 -12.76601 -12.52767 -12.36666 -12.31677 -12.27713 -12.03786 -11.90088 -11.69708 -11.14137 -10.99779 -10.84085 -10.54813 -10.43906 -10.02864 -9.61655 -9.42679 -8.10573 -6.28291 0.80866 1.00714 1.13742 1.42623 1.43129 1.46699 1.52762 1.80446 2.34436 2.41065 2.46233 3.11744 3.18398 3.86198 3.88657 3.90212 3.94351 4.04521 4.15999 4.22525 4.26446 4.44567 4.47941 4.50886 4.63262 4.66164 4.68862 4.75126 4.79213 4.85000 4.89276 5.01219 5.13750 5.15091 5.19755 5.26612 5.28219 5.33320 5.36837 5.42355 5.57244 5.57644 5.84759 5.92865 5.95234 6.24091 6.27668 6.32743 6.66440 6.81461 6.89205 7.42241 8.93041 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.003430 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.169579 B = 8160.437987 C = 8989.407086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 N -0.579 5.579 4 C 0.183 3.817 5 C -0.220 4.220 6 C -0.220 4.220 7 C -0.041 4.041 8 O -0.184 6.184 9 C -0.011 4.011 10 C 0.525 3.475 11 O -0.545 6.545 12 C 0.499 3.501 13 O -0.558 6.558 14 N -0.588 5.588 15 C 0.109 3.891 16 C -0.126 4.126 17 C -0.102 4.102 18 C 0.035 3.965 19 H -0.019 1.019 20 C -0.535 4.535 21 H 0.066 0.934 22 C 0.011 3.989 23 N -0.916 5.916 24 Si 0.959 3.041 25 H -0.263 1.263 26 H -0.290 1.290 27 H -0.271 1.271 28 C 0.125 3.875 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.026 0.974 32 H 0.060 0.940 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.228 0.772 38 H 0.239 0.761 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.040 0.960 42 H 0.105 0.895 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.260 0.740 46 H 0.058 0.942 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 -2.432 23.858 24.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.312 5.312 4 C 0.062 3.938 5 C -0.222 4.222 6 C -0.240 4.240 7 C -0.108 4.108 8 O -0.080 6.080 9 C -0.080 4.080 10 C 0.308 3.692 11 O -0.422 6.422 12 C 0.282 3.718 13 O -0.436 6.436 14 N -0.320 5.320 15 C -0.013 4.013 16 C -0.164 4.164 17 C -0.140 4.140 18 C 0.016 3.984 19 H -0.001 1.001 20 C -0.573 4.573 21 H 0.084 0.916 22 C -0.188 4.188 23 N -0.555 5.555 24 Si 0.784 3.216 25 H -0.188 1.188 26 H -0.216 1.216 27 H -0.196 1.196 28 C 0.004 3.996 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.244 0.756 38 H 0.255 0.745 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.059 0.941 42 H 0.124 0.876 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.621 -1.953 23.734 24.468 hybrid contribution -0.688 0.311 -1.780 1.934 sum 4.933 -1.643 21.953 22.561 Atomic orbital electron populations 1.22186 0.94745 1.03633 1.02173 1.21924 0.95492 0.80279 1.04726 1.48140 1.62941 1.15327 1.04779 1.19929 0.93131 0.97534 0.83160 1.20783 0.97280 0.99723 1.04402 1.21904 0.93764 1.03619 1.04708 1.24467 1.00885 0.88360 0.97042 1.84097 1.24500 1.41760 1.57599 1.24511 0.82295 1.00959 1.00186 1.20157 0.77858 0.86181 0.85052 1.90729 1.43924 1.20573 1.86939 1.20674 0.85005 0.79407 0.86715 1.90783 1.25881 1.61578 1.65338 1.48603 1.10197 1.45390 1.27850 1.21925 0.80328 1.03047 0.95999 1.21885 0.99780 0.98957 0.95729 1.21511 0.96788 0.99277 0.96395 1.19013 0.92006 0.94560 0.92804 1.00104 1.21452 0.98308 1.25590 1.11954 0.91586 1.25898 0.95801 0.96809 1.00329 1.70084 1.03616 1.40430 1.41350 0.85593 0.76826 0.79646 0.79497 1.18754 1.21628 1.19625 1.22001 1.03424 0.92206 0.81956 0.89476 0.89932 0.95484 0.92152 0.85240 0.85196 0.90767 0.85105 0.75556 0.74485 0.90477 0.88495 0.94093 0.87622 0.92693 0.91345 0.93082 0.92392 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 10.24 71.98 0.74 -2.61 16 2 C 0.10 1.92 5.98 86.38 0.52 2.44 16 3 N -0.58 -14.41 2.46 -827.73 -2.03 -16.44 16 4 C 0.18 3.47 5.90 85.63 0.51 3.97 16 5 C -0.22 -4.02 5.75 -19.95 -0.11 -4.13 16 6 C -0.22 -4.63 10.87 22.19 0.24 -4.39 16 7 C -0.04 -0.66 12.09 66.97 0.81 0.15 16 8 O -0.18 -2.97 10.65 -2.51 -0.03 -3.00 16 9 C -0.01 -0.14 12.01 66.97 0.80 0.66 16 10 C 0.53 18.89 5.57 87.27 0.49 19.37 16 11 O -0.54 -22.16 16.53 -3.25 -0.05 -22.22 16 12 C 0.50 21.72 5.62 87.27 0.49 22.21 16 13 O -0.56 -29.25 16.19 -3.23 -0.05 -29.30 16 14 N -0.59 -24.28 2.94 -819.65 -2.41 -26.69 16 15 C 0.11 3.46 6.32 86.36 0.55 4.01 16 16 C -0.13 -4.09 6.08 30.67 0.19 -3.90 16 17 C -0.10 -3.96 5.10 30.62 0.16 -3.80 16 18 C 0.04 1.80 2.26 -11.31 -0.03 1.77 16 19 H -0.02 -1.16 8.14 -2.39 -0.02 -1.17 16 20 C -0.53 -29.06 8.56 25.60 0.22 -28.84 16 21 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 22 C 0.01 0.62 5.30 84.65 0.45 1.07 16 23 N -0.92 -55.55 11.41 21.45 0.24 -55.30 16 24 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 26 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 C 0.13 6.13 5.44 86.51 0.47 6.60 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.03 0.78 7.81 -2.39 -0.02 0.76 16 32 H 0.06 1.50 6.78 -2.39 -0.02 1.49 16 33 H 0.13 1.34 8.11 -2.39 -0.02 1.32 16 34 H 0.13 1.38 8.07 -2.38 -0.02 1.36 16 35 H 0.07 1.74 7.50 -2.39 -0.02 1.72 16 36 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 37 H 0.23 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.24 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.08 2.38 6.23 -2.39 -0.01 2.36 16 40 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 46 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.08 4.71 5.14 -2.39 -0.01 4.70 16 Total: -1.00 -79.45 387.27 5.13 -74.32 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.96 Total: 18.37 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.48 Total: 14.57 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -4.20 Total: -98.44 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -0.13 Total: -54.52 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -79.45 5.13 -74.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350202045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.504 kcal (2) G-P(sol) polarization free energy of solvation -79.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds