Wall clock time and date at job start Tue Mar 31 2020 17:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00095 * 2 1 4 4 H 1.08994 * 109.47149 * 29.99908 * 3 2 1 5 5 C 1.53003 * 109.47110 * 270.00324 * 3 2 1 6 6 C 1.53003 * 109.47132 * 150.00451 * 3 2 1 7 7 N 1.46498 * 109.46778 * 299.99688 * 6 3 2 8 8 C 1.34775 * 119.99689 * 179.97438 * 7 6 3 9 9 O 1.21343 * 120.00459 * 0.02562 * 8 7 6 10 10 C 1.49453 * 119.99799 * 180.02562 * 8 7 6 11 11 O 1.21353 * 120.00208 * 0.02562 * 10 8 7 12 12 N 1.34777 * 119.99937 * 179.72511 * 10 8 7 13 13 C 1.46504 * 119.99858 * 180.27545 * 12 10 8 14 14 H 1.08993 * 109.47109 * 35.00633 * 13 12 10 15 15 C 1.53005 * 109.46900 * 155.00136 * 13 12 10 16 16 C 1.50698 * 109.47132 * 295.00372 * 15 13 12 17 17 H 1.07994 * 120.00042 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99710 * 179.97438 * 16 15 13 19 19 N 1.31519 * 120.00118 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99874 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46770 * 60.00570 * 20 18 16 22 22 H 1.48501 * 109.46951 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47297 * 300.00586 * 20 18 16 24 24 C 1.50698 * 109.47229 * 275.00415 * 13 12 10 25 25 C 1.38240 * 119.99920 * 319.72399 * 24 13 12 26 26 C 1.38236 * 119.99667 * 179.81338 * 25 24 13 27 27 C 1.38234 * 120.00356 * 0.39628 * 26 25 24 28 28 C 1.38236 * 119.99897 * 359.86169 * 27 26 25 29 29 C 1.38228 * 119.99910 * 140.00353 * 24 13 12 30 30 H 1.08995 * 109.47065 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46813 * 300.00043 * 1 2 3 32 32 H 1.08996 * 109.47220 * 60.00036 * 1 2 3 33 33 H 1.09008 * 109.47259 * 299.99910 * 5 3 2 34 34 H 1.09001 * 109.47249 * 60.00056 * 5 3 2 35 35 H 1.09004 * 109.47038 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.46943 * 180.02562 * 6 3 2 37 37 H 1.08994 * 109.47116 * 60.00019 * 6 3 2 38 38 H 0.97000 * 120.00381 * 0.02562 * 7 6 3 39 39 H 0.97000 * 120.00317 * 0.28450 * 12 10 8 40 40 H 1.09006 * 109.47065 * 55.00151 * 15 13 12 41 41 H 1.08995 * 109.47063 * 174.99617 * 15 13 12 42 42 H 0.96998 * 119.99906 * 179.97438 * 19 18 16 43 43 H 1.08003 * 119.99866 * 0.02562 * 25 24 13 44 44 H 1.08004 * 119.99630 * 180.23766 * 26 25 24 45 45 H 1.08000 * 120.00325 * 179.83433 * 27 26 25 46 46 H 1.07995 * 120.00432 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.00543 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3590 1.2632 0.7212 7 7 3.1603 0.8171 2.1024 8 6 4.2163 0.7029 2.9320 9 8 5.3315 0.9700 2.5351 10 6 4.0138 0.2473 4.3409 11 8 2.8986 -0.0203 4.7378 12 7 5.0704 0.1277 5.1690 13 6 4.8726 -0.3247 6.5483 14 1 4.0683 -1.0597 6.5778 15 6 6.1640 -0.9610 7.0664 16 6 6.4613 -2.2092 6.2761 17 1 5.7960 -2.5176 5.4833 18 6 7.5833 -2.9568 6.5646 19 7 8.3937 -2.5810 7.5298 20 14 7.9514 -4.5045 5.5854 21 1 8.1116 -4.1560 4.1507 22 1 9.2049 -5.1219 6.0883 23 1 6.8302 -5.4660 5.7390 24 6 4.5093 0.8526 7.4159 25 6 5.1454 2.0666 7.2354 26 6 4.8094 3.1477 8.0288 27 6 3.8432 3.0126 9.0081 28 6 3.2109 1.7971 9.1921 29 6 3.5441 0.7171 8.3961 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.8829 1.0774 -1.9565 34 1 1.2567 1.8015 -1.9563 35 1 2.6614 2.7670 -1.4425 36 1 3.8021 2.2590 0.7215 37 1 4.0241 0.5693 0.2073 38 1 2.2690 0.6032 2.4196 39 1 5.9619 0.3413 4.8518 40 1 6.9872 -0.2553 6.9543 41 1 6.0459 -1.2170 8.1193 42 1 9.1828 -3.1072 7.7329 43 1 5.9025 2.1714 6.4723 44 1 5.3037 4.0972 7.8852 45 1 3.5826 3.8564 9.6297 46 1 2.4563 1.6914 9.9574 47 1 3.0500 -0.2324 8.5399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350831515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:53 Heat of formation + Delta-G solvation = -101.058596 kcal Electronic energy + Delta-G solvation = -28647.413695 eV Core-core repulsion = 24602.003642 eV Total energy + Delta-G solvation = -4045.410053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41062 -39.23870 -38.62565 -37.82624 -35.52684 -34.75198 -32.73258 -31.98830 -31.14066 -30.48088 -28.85820 -27.44365 -26.71656 -25.19060 -23.42281 -22.31516 -21.96050 -21.76994 -20.26432 -19.74129 -18.27726 -17.23275 -16.90517 -16.60003 -16.15142 -15.88659 -15.54740 -15.49729 -15.13265 -14.80821 -14.60635 -14.46237 -14.00642 -13.86796 -13.40243 -13.22320 -13.03857 -12.93874 -12.79954 -12.57296 -12.51892 -12.44699 -12.10771 -11.76256 -11.61234 -11.33149 -11.13039 -11.12431 -10.94976 -10.71745 -10.63278 -10.45158 -10.05402 -9.80192 -9.36850 -9.22647 -9.21684 -8.62463 -8.53058 -8.43314 -8.22550 -6.07098 -4.10934 1.72185 1.77431 1.78780 2.65599 3.33009 3.35556 3.36930 3.40736 3.59421 3.95717 4.22126 4.38805 4.42761 4.63877 4.74534 4.90163 4.98673 5.07045 5.22432 5.23717 5.25340 5.29962 5.31743 5.34494 5.36269 5.44011 5.50950 5.59526 5.76995 5.87746 5.90417 6.09337 6.22846 6.31097 6.39190 6.52065 6.72058 6.81563 6.81873 6.82831 7.04138 7.19054 7.37172 7.48059 7.55695 7.81334 7.88603 8.08851 8.25170 8.46648 8.93946 9.54441 11.03346 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007838 B = 0.003706 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.643894 B = 7553.439368 C =10085.088424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.380 6.380 3 C 0.072 3.928 4 H 0.069 0.931 5 C -0.172 4.172 6 C 0.121 3.879 7 N -0.701 5.701 8 C 0.508 3.492 9 O -0.519 6.519 10 C 0.504 3.496 11 O -0.533 6.533 12 N -0.665 5.665 13 C 0.182 3.818 14 H 0.092 0.908 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.074 4.074 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.123 4.123 29 C -0.106 4.106 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.413 0.587 39 H 0.414 0.586 40 H 0.027 0.973 41 H 0.038 0.962 42 H 0.263 0.737 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.192 12.011 -10.315 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C 0.014 3.986 4 H 0.087 0.913 5 C -0.230 4.230 6 C -0.003 4.003 7 N -0.355 5.355 8 C 0.289 3.711 9 O -0.394 6.394 10 C 0.283 3.717 11 O -0.411 6.411 12 N -0.315 5.315 13 C 0.079 3.921 14 H 0.110 0.890 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.720 3.280 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.076 4.076 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.151 4.151 28 C -0.141 4.141 29 C -0.125 4.125 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.249 0.751 39 H 0.250 0.750 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.866 11.781 -10.219 20.869 hybrid contribution 0.103 -0.662 -0.534 0.857 sum -13.763 11.119 -10.753 20.705 Atomic orbital electron populations 1.22831 0.80817 1.03118 0.99957 1.88005 1.19846 1.26972 1.95045 1.22399 0.94393 0.85544 0.96261 0.91273 1.22205 1.02885 1.02110 0.95777 1.21590 0.96298 1.01333 0.81041 1.45588 1.11045 1.67459 1.11458 1.20418 0.84843 0.78630 0.87171 1.90756 1.23476 1.48103 1.77091 1.19918 0.85781 0.79881 0.86090 1.90710 1.23679 1.49848 1.76857 1.45849 1.10033 1.63598 1.12017 1.20428 1.02636 0.91652 0.77425 0.89027 1.19412 0.88999 0.95552 0.97366 1.21082 1.08659 1.08485 1.17976 0.92434 1.24968 0.96063 0.97815 0.95127 1.69946 1.13912 1.39289 1.29850 0.86646 0.77604 0.83277 0.80471 1.20117 1.21261 1.20189 1.20482 0.95003 0.95508 0.96563 1.20967 0.99447 0.92655 0.99531 1.21052 0.98231 0.98484 0.96459 1.21013 0.97808 0.97448 0.98870 1.21046 1.00191 0.93270 0.99606 1.21012 0.97100 0.98794 0.95581 0.89381 0.93745 0.94094 0.91192 0.91902 0.91090 0.89654 0.90086 0.75095 0.74969 0.95474 0.94382 0.92769 0.86390 0.86634 0.86777 0.86527 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.83 10.09 -35.23 -0.36 -4.19 16 3 C 0.07 0.60 2.81 -26.73 -0.08 0.52 16 4 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 5 C -0.17 -1.11 9.53 37.16 0.35 -0.75 16 6 C 0.12 1.28 5.37 -4.04 -0.02 1.25 16 7 N -0.70 -9.24 5.44 -60.73 -0.33 -9.57 16 8 C 0.51 8.44 7.89 -11.58 -0.09 8.35 16 9 O -0.52 -9.58 16.48 5.50 0.09 -9.49 16 10 C 0.50 9.30 7.85 -11.58 -0.09 9.21 16 11 O -0.53 -10.53 16.14 5.49 0.09 -10.44 16 12 N -0.66 -12.79 4.03 -55.36 -0.22 -13.01 16 13 C 0.18 3.73 2.11 -69.08 -0.15 3.58 16 14 H 0.09 1.99 7.44 -51.93 -0.39 1.60 16 15 C 0.02 0.58 4.49 -27.88 -0.13 0.45 16 16 C -0.52 -14.11 8.84 -34.44 -0.30 -14.42 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 20 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.07 -1.37 4.91 -104.63 -0.51 -1.89 16 25 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 26 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 27 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 28 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 29 C -0.11 -1.80 9.67 -39.58 -0.38 -2.18 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.04 0.23 7.87 -51.93 -0.41 -0.18 16 33 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.41 5.14 7.82 -40.82 -0.32 4.82 16 39 H 0.41 7.93 8.07 -40.82 -0.33 7.60 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.12 1.95 7.73 -52.48 -0.41 1.54 16 44 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 45 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 46 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.12 1.94 8.04 -52.49 -0.42 1.52 16 LS Contribution 403.46 15.07 6.08 6.08 Total: -1.00 -32.17 403.46 -8.17 -40.34 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -7.27 Total: 10.73 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.96 Total: -1.83 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.18 Total: -47.71 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.18 Total: -24.12 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.17 -8.17 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350831515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.719 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds