Wall clock time and date at job start Tue Mar 31 2020 17:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99625 * 2 1 4 4 H 1.09006 * 109.47534 * 29.99554 * 3 2 1 5 5 C 1.52997 * 109.47326 * 269.99548 * 3 2 1 6 6 C 1.53004 * 109.46914 * 149.99699 * 3 2 1 7 7 N 1.46499 * 109.47198 * 299.99866 * 6 3 2 8 8 C 1.34777 * 119.99665 * 180.27868 * 7 6 3 9 9 O 1.21343 * 120.00424 * 359.72011 * 8 7 6 10 10 C 1.49452 * 119.99622 * 179.72283 * 8 7 6 11 11 O 1.21343 * 119.99955 * 0.02562 * 10 8 7 12 12 N 1.34777 * 119.99621 * 179.97438 * 10 8 7 13 13 C 1.46505 * 119.99724 * 180.02562 * 12 10 8 14 14 H 1.09002 * 109.47222 * 325.00478 * 13 12 10 15 15 C 1.52998 * 109.47085 * 205.00369 * 13 12 10 16 16 C 1.50700 * 109.47464 * 64.99926 * 15 13 12 17 17 H 1.08005 * 119.99395 * 359.97438 * 16 15 13 18 18 C 1.37870 * 120.00277 * 180.02562 * 16 15 13 19 19 N 1.31518 * 120.00169 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00085 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47150 * 59.99998 * 20 18 16 22 22 H 1.48502 * 109.46974 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46975 * 299.99749 * 20 18 16 24 24 C 1.50695 * 109.47124 * 85.00315 * 13 12 10 25 25 C 1.38237 * 120.00181 * 39.72199 * 24 13 12 26 26 C 1.38238 * 120.00141 * 179.78761 * 25 24 13 27 27 C 1.38232 * 119.99878 * 0.44695 * 26 25 24 28 28 C 1.38244 * 119.99917 * 359.80853 * 27 26 25 29 29 C 1.38226 * 120.00086 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47639 * 299.99893 * 1 2 3 32 32 H 1.09004 * 109.47080 * 60.00437 * 1 2 3 33 33 H 1.08995 * 109.47672 * 179.97438 * 5 3 2 34 34 H 1.09007 * 109.47288 * 300.00694 * 5 3 2 35 35 H 1.09004 * 109.46774 * 59.99898 * 5 3 2 36 36 H 1.09009 * 109.46730 * 179.97438 * 6 3 2 37 37 H 1.08998 * 109.46846 * 60.00198 * 6 3 2 38 38 H 0.97001 * 119.99790 * 359.97438 * 7 6 3 39 39 H 0.97000 * 120.00483 * 0.02562 * 12 10 8 40 40 H 1.09000 * 109.47070 * 184.99947 * 15 13 12 41 41 H 1.09006 * 109.46982 * 304.99751 * 15 13 12 42 42 H 0.96998 * 120.00413 * 179.97438 * 19 18 16 43 43 H 1.07999 * 119.99969 * 0.02562 * 25 24 13 44 44 H 1.08000 * 119.99930 * 180.27755 * 26 25 24 45 45 H 1.07995 * 120.00167 * 179.83553 * 27 26 25 46 46 H 1.08001 * 119.99671 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.00308 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3588 1.2633 0.7213 7 7 3.1602 0.8172 2.1025 8 6 4.2153 0.7090 2.9341 9 8 5.3305 0.9761 2.5372 10 6 4.0118 0.2599 4.3449 11 8 2.8967 -0.0078 4.7416 12 7 5.0671 0.1511 5.1763 13 6 4.8677 -0.2897 6.5591 14 1 3.9165 0.0933 6.9290 15 6 6.0058 0.2416 7.4328 16 6 5.9418 1.7464 7.4810 17 1 5.1671 2.2714 6.9418 18 6 6.8728 2.4530 8.2123 19 7 7.8171 1.8137 8.8675 20 14 6.7931 4.3183 8.2725 21 1 5.4904 4.7398 8.8474 22 1 7.8986 4.8340 9.1194 23 1 6.9274 4.8641 6.8979 24 6 4.8566 -1.7957 6.6096 25 6 5.7393 -2.5200 5.8304 26 6 5.7321 -3.9015 5.8800 27 6 4.8360 -4.5589 6.7019 28 6 3.9496 -3.8347 7.4772 29 6 3.9599 -2.4532 7.4309 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 2.6605 2.7673 -1.4425 34 1 2.8830 1.0774 -1.9563 35 1 1.2568 1.8013 -1.9563 36 1 3.8023 2.2591 0.7209 37 1 4.0241 0.5694 0.2075 38 1 2.2687 0.6040 2.4199 39 1 5.9585 0.3647 4.8591 40 1 5.9065 -0.1588 8.4418 41 1 6.9622 -0.0682 7.0115 42 1 8.4724 2.3108 9.3817 43 1 6.4372 -2.0064 5.1857 44 1 6.4249 -4.4672 5.2746 45 1 4.8285 -5.6382 6.7387 46 1 3.2492 -4.3484 8.1190 47 1 3.2677 -1.8875 8.0369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350831516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:55 Heat of formation + Delta-G solvation = -122.588508 kcal Electronic energy + Delta-G solvation = -28662.928188 eV Core-core repulsion = 24616.584529 eV Total energy + Delta-G solvation = -4046.343660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80303 -40.47126 -39.57308 -39.06961 -37.05063 -35.91409 -34.73456 -32.76665 -32.60246 -31.70711 -30.58868 -28.32378 -27.48278 -26.80940 -24.78870 -23.81734 -23.32635 -22.53904 -21.64741 -21.18588 -19.62993 -18.64179 -18.04965 -17.92749 -17.61755 -16.98666 -16.93702 -16.66863 -16.40570 -16.09648 -15.99756 -15.58340 -15.18357 -15.13485 -14.77195 -14.45270 -14.20286 -14.18247 -13.95893 -13.70524 -13.60296 -13.49658 -13.34195 -13.10621 -12.95566 -12.77892 -12.64853 -12.44526 -12.33988 -12.17926 -11.89125 -11.76317 -11.63630 -11.38262 -10.82297 -10.62868 -10.54296 -10.36350 -10.17825 -9.76859 -9.55239 -8.21286 -6.31865 0.35398 0.48091 0.54958 1.36123 1.39795 1.41327 1.49113 2.15805 2.39421 2.63059 2.75852 2.97118 3.13141 3.47438 3.69191 3.93268 4.00224 4.01094 4.15887 4.20025 4.31816 4.37824 4.48387 4.49438 4.56324 4.60648 4.65990 4.72341 4.76564 4.79578 4.91101 4.94131 5.06301 5.09130 5.13372 5.19432 5.29820 5.39198 5.51504 5.60129 5.63562 5.75080 5.76851 5.97829 6.13501 6.18138 6.20799 6.39087 6.72972 6.79969 6.96862 7.36999 8.89296 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008170 B = 0.003675 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3426.190956 B = 7616.217221 C =10221.359828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.075 3.925 4 H 0.083 0.917 5 C -0.167 4.167 6 C 0.116 3.884 7 N -0.684 5.684 8 C 0.511 3.489 9 O -0.542 6.542 10 C 0.503 3.497 11 O -0.548 6.548 12 N -0.667 5.667 13 C 0.198 3.802 14 H 0.074 0.926 15 C 0.037 3.963 16 C -0.535 4.535 17 H 0.054 0.946 18 C 0.011 3.989 19 N -0.925 5.925 20 Si 0.956 3.044 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.271 1.271 24 C -0.101 4.101 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.121 4.121 29 C -0.126 4.126 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.418 0.582 39 H 0.412 0.588 40 H 0.013 0.987 41 H 0.009 0.991 42 H 0.265 0.735 43 H 0.112 0.888 44 H 0.143 0.857 45 H 0.153 0.847 46 H 0.148 0.852 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.151 -6.238 -16.992 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.017 3.983 4 H 0.101 0.899 5 C -0.225 4.225 6 C -0.007 4.007 7 N -0.337 5.337 8 C 0.292 3.708 9 O -0.419 6.419 10 C 0.283 3.717 11 O -0.427 6.427 12 N -0.317 5.317 13 C 0.094 3.906 14 H 0.093 0.907 15 C 0.000 4.000 16 C -0.572 4.572 17 H 0.073 0.927 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.781 3.219 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.196 1.196 24 C -0.102 4.102 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.144 4.144 28 C -0.139 4.139 29 C -0.145 4.145 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.255 0.745 39 H 0.249 0.751 40 H 0.031 0.969 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.130 0.870 44 H 0.161 0.839 45 H 0.170 0.830 46 H 0.166 0.834 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.882 -6.361 -16.893 22.176 hybrid contribution 0.191 1.335 0.427 1.414 sum -12.692 -5.026 -16.466 21.389 Atomic orbital electron populations 1.22984 0.79478 1.03745 1.01032 1.87951 1.21413 1.27909 1.95266 1.22438 0.93153 0.85437 0.97233 0.89869 1.22177 1.03522 1.02521 0.94290 1.21855 0.98013 1.01510 0.79286 1.45610 1.10343 1.65737 1.11996 1.20028 0.85350 0.78968 0.86480 1.90747 1.24400 1.49547 1.77239 1.20270 0.85189 0.79155 0.87069 1.90686 1.24010 1.50509 1.77446 1.45785 1.10551 1.63959 1.11386 1.19969 1.00684 0.89407 0.80552 0.90746 1.19146 0.92008 0.95061 0.93809 1.21385 1.13140 0.92439 1.30283 0.92748 1.25783 0.94924 1.03143 0.94929 1.70058 1.16597 1.37468 1.32332 0.85640 0.77867 0.80104 0.78296 1.19498 1.20693 1.19598 1.20357 0.96840 0.95175 0.97816 1.21065 0.98612 0.95168 0.99530 1.21414 0.99661 0.93552 0.99707 1.21489 0.95407 1.01196 0.96274 1.21422 0.99702 0.93058 0.99697 1.21190 0.98514 0.95749 0.99015 0.89028 0.93271 0.92476 0.89840 0.91830 0.90734 0.88688 0.90825 0.74543 0.75134 0.96873 0.97280 0.92650 0.86974 0.83901 0.82975 0.83399 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.51 16 2 O -0.41 -7.34 10.09 -148.98 -1.50 -8.84 16 3 C 0.08 1.11 2.81 30.59 0.09 1.20 16 4 H 0.08 1.01 7.79 -2.38 -0.02 0.99 16 5 C -0.17 -1.80 9.53 71.98 0.69 -1.12 16 6 C 0.12 2.32 5.37 86.38 0.46 2.79 16 7 N -0.68 -17.63 5.44 -464.40 -2.53 -20.15 16 8 C 0.51 17.08 7.89 87.27 0.69 17.77 16 9 O -0.54 -20.20 16.48 -3.23 -0.05 -20.26 16 10 C 0.50 19.02 7.85 87.27 0.68 19.70 16 11 O -0.55 -22.02 16.14 -3.22 -0.05 -22.07 16 12 N -0.67 -26.79 4.01 -447.43 -1.80 -28.58 16 13 C 0.20 8.51 2.12 44.24 0.09 8.61 16 14 H 0.07 3.40 7.44 -2.39 -0.02 3.38 16 15 C 0.04 1.89 4.50 29.85 0.13 2.03 16 16 C -0.53 -29.53 8.84 25.60 0.23 -29.31 16 17 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 18 C 0.01 0.63 5.46 84.65 0.46 1.09 16 19 N -0.92 -54.79 13.29 21.45 0.28 -54.50 16 20 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 24 C -0.10 -3.86 4.91 -19.87 -0.10 -3.96 16 25 C -0.13 -4.39 9.33 22.27 0.21 -4.18 16 26 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 27 C -0.13 -3.20 10.05 22.27 0.22 -2.97 16 28 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 29 C -0.13 -4.33 9.67 22.27 0.22 -4.12 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.06 0.50 7.87 -2.39 -0.02 0.49 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.07 0.65 7.87 -2.38 -0.02 0.63 16 36 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.42 10.09 7.82 -92.71 -0.72 9.36 16 39 H 0.41 16.66 8.07 -92.71 -0.75 15.91 16 40 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.11 3.92 7.71 -2.91 -0.02 3.90 16 44 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 45 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 46 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 47 H 0.12 4.00 8.04 -2.91 -0.02 3.98 16 Total: -1.00 -70.09 403.43 1.64 -68.46 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: -0.49 Total: 37.20 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.75 Total: 2.57 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -4.04 Total: -103.24 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: -1.61 Total: -51.17 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -70.09 1.64 -68.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350831516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.130 kcal (2) G-P(sol) polarization free energy of solvation -70.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds