Wall clock time and date at job start Tue Mar 31 2020 18:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46831 * 2 1 4 4 N 1.46496 * 109.47062 * 120.00309 * 2 1 3 5 5 C 1.34775 * 120.00075 * 85.00557 * 4 2 1 6 6 O 1.21282 * 119.99553 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00255 * 179.97438 * 5 4 2 8 8 H 1.08998 * 109.47242 * 300.00149 * 7 5 4 9 9 C 1.53007 * 109.46863 * 59.99554 * 7 5 4 10 10 N 1.46495 * 109.47364 * 179.97438 * 7 5 4 11 11 C 1.34783 * 119.99931 * 154.99950 * 10 7 5 12 12 O 1.21281 * 119.99796 * 0.02562 * 11 10 7 13 13 C 1.50697 * 119.99878 * 180.02562 * 11 10 7 14 14 C 1.50699 * 109.46970 * 180.02562 * 13 11 10 15 15 C 1.38328 * 119.96224 * 270.02075 * 14 13 11 16 16 C 1.38279 * 120.13490 * 179.97438 * 15 14 13 17 17 C 1.38120 * 120.07187 * 359.77180 * 16 15 14 18 18 C 1.38861 * 119.92847 * 0.50048 * 17 16 15 19 19 O 1.35751 * 120.06597 * 179.74703 * 18 17 16 20 20 C 1.34829 * 117.00376 * 354.17384 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38657 * 120.00083 * 185.03464 * 20 19 18 23 23 N 1.31555 * 119.99797 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99748 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47410 * 90.00109 * 24 22 20 26 26 H 1.48504 * 109.46801 * 209.99865 * 24 22 20 27 27 H 1.48497 * 109.47495 * 329.99577 * 24 22 20 28 28 C 1.38073 * 119.96952 * 89.99515 * 14 13 11 29 29 H 1.08999 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47330 * 299.99924 * 1 2 3 31 31 H 1.09003 * 109.47606 * 59.99437 * 1 2 3 32 32 H 1.09004 * 109.46914 * 240.00708 * 2 1 3 33 33 H 1.08999 * 109.46435 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47568 * 300.00196 * 3 2 1 35 35 H 1.09004 * 109.46793 * 60.00635 * 3 2 1 36 36 H 0.97000 * 119.99560 * 264.99412 * 4 2 1 37 37 H 1.09003 * 109.46627 * 180.02562 * 9 7 5 38 38 H 1.09002 * 109.47152 * 299.99682 * 9 7 5 39 39 H 1.08993 * 109.47402 * 60.00295 * 9 7 5 40 40 H 0.97001 * 120.00257 * 335.00747 * 10 7 5 41 41 H 1.08996 * 109.47386 * 59.99804 * 13 11 10 42 42 H 1.08997 * 109.47038 * 299.99640 * 13 11 10 43 43 H 1.08001 * 119.93314 * 359.97438 * 15 14 13 44 44 H 1.07999 * 119.96467 * 180.02562 * 16 15 14 45 45 H 1.08001 * 120.03711 * 180.27572 * 17 16 15 46 46 H 0.96998 * 119.99749 * 179.97438 * 23 22 20 47 47 H 1.08001 * 120.03594 * 0.04940 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -2.0322 1.1942 6 8 1.8583 -2.6677 0.2024 7 6 2.6500 -2.7427 2.4244 8 1 3.6492 -2.3826 2.6690 9 6 1.7064 -2.4635 3.5960 10 7 2.6987 -4.1846 2.1700 11 6 3.5463 -4.9641 2.8703 12 8 4.2684 -4.4720 3.7113 13 6 3.5968 -6.4473 2.6083 14 6 4.6175 -7.0834 3.5164 15 6 5.9327 -7.1992 3.1036 16 6 6.8722 -7.7817 3.9342 17 6 6.5009 -8.2456 5.1811 18 6 5.1803 -8.1360 5.5960 19 8 4.8113 -8.5956 6.8189 20 6 5.7458 -9.2555 7.5325 21 1 6.7575 -9.3273 7.1614 22 6 5.4079 -9.8420 8.7426 23 7 6.3196 -10.4863 9.4386 24 14 3.6578 -9.7183 9.3840 25 1 2.8659 -10.8722 8.8873 26 1 3.6728 -9.7308 10.8689 27 1 3.0435 -8.4538 8.9058 28 6 4.2391 -7.5494 4.7598 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9565 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 2.2491 -0.1823 1.9894 37 1 2.0704 -2.9770 4.4859 38 1 1.6698 -1.3907 3.7855 39 1 0.7071 -2.8236 3.3516 40 1 2.1210 -4.5782 1.4976 41 1 3.8747 -6.6234 1.5691 42 1 2.6170 -6.8839 2.8014 43 1 6.2262 -6.8339 2.1306 44 1 7.8984 -7.8704 3.6093 45 1 7.2362 -8.6965 5.8311 46 1 6.0833 -10.8962 10.2853 47 1 3.2121 -7.4591 5.0814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362865771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:37 Heat of formation + Delta-G solvation = -84.105782 kcal Electronic energy + Delta-G solvation = -27829.514909 eV Core-core repulsion = 23784.839985 eV Total energy + Delta-G solvation = -4044.674923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73512 -39.62105 -38.83298 -36.75299 -36.43863 -35.05809 -32.67101 -32.34324 -31.97234 -30.31277 -29.34053 -27.74582 -27.06699 -25.18807 -24.85996 -22.19375 -21.67030 -21.11016 -20.58631 -20.19832 -18.14128 -17.64203 -17.18266 -16.87646 -16.45686 -15.74591 -15.64944 -15.34196 -15.07179 -14.70339 -14.56092 -14.15505 -13.91646 -13.82533 -13.60220 -13.52896 -13.36070 -12.97883 -12.87418 -12.71209 -12.66066 -12.49673 -12.39007 -12.12298 -11.98826 -11.90254 -11.59655 -11.48854 -11.26283 -10.79742 -10.76262 -10.67164 -10.23119 -10.11707 -9.82388 -9.61273 -9.33787 -9.26994 -8.82183 -8.09116 -7.29982 -6.36061 -4.02532 2.04218 2.15933 2.34186 2.50555 2.73120 3.21721 3.26344 3.28762 3.44419 4.13775 4.28452 4.37084 4.51338 4.53194 4.70422 4.71880 4.78453 4.80821 4.98932 5.04867 5.12273 5.15331 5.18568 5.25922 5.28899 5.38750 5.41008 5.49333 5.58034 5.63629 5.74091 5.74591 5.83877 5.90484 6.00307 6.17646 6.22050 6.31125 6.58615 6.84792 6.98164 7.15950 7.27248 7.37128 7.41517 7.66597 7.71687 7.86584 8.10016 8.24378 8.99609 9.63099 10.71843 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.002076 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.921099 B =13483.766064 C =14238.724621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 C -0.162 4.162 4 N -0.723 5.723 5 C 0.515 3.485 6 O -0.535 6.535 7 C 0.126 3.874 8 H 0.114 0.886 9 C -0.160 4.160 10 N -0.722 5.722 11 C 0.518 3.482 12 O -0.519 6.519 13 C -0.093 4.093 14 C -0.035 4.035 15 C -0.187 4.187 16 C -0.076 4.076 17 C -0.217 4.217 18 C 0.160 3.840 19 O -0.220 6.220 20 C -0.387 4.387 21 H 0.106 0.894 22 C 0.062 3.938 23 N -0.882 5.882 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.260 1.260 28 C -0.174 4.174 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.402 0.598 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.408 0.592 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.132 0.868 46 H 0.278 0.722 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.247 21.338 -18.850 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 C -0.219 4.219 4 N -0.376 5.376 5 C 0.300 3.700 6 O -0.411 6.411 7 C 0.017 3.983 8 H 0.132 0.868 9 C -0.219 4.219 10 N -0.378 5.378 11 C 0.305 3.695 12 O -0.393 6.393 13 C -0.132 4.132 14 C -0.035 4.035 15 C -0.206 4.206 16 C -0.095 4.095 17 C -0.236 4.236 18 C 0.108 3.892 19 O -0.125 6.125 20 C -0.463 4.463 21 H 0.123 0.877 22 C -0.141 4.141 23 N -0.520 5.520 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.184 1.184 28 C -0.193 4.193 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.237 0.763 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.245 0.755 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.150 0.850 46 H 0.088 0.912 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.082 21.121 -18.625 30.262 hybrid contribution -0.682 0.088 0.470 0.833 sum -11.764 21.209 -18.155 30.296 Atomic orbital electron populations 1.22188 0.95076 1.02747 1.02209 1.20979 0.94312 0.92911 0.88692 1.22088 1.01887 0.94855 1.03091 1.46069 1.67668 1.06774 1.17096 1.20723 0.77219 0.82620 0.89402 1.90699 1.49743 1.65866 1.34789 1.20693 1.02155 0.82883 0.92566 0.86817 1.22151 0.99310 1.02301 0.98103 1.45822 1.43384 1.06043 1.42576 1.20789 0.78868 0.89151 0.80669 1.90756 1.40947 1.75258 1.32366 1.20571 1.00838 0.90753 1.01078 1.18652 0.93459 0.97825 0.93599 1.20432 0.92867 1.06942 1.00378 1.20735 0.98270 0.96854 0.93604 1.21294 0.96619 1.07652 0.98063 1.19010 0.92370 0.92687 0.85127 1.83566 1.40549 1.64654 1.23758 1.20761 0.91932 1.31255 1.02363 0.87674 1.24453 0.99436 0.94985 0.95187 1.69649 1.33808 1.33950 1.14605 0.86188 0.83379 0.79809 0.77569 1.19939 1.20852 1.18382 1.19937 0.98629 1.06884 0.93874 0.92012 0.92373 0.91547 0.89325 0.91823 0.90789 0.91922 0.76283 0.90229 0.91326 0.91789 0.75519 0.88082 0.88088 0.87706 0.87187 0.85009 0.91152 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 9.48 37.16 0.35 -0.53 16 2 C 0.14 0.76 3.18 -67.93 -0.22 0.55 16 3 C -0.16 -0.55 9.38 37.16 0.35 -0.21 16 4 N -0.72 -4.39 4.97 -53.81 -0.27 -4.66 16 5 C 0.51 4.64 7.19 -10.99 -0.08 4.56 16 6 O -0.53 -6.45 15.50 5.56 0.09 -6.37 16 7 C 0.13 1.18 2.99 -69.08 -0.21 0.97 16 8 H 0.11 1.14 7.58 -51.93 -0.39 0.74 16 9 C -0.16 -1.28 9.38 37.16 0.35 -0.93 16 10 N -0.72 -7.78 4.95 -54.93 -0.27 -8.05 16 11 C 0.52 7.20 7.79 -10.98 -0.09 7.11 16 12 O -0.52 -9.39 15.70 5.56 0.09 -9.30 16 13 C -0.09 -1.20 5.83 -29.04 -0.17 -1.37 16 14 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 15 C -0.19 -3.33 9.70 -39.53 -0.38 -3.71 16 16 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 17 C -0.22 -4.91 9.17 -39.39 -0.36 -5.27 16 18 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 19 O -0.22 -5.99 8.59 0.05 0.00 -5.99 16 20 C -0.39 -11.19 9.95 30.89 0.31 -10.88 16 21 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 22 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 23 N -0.88 -25.90 13.96 55.48 0.77 -25.13 16 24 Si 0.90 22.12 28.62 -169.99 -4.86 17.25 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 28 C -0.17 -3.61 9.64 -39.40 -0.38 -3.99 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.66 7.58 -51.93 -0.39 0.27 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.40 1.52 8.02 -40.82 -0.33 1.19 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.37 7.56 -51.93 -0.39 -0.02 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.41 3.87 7.79 -40.82 -0.32 3.55 16 41 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 42 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 43 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.13 3.10 5.64 -52.49 -0.30 2.80 16 46 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.11 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -35.02 397.23 -7.24 -42.26 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.03 Total: 5.34 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.74 Total: -11.35 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.24 Total: -37.83 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: 0.17 Total: -21.66 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.86 Total: 17.25 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.02 -7.24 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362865771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.845 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds