Wall clock time and date at job start Tue Mar 31 2020 17:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00095 * 2 1 4 4 H 1.08994 * 109.47149 * 29.99908 * 3 2 1 5 5 C 1.53003 * 109.47110 * 270.00324 * 3 2 1 6 6 C 1.53003 * 109.47132 * 150.00451 * 3 2 1 7 7 N 1.46498 * 109.46778 * 299.99688 * 6 3 2 8 8 C 1.34775 * 119.99689 * 179.97438 * 7 6 3 9 9 O 1.21343 * 120.00459 * 0.02562 * 8 7 6 10 10 C 1.49453 * 119.99799 * 180.02562 * 8 7 6 11 11 O 1.21353 * 120.00208 * 0.02562 * 10 8 7 12 12 N 1.34777 * 119.99937 * 179.72511 * 10 8 7 13 13 C 1.46504 * 119.99858 * 180.27545 * 12 10 8 14 14 H 1.08993 * 109.47109 * 35.00633 * 13 12 10 15 15 C 1.53005 * 109.46900 * 155.00136 * 13 12 10 16 16 C 1.50698 * 109.47132 * 295.00372 * 15 13 12 17 17 H 1.07994 * 120.00042 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99710 * 179.97438 * 16 15 13 19 19 N 1.31519 * 120.00118 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99874 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46770 * 60.00570 * 20 18 16 22 22 H 1.48501 * 109.46951 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47297 * 300.00586 * 20 18 16 24 24 C 1.50698 * 109.47229 * 275.00415 * 13 12 10 25 25 C 1.38240 * 119.99920 * 319.72399 * 24 13 12 26 26 C 1.38236 * 119.99667 * 179.81338 * 25 24 13 27 27 C 1.38234 * 120.00356 * 0.39628 * 26 25 24 28 28 C 1.38236 * 119.99897 * 359.86169 * 27 26 25 29 29 C 1.38228 * 119.99910 * 140.00353 * 24 13 12 30 30 H 1.08995 * 109.47065 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46813 * 300.00043 * 1 2 3 32 32 H 1.08996 * 109.47220 * 60.00036 * 1 2 3 33 33 H 1.09008 * 109.47259 * 299.99910 * 5 3 2 34 34 H 1.09001 * 109.47249 * 60.00056 * 5 3 2 35 35 H 1.09004 * 109.47038 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.46943 * 180.02562 * 6 3 2 37 37 H 1.08994 * 109.47116 * 60.00019 * 6 3 2 38 38 H 0.97000 * 120.00381 * 0.02562 * 7 6 3 39 39 H 0.97000 * 120.00317 * 0.28450 * 12 10 8 40 40 H 1.09006 * 109.47065 * 55.00151 * 15 13 12 41 41 H 1.08995 * 109.47063 * 174.99617 * 15 13 12 42 42 H 0.96998 * 119.99906 * 179.97438 * 19 18 16 43 43 H 1.08003 * 119.99866 * 0.02562 * 25 24 13 44 44 H 1.08004 * 119.99630 * 180.23766 * 26 25 24 45 45 H 1.08000 * 120.00325 * 179.83433 * 27 26 25 46 46 H 1.07995 * 120.00432 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.00543 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3590 1.2632 0.7212 7 7 3.1603 0.8171 2.1024 8 6 4.2163 0.7029 2.9320 9 8 5.3315 0.9700 2.5351 10 6 4.0138 0.2473 4.3409 11 8 2.8986 -0.0203 4.7378 12 7 5.0704 0.1277 5.1690 13 6 4.8726 -0.3247 6.5483 14 1 4.0683 -1.0597 6.5778 15 6 6.1640 -0.9610 7.0664 16 6 6.4613 -2.2092 6.2761 17 1 5.7960 -2.5176 5.4833 18 6 7.5833 -2.9568 6.5646 19 7 8.3937 -2.5810 7.5298 20 14 7.9514 -4.5045 5.5854 21 1 8.1116 -4.1560 4.1507 22 1 9.2049 -5.1219 6.0883 23 1 6.8302 -5.4660 5.7390 24 6 4.5093 0.8526 7.4159 25 6 5.1454 2.0666 7.2354 26 6 4.8094 3.1477 8.0288 27 6 3.8432 3.0126 9.0081 28 6 3.2109 1.7971 9.1921 29 6 3.5441 0.7171 8.3961 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.8829 1.0774 -1.9565 34 1 1.2567 1.8015 -1.9563 35 1 2.6614 2.7670 -1.4425 36 1 3.8021 2.2590 0.7215 37 1 4.0241 0.5693 0.2073 38 1 2.2690 0.6032 2.4196 39 1 5.9619 0.3413 4.8518 40 1 6.9872 -0.2553 6.9543 41 1 6.0459 -1.2170 8.1193 42 1 9.1828 -3.1072 7.7329 43 1 5.9025 2.1714 6.4723 44 1 5.3037 4.0972 7.8852 45 1 3.5826 3.8564 9.6297 46 1 2.4563 1.6914 9.9574 47 1 3.0500 -0.2324 8.5399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350831515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:52 Heat of formation + Delta-G solvation = -122.703904 kcal Electronic energy + Delta-G solvation = -28648.352306 eV Core-core repulsion = 24602.003642 eV Total energy + Delta-G solvation = -4046.348664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80160 -40.46997 -39.57244 -39.06975 -37.05039 -35.91542 -34.73864 -32.76588 -32.60248 -31.70324 -30.58704 -28.32297 -27.48557 -26.81073 -24.78839 -23.81798 -23.32100 -22.53675 -21.64666 -21.18582 -19.62917 -18.64541 -18.04848 -17.92612 -17.62623 -17.00822 -16.87334 -16.70074 -16.41509 -16.08303 -16.00210 -15.58759 -15.22723 -15.07989 -14.76420 -14.48492 -14.19743 -14.16137 -13.96499 -13.70442 -13.60286 -13.49705 -13.33855 -13.10496 -12.96154 -12.78134 -12.65219 -12.45208 -12.34086 -12.17774 -11.88927 -11.75777 -11.63708 -11.38800 -10.82329 -10.63117 -10.54658 -10.36052 -10.17809 -9.76420 -9.55069 -8.22078 -6.32357 0.35390 0.48420 0.55315 1.35792 1.39109 1.40443 1.48326 2.16209 2.38776 2.63229 2.76449 2.97418 3.12393 3.47520 3.69464 3.93336 4.00654 4.01456 4.16031 4.20589 4.32278 4.37817 4.47693 4.49262 4.56288 4.60882 4.66233 4.72650 4.76887 4.79732 4.90888 4.94394 5.06377 5.09281 5.13613 5.19859 5.30152 5.38845 5.51575 5.60515 5.63963 5.74816 5.77092 5.97900 6.13349 6.18309 6.21842 6.39108 6.73053 6.79454 6.96902 7.36489 8.88448 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007838 B = 0.003706 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.643894 B = 7553.439368 C =10085.088424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.075 3.925 4 H 0.087 0.913 5 C -0.167 4.167 6 C 0.116 3.884 7 N -0.684 5.684 8 C 0.511 3.489 9 O -0.542 6.542 10 C 0.502 3.498 11 O -0.548 6.548 12 N -0.667 5.667 13 C 0.198 3.802 14 H 0.073 0.927 15 C 0.037 3.963 16 C -0.535 4.535 17 H 0.053 0.947 18 C 0.013 3.987 19 N -0.924 5.924 20 Si 0.954 3.046 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.271 1.271 24 C -0.100 4.100 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.121 4.121 29 C -0.126 4.126 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.418 0.582 39 H 0.412 0.588 40 H 0.010 0.990 41 H 0.013 0.987 42 H 0.265 0.735 43 H 0.113 0.887 44 H 0.144 0.856 45 H 0.153 0.847 46 H 0.148 0.852 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.695 13.576 -10.943 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.017 3.983 4 H 0.105 0.895 5 C -0.225 4.225 6 C -0.007 4.007 7 N -0.337 5.337 8 C 0.292 3.708 9 O -0.419 6.419 10 C 0.283 3.717 11 O -0.427 6.427 12 N -0.317 5.317 13 C 0.094 3.906 14 H 0.091 0.909 15 C 0.000 4.000 16 C -0.573 4.573 17 H 0.071 0.929 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.779 3.221 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.196 1.196 24 C -0.102 4.102 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.139 4.139 29 C -0.145 4.145 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.255 0.745 39 H 0.249 0.751 40 H 0.028 0.972 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.131 0.869 44 H 0.162 0.838 45 H 0.170 0.830 46 H 0.166 0.834 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.412 13.351 -10.873 23.108 hybrid contribution 0.493 -1.091 -0.315 1.238 sum -14.918 12.260 -11.188 22.316 Atomic orbital electron populations 1.22978 0.79458 1.03668 1.01109 1.87964 1.21464 1.28096 1.95269 1.22456 0.93159 0.85401 0.97248 0.89548 1.22182 1.03482 1.02558 0.94303 1.21865 0.98000 1.01551 0.79268 1.45612 1.10291 1.65698 1.12077 1.20026 0.85314 0.78967 0.86518 1.90747 1.24336 1.49661 1.77190 1.20276 0.85207 0.79325 0.86889 1.90688 1.24078 1.50516 1.77388 1.45782 1.10328 1.63738 1.11821 1.19967 0.99649 0.92472 0.78561 0.90889 1.19146 0.90503 0.94604 0.95752 1.21382 1.08561 1.09441 1.17916 0.92917 1.25756 0.95978 1.00823 0.96077 1.70053 1.14420 1.40618 1.31258 0.85670 0.77663 0.79705 0.79051 1.19747 1.20531 1.19576 1.20339 0.97007 0.95278 0.97530 1.21068 0.99725 0.93085 1.00418 1.21415 0.98266 0.98758 0.95813 1.21489 0.96351 0.98230 0.98255 1.21420 1.00431 0.92670 0.99364 1.21188 0.97322 0.99934 0.96056 0.89272 0.93094 0.92398 0.92103 0.90724 0.89605 0.88235 0.91296 0.74546 0.75133 0.97183 0.96846 0.92624 0.86899 0.83805 0.82950 0.83448 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.41 -7.72 10.09 -148.98 -1.50 -9.22 16 3 C 0.08 1.11 2.81 30.60 0.09 1.19 16 4 H 0.09 0.98 7.79 -2.39 -0.02 0.96 16 5 C -0.17 -1.80 9.53 71.98 0.69 -1.11 16 6 C 0.12 2.32 5.37 86.38 0.46 2.78 16 7 N -0.68 -17.63 5.44 -464.42 -2.53 -20.16 16 8 C 0.51 17.10 7.89 87.27 0.69 17.79 16 9 O -0.54 -20.22 16.48 -3.22 -0.05 -20.27 16 10 C 0.50 19.04 7.85 87.27 0.68 19.72 16 11 O -0.55 -22.07 16.14 -3.26 -0.05 -22.12 16 12 N -0.67 -26.81 4.03 -447.42 -1.81 -28.61 16 13 C 0.20 8.51 2.11 44.25 0.09 8.60 16 14 H 0.07 3.36 7.44 -2.39 -0.02 3.34 16 15 C 0.04 1.91 4.49 29.85 0.13 2.04 16 16 C -0.54 -29.84 8.84 25.60 0.23 -29.62 16 17 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 18 C 0.01 0.72 5.46 84.65 0.46 1.18 16 19 N -0.92 -54.91 13.29 21.45 0.28 -54.63 16 20 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 C -0.10 -3.81 4.91 -19.87 -0.10 -3.91 16 25 C -0.12 -4.27 9.32 22.27 0.21 -4.06 16 26 C -0.12 -3.44 10.05 22.27 0.22 -3.21 16 27 C -0.13 -3.10 10.05 22.27 0.22 -2.87 16 28 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 29 C -0.13 -4.30 9.67 22.27 0.22 -4.09 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.06 0.53 7.87 -2.39 -0.02 0.51 16 33 H 0.06 0.77 8.14 -2.38 -0.02 0.76 16 34 H 0.07 0.65 7.87 -2.39 -0.02 0.63 16 35 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.42 10.09 7.82 -92.71 -0.72 9.36 16 39 H 0.41 16.66 8.07 -92.71 -0.75 15.91 16 40 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.11 3.85 7.73 -2.91 -0.02 3.83 16 44 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 45 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 46 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 47 H 0.12 3.96 8.04 -2.91 -0.02 3.93 16 Total: -1.00 -70.79 403.46 1.63 -69.17 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -0.49 Total: 36.17 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 5.75 Total: 2.90 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -4.05 Total: -103.40 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -1.61 Total: -51.61 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -70.79 1.63 -69.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350831515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.536 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds