Wall clock time and date at job start Tue Mar 31 2020 17:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99625 * 2 1 4 4 H 1.09006 * 109.47534 * 29.99554 * 3 2 1 5 5 C 1.52997 * 109.47326 * 269.99548 * 3 2 1 6 6 C 1.53004 * 109.46914 * 149.99699 * 3 2 1 7 7 N 1.46499 * 109.47198 * 299.99866 * 6 3 2 8 8 C 1.34777 * 119.99665 * 180.27868 * 7 6 3 9 9 O 1.21343 * 120.00424 * 359.72011 * 8 7 6 10 10 C 1.49452 * 119.99622 * 179.72283 * 8 7 6 11 11 O 1.21343 * 119.99955 * 0.02562 * 10 8 7 12 12 N 1.34777 * 119.99621 * 179.97438 * 10 8 7 13 13 C 1.46505 * 119.99724 * 180.02562 * 12 10 8 14 14 H 1.09002 * 109.47222 * 325.00478 * 13 12 10 15 15 C 1.52998 * 109.47085 * 205.00369 * 13 12 10 16 16 C 1.50700 * 109.47464 * 64.99926 * 15 13 12 17 17 H 1.08005 * 119.99395 * 359.97438 * 16 15 13 18 18 C 1.37870 * 120.00277 * 180.02562 * 16 15 13 19 19 N 1.31518 * 120.00169 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00085 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47150 * 59.99998 * 20 18 16 22 22 H 1.48502 * 109.46974 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46975 * 299.99749 * 20 18 16 24 24 C 1.50695 * 109.47124 * 85.00315 * 13 12 10 25 25 C 1.38237 * 120.00181 * 39.72199 * 24 13 12 26 26 C 1.38238 * 120.00141 * 179.78761 * 25 24 13 27 27 C 1.38232 * 119.99878 * 0.44695 * 26 25 24 28 28 C 1.38244 * 119.99917 * 359.80853 * 27 26 25 29 29 C 1.38226 * 120.00086 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47639 * 299.99893 * 1 2 3 32 32 H 1.09004 * 109.47080 * 60.00437 * 1 2 3 33 33 H 1.08995 * 109.47672 * 179.97438 * 5 3 2 34 34 H 1.09007 * 109.47288 * 300.00694 * 5 3 2 35 35 H 1.09004 * 109.46774 * 59.99898 * 5 3 2 36 36 H 1.09009 * 109.46730 * 179.97438 * 6 3 2 37 37 H 1.08998 * 109.46846 * 60.00198 * 6 3 2 38 38 H 0.97001 * 119.99790 * 359.97438 * 7 6 3 39 39 H 0.97000 * 120.00483 * 0.02562 * 12 10 8 40 40 H 1.09000 * 109.47070 * 184.99947 * 15 13 12 41 41 H 1.09006 * 109.46982 * 304.99751 * 15 13 12 42 42 H 0.96998 * 120.00413 * 179.97438 * 19 18 16 43 43 H 1.07999 * 119.99969 * 0.02562 * 25 24 13 44 44 H 1.08000 * 119.99930 * 180.27755 * 26 25 24 45 45 H 1.07995 * 120.00167 * 179.83553 * 27 26 25 46 46 H 1.08001 * 119.99671 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.00308 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3588 1.2633 0.7213 7 7 3.1602 0.8172 2.1025 8 6 4.2153 0.7090 2.9341 9 8 5.3305 0.9761 2.5372 10 6 4.0118 0.2599 4.3449 11 8 2.8967 -0.0078 4.7416 12 7 5.0671 0.1511 5.1763 13 6 4.8677 -0.2897 6.5591 14 1 3.9165 0.0933 6.9290 15 6 6.0058 0.2416 7.4328 16 6 5.9418 1.7464 7.4810 17 1 5.1671 2.2714 6.9418 18 6 6.8728 2.4530 8.2123 19 7 7.8171 1.8137 8.8675 20 14 6.7931 4.3183 8.2725 21 1 5.4904 4.7398 8.8474 22 1 7.8986 4.8340 9.1194 23 1 6.9274 4.8641 6.8979 24 6 4.8566 -1.7957 6.6096 25 6 5.7393 -2.5200 5.8304 26 6 5.7321 -3.9015 5.8800 27 6 4.8360 -4.5589 6.7019 28 6 3.9496 -3.8347 7.4772 29 6 3.9599 -2.4532 7.4309 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 2.6605 2.7673 -1.4425 34 1 2.8830 1.0774 -1.9563 35 1 1.2568 1.8013 -1.9563 36 1 3.8023 2.2591 0.7209 37 1 4.0241 0.5694 0.2075 38 1 2.2687 0.6040 2.4199 39 1 5.9585 0.3647 4.8591 40 1 5.9065 -0.1588 8.4418 41 1 6.9622 -0.0682 7.0115 42 1 8.4724 2.3108 9.3817 43 1 6.4372 -2.0064 5.1857 44 1 6.4249 -4.4672 5.2746 45 1 4.8285 -5.6382 6.7387 46 1 3.2492 -4.3484 8.1190 47 1 3.2677 -1.8875 8.0369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350831516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:56 Heat of formation + Delta-G solvation = -101.194361 kcal Electronic energy + Delta-G solvation = -28662.000469 eV Core-core repulsion = 24616.584529 eV Total energy + Delta-G solvation = -4045.415940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41127 -39.23374 -38.62611 -37.82515 -35.52616 -34.75332 -32.74166 -31.99093 -31.13241 -30.46441 -28.85832 -27.44842 -26.72465 -25.19244 -23.42412 -22.30165 -21.95515 -21.77215 -20.26170 -19.73756 -18.27814 -17.24402 -16.89465 -16.59719 -16.15118 -15.88951 -15.61231 -15.43011 -15.15850 -14.79485 -14.61193 -14.45456 -14.01145 -13.86724 -13.42586 -13.18333 -13.03286 -12.94837 -12.79668 -12.57704 -12.51609 -12.44476 -12.10808 -11.77120 -11.61605 -11.33252 -11.13677 -11.12709 -10.94811 -10.71477 -10.63977 -10.45496 -10.06531 -9.80722 -9.37449 -9.22936 -9.21759 -8.62192 -8.51656 -8.44352 -8.21155 -6.08062 -4.11990 1.73540 1.78475 1.79826 2.65825 3.31064 3.34332 3.35433 3.38435 3.59365 3.95967 4.23438 4.38641 4.41274 4.64186 4.74627 4.90194 4.97927 5.06181 5.23034 5.25288 5.26963 5.28917 5.31917 5.35288 5.36225 5.43118 5.52265 5.58655 5.76479 5.89252 5.91777 6.09881 6.22746 6.32278 6.40489 6.52402 6.72121 6.80014 6.83455 6.84680 7.05172 7.19088 7.38840 7.47658 7.55584 7.81334 7.87454 8.08814 8.24286 8.46636 8.92746 9.53221 11.02412 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008170 B = 0.003675 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3426.190956 B = 7616.217221 C =10221.359828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.381 6.381 3 C 0.072 3.928 4 H 0.070 0.930 5 C -0.172 4.172 6 C 0.121 3.879 7 N -0.701 5.701 8 C 0.508 3.492 9 O -0.519 6.519 10 C 0.504 3.496 11 O -0.533 6.533 12 N -0.665 5.665 13 C 0.182 3.818 14 H 0.092 0.908 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.075 4.075 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.123 4.123 29 C -0.106 4.106 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.413 0.587 39 H 0.414 0.586 40 H 0.038 0.962 41 H 0.027 0.973 42 H 0.263 0.737 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.861 -5.724 -15.712 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C 0.014 3.986 4 H 0.088 0.912 5 C -0.230 4.230 6 C -0.002 4.002 7 N -0.355 5.355 8 C 0.289 3.711 9 O -0.394 6.394 10 C 0.283 3.717 11 O -0.411 6.411 12 N -0.315 5.315 13 C 0.079 3.921 14 H 0.110 0.890 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.076 4.076 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.151 4.151 28 C -0.141 4.141 29 C -0.125 4.125 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.249 0.751 39 H 0.250 0.750 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.550 -5.847 -15.584 20.259 hybrid contribution -0.152 1.271 0.050 1.281 sum -11.701 -4.576 -15.534 19.979 Atomic orbital electron populations 1.22833 0.80815 1.03063 1.00031 1.87989 1.19853 1.27052 1.95062 1.22406 0.94427 0.85508 0.96283 0.91203 1.22201 1.02875 1.02144 0.95740 1.21589 0.96244 1.01414 0.80995 1.45586 1.11093 1.67496 1.11375 1.20421 0.84881 0.78624 0.87141 1.90756 1.23542 1.47985 1.77145 1.19913 0.85784 0.79737 0.86230 1.90707 1.23622 1.49875 1.76883 1.45852 1.10278 1.63694 1.11688 1.20423 1.03506 0.87647 0.80535 0.89046 1.19412 0.91325 0.96170 0.94442 1.21078 1.13413 0.91057 1.30645 0.92464 1.24970 0.95254 0.98533 0.95245 1.69944 1.15819 1.35718 1.31479 0.86643 0.77615 0.85592 0.78117 1.20211 1.21255 1.20159 1.20477 0.94822 0.96545 0.95745 1.20964 0.98567 0.93794 0.99264 1.21054 0.99136 0.94484 0.99504 1.21015 0.96909 0.99263 0.97928 1.21040 0.99303 0.94101 0.99666 1.21001 0.98383 0.94232 0.98883 0.89426 0.93702 0.94075 0.91037 0.91233 0.91908 0.89576 0.90168 0.75091 0.74967 0.94374 0.95460 0.92757 0.86406 0.86619 0.86770 0.86531 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.71 10.09 -35.23 -0.36 -4.07 16 3 C 0.07 0.59 2.81 -26.73 -0.08 0.52 16 4 H 0.07 0.50 7.79 -51.93 -0.40 0.10 16 5 C -0.17 -1.11 9.53 37.16 0.35 -0.75 16 6 C 0.12 1.28 5.37 -4.04 -0.02 1.26 16 7 N -0.70 -9.24 5.44 -60.73 -0.33 -9.57 16 8 C 0.51 8.43 7.89 -11.58 -0.09 8.34 16 9 O -0.52 -9.58 16.48 5.50 0.09 -9.48 16 10 C 0.50 9.30 7.85 -11.58 -0.09 9.21 16 11 O -0.53 -10.53 16.14 5.50 0.09 -10.44 16 12 N -0.66 -12.79 4.01 -55.36 -0.22 -13.02 16 13 C 0.18 3.73 2.12 -69.08 -0.15 3.59 16 14 H 0.09 1.97 7.44 -51.93 -0.39 1.59 16 15 C 0.02 0.57 4.50 -27.88 -0.13 0.45 16 16 C -0.52 -14.02 8.84 -34.44 -0.30 -14.32 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 20 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.07 -1.39 4.91 -104.62 -0.51 -1.90 16 25 C -0.11 -1.86 9.33 -39.58 -0.37 -2.23 16 26 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 27 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 28 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 29 C -0.11 -1.82 9.67 -39.58 -0.38 -2.20 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.04 0.23 7.87 -51.93 -0.41 -0.18 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.35 7.87 -51.93 -0.41 -0.05 16 36 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.41 5.14 7.82 -40.82 -0.32 4.82 16 39 H 0.41 7.94 8.07 -40.82 -0.33 7.61 16 40 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.12 1.98 7.71 -52.49 -0.40 1.57 16 44 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 45 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 46 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 47 H 0.12 1.95 8.04 -52.49 -0.42 1.53 16 LS Contribution 403.43 15.07 6.08 6.08 Total: -1.00 -31.98 403.43 -8.17 -40.15 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -7.27 Total: 10.99 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.96 Total: -1.91 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.18 Total: -47.61 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.18 Total: -24.00 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.98 -8.17 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350831516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.047 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds