Wall clock time and date at job start Tue Mar 31 2020 18:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46831 * 2 1 4 4 N 1.46496 * 109.47062 * 120.00309 * 2 1 3 5 5 C 1.34775 * 120.00075 * 85.00557 * 4 2 1 6 6 O 1.21282 * 119.99553 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00255 * 179.97438 * 5 4 2 8 8 H 1.08998 * 109.47242 * 300.00149 * 7 5 4 9 9 C 1.53007 * 109.46863 * 59.99554 * 7 5 4 10 10 N 1.46495 * 109.47364 * 179.97438 * 7 5 4 11 11 C 1.34783 * 119.99931 * 154.99950 * 10 7 5 12 12 O 1.21281 * 119.99796 * 0.02562 * 11 10 7 13 13 C 1.50697 * 119.99878 * 180.02562 * 11 10 7 14 14 C 1.50699 * 109.46970 * 180.02562 * 13 11 10 15 15 C 1.38328 * 119.96224 * 270.02075 * 14 13 11 16 16 C 1.38279 * 120.13490 * 179.97438 * 15 14 13 17 17 C 1.38120 * 120.07187 * 359.77180 * 16 15 14 18 18 C 1.38861 * 119.92847 * 0.50048 * 17 16 15 19 19 O 1.35751 * 120.06597 * 179.74703 * 18 17 16 20 20 C 1.34829 * 117.00376 * 354.17384 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38657 * 120.00083 * 185.03464 * 20 19 18 23 23 N 1.31555 * 119.99797 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99748 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47410 * 90.00109 * 24 22 20 26 26 H 1.48504 * 109.46801 * 209.99865 * 24 22 20 27 27 H 1.48497 * 109.47495 * 329.99577 * 24 22 20 28 28 C 1.38073 * 119.96952 * 89.99515 * 14 13 11 29 29 H 1.08999 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47330 * 299.99924 * 1 2 3 31 31 H 1.09003 * 109.47606 * 59.99437 * 1 2 3 32 32 H 1.09004 * 109.46914 * 240.00708 * 2 1 3 33 33 H 1.08999 * 109.46435 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47568 * 300.00196 * 3 2 1 35 35 H 1.09004 * 109.46793 * 60.00635 * 3 2 1 36 36 H 0.97000 * 119.99560 * 264.99412 * 4 2 1 37 37 H 1.09003 * 109.46627 * 180.02562 * 9 7 5 38 38 H 1.09002 * 109.47152 * 299.99682 * 9 7 5 39 39 H 1.08993 * 109.47402 * 60.00295 * 9 7 5 40 40 H 0.97001 * 120.00257 * 335.00747 * 10 7 5 41 41 H 1.08996 * 109.47386 * 59.99804 * 13 11 10 42 42 H 1.08997 * 109.47038 * 299.99640 * 13 11 10 43 43 H 1.08001 * 119.93314 * 359.97438 * 15 14 13 44 44 H 1.07999 * 119.96467 * 180.02562 * 16 15 14 45 45 H 1.08001 * 120.03711 * 180.27572 * 17 16 15 46 46 H 0.96998 * 119.99749 * 179.97438 * 23 22 20 47 47 H 1.08001 * 120.03594 * 0.04940 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -2.0322 1.1942 6 8 1.8583 -2.6677 0.2024 7 6 2.6500 -2.7427 2.4244 8 1 3.6492 -2.3826 2.6690 9 6 1.7064 -2.4635 3.5960 10 7 2.6987 -4.1846 2.1700 11 6 3.5463 -4.9641 2.8703 12 8 4.2684 -4.4720 3.7113 13 6 3.5968 -6.4473 2.6083 14 6 4.6175 -7.0834 3.5164 15 6 5.9327 -7.1992 3.1036 16 6 6.8722 -7.7817 3.9342 17 6 6.5009 -8.2456 5.1811 18 6 5.1803 -8.1360 5.5960 19 8 4.8113 -8.5956 6.8189 20 6 5.7458 -9.2555 7.5325 21 1 6.7575 -9.3273 7.1614 22 6 5.4079 -9.8420 8.7426 23 7 6.3196 -10.4863 9.4386 24 14 3.6578 -9.7183 9.3840 25 1 2.8659 -10.8722 8.8873 26 1 3.6728 -9.7308 10.8689 27 1 3.0435 -8.4538 8.9058 28 6 4.2391 -7.5494 4.7598 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9565 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 2.2491 -0.1823 1.9894 37 1 2.0704 -2.9770 4.4859 38 1 1.6698 -1.3907 3.7855 39 1 0.7071 -2.8236 3.3516 40 1 2.1210 -4.5782 1.4976 41 1 3.8747 -6.6234 1.5691 42 1 2.6170 -6.8839 2.8014 43 1 6.2262 -6.8339 2.1306 44 1 7.8984 -7.8704 3.6093 45 1 7.2362 -8.6965 5.8311 46 1 6.0833 -10.8962 10.2853 47 1 3.2121 -7.4591 5.0814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362865771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:36 Heat of formation + Delta-G solvation = -109.027896 kcal Electronic energy + Delta-G solvation = -27830.595612 eV Core-core repulsion = 23784.839985 eV Total energy + Delta-G solvation = -4045.755627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58148 -40.95373 -40.21726 -38.33350 -37.13162 -35.98420 -34.47611 -33.73676 -32.92524 -31.25483 -30.88585 -28.37527 -28.08852 -27.16591 -25.67340 -23.44139 -22.93539 -22.14067 -21.46453 -21.29032 -19.67918 -19.15030 -18.60023 -17.79137 -17.32483 -16.87289 -16.77879 -16.40191 -16.38626 -16.02338 -15.66447 -15.58537 -15.15565 -15.04708 -14.91958 -14.56131 -14.40474 -14.17474 -14.04093 -13.92317 -13.56399 -13.40902 -13.17297 -13.04594 -13.03704 -12.85768 -12.63972 -12.51394 -12.43543 -12.33973 -12.29933 -11.92621 -11.91385 -11.30887 -11.04742 -10.95997 -10.88571 -10.23706 -10.15453 -9.66774 -9.06143 -8.49543 -6.22215 0.48420 0.70445 1.30143 1.34815 1.44795 1.51577 1.62571 1.82470 2.28386 2.39499 2.79261 3.05070 3.15170 3.53412 3.75931 3.94345 3.97014 4.06494 4.08567 4.14346 4.17339 4.30555 4.32601 4.43076 4.55344 4.60987 4.65594 4.71513 4.74475 4.75942 4.77298 4.93892 4.97373 5.01267 5.16399 5.25032 5.27339 5.32675 5.35606 5.40171 5.49395 5.65531 5.73105 5.77161 5.91874 6.24889 6.42522 6.50491 6.84696 7.09671 7.23961 7.59587 8.62217 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.002076 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.921099 B =13483.766064 C =14238.724621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 C -0.155 4.155 4 N -0.709 5.709 5 C 0.519 3.481 6 O -0.568 6.568 7 C 0.124 3.876 8 H 0.108 0.892 9 C -0.154 4.154 10 N -0.709 5.709 11 C 0.521 3.479 12 O -0.569 6.569 13 C -0.091 4.091 14 C -0.027 4.027 15 C -0.171 4.171 16 C -0.078 4.078 17 C -0.239 4.239 18 C 0.119 3.881 19 O -0.246 6.246 20 C -0.399 4.399 21 H 0.080 0.920 22 C 0.009 3.991 23 N -0.923 5.923 24 Si 0.971 3.029 25 H -0.263 1.263 26 H -0.266 1.266 27 H -0.266 1.266 28 C -0.179 4.179 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.415 0.585 37 H 0.055 0.945 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.417 0.583 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.107 0.893 46 H 0.285 0.715 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.255 23.699 -21.372 34.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 C -0.213 4.213 4 N -0.362 5.362 5 C 0.304 3.696 6 O -0.447 6.447 7 C 0.015 3.985 8 H 0.126 0.874 9 C -0.213 4.213 10 N -0.364 5.364 11 C 0.309 3.691 12 O -0.447 6.447 13 C -0.130 4.130 14 C -0.028 4.028 15 C -0.190 4.190 16 C -0.096 4.096 17 C -0.259 4.259 18 C 0.070 3.930 19 O -0.154 6.154 20 C -0.476 4.476 21 H 0.097 0.903 22 C -0.190 4.190 23 N -0.564 5.564 24 Si 0.794 3.206 25 H -0.188 1.188 26 H -0.191 1.191 27 H -0.190 1.190 28 C -0.198 4.198 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.253 0.747 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.255 0.745 41 H 0.157 0.843 42 H 0.145 0.855 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.125 0.875 46 H 0.094 0.906 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.109 23.534 -21.199 34.280 hybrid contribution -0.011 -0.454 0.917 1.023 sum -13.120 23.080 -20.281 33.409 Atomic orbital electron populations 1.22149 0.94675 1.01577 1.03387 1.21064 0.94598 0.93931 0.87557 1.22048 1.01750 0.93200 1.04255 1.46013 1.66368 1.05909 1.17870 1.20603 0.76966 0.83383 0.88633 1.90689 1.51514 1.66720 1.35764 1.20797 1.02299 0.82048 0.93319 0.87386 1.22105 0.98840 1.04012 0.96299 1.45705 1.42293 1.06647 1.41769 1.20860 0.78547 0.89587 0.80121 1.90755 1.43183 1.76139 1.34609 1.20682 1.00774 0.89775 1.01792 1.19170 0.94858 0.95896 0.92839 1.21005 0.92402 1.04172 1.01389 1.21101 1.00358 0.95916 0.92192 1.21321 0.95907 1.09038 0.99603 1.19588 0.93952 0.94350 0.85115 1.83505 1.40102 1.66390 1.25441 1.20707 0.91577 1.32089 1.03178 0.90298 1.25290 1.03698 0.94692 0.95271 1.69732 1.35775 1.35490 1.15435 0.85209 0.78180 0.79589 0.77668 1.18773 1.19075 1.19035 1.20261 0.98595 1.06366 0.94609 0.94270 0.91238 0.90385 0.91340 0.91979 0.89817 0.90591 0.74731 0.92594 0.88468 0.91351 0.74489 0.84346 0.85469 0.83625 0.84206 0.87466 0.90585 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.48 71.98 0.68 -0.72 16 2 C 0.13 1.24 3.18 44.99 0.14 1.38 16 3 C -0.15 -0.65 9.38 71.98 0.68 0.03 16 4 N -0.71 -7.04 4.97 -442.53 -2.20 -9.24 16 5 C 0.52 8.39 7.19 87.66 0.63 9.02 16 6 O -0.57 -12.86 15.50 -3.03 -0.05 -12.91 16 7 C 0.12 2.08 2.99 44.25 0.13 2.22 16 8 H 0.11 2.00 7.58 -2.39 -0.02 1.98 16 9 C -0.15 -2.17 9.38 71.98 0.68 -1.50 16 10 N -0.71 -13.58 4.95 -446.10 -2.21 -15.79 16 11 C 0.52 13.14 7.79 87.66 0.68 13.83 16 12 O -0.57 -19.78 15.70 -3.03 -0.05 -19.83 16 13 C -0.09 -1.99 5.83 29.10 0.17 -1.82 16 14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.97 16 15 C -0.17 -5.54 9.70 22.30 0.22 -5.32 16 16 C -0.08 -2.89 10.04 22.25 0.22 -2.66 16 17 C -0.24 -11.26 9.17 22.39 0.21 -11.05 16 18 C 0.12 5.92 6.65 22.58 0.15 6.07 16 19 O -0.25 -14.08 8.59 -22.74 -0.20 -14.28 16 20 C -0.40 -24.47 9.95 67.92 0.68 -23.80 16 21 H 0.08 5.07 5.44 -2.91 -0.02 5.06 16 22 C 0.01 0.51 5.49 84.83 0.47 0.98 16 23 N -0.92 -56.50 13.96 21.61 0.30 -56.19 16 24 Si 0.97 46.80 28.62 68.60 1.96 48.76 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 28 C -0.18 -7.35 9.64 22.39 0.22 -7.14 16 29 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.95 7.58 -2.38 -0.02 0.93 16 33 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.08 0.15 8.14 -2.38 -0.02 0.13 16 36 H 0.42 1.96 8.02 -92.71 -0.74 1.22 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 0.78 7.56 -2.39 -0.02 0.76 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.42 6.74 7.79 -92.71 -0.72 6.01 16 41 H 0.14 2.08 8.09 -2.39 -0.02 2.06 16 42 H 0.13 2.20 8.08 -2.39 -0.02 2.18 16 43 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 44 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 45 H 0.11 5.48 5.64 -2.91 -0.02 5.47 16 46 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 47 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -81.32 397.23 2.96 -78.36 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -0.47 Total: 22.59 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 5.86 Total: -21.47 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -4.11 Total: -81.22 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -0.29 Total: -47.02 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.96 Total: 48.76 kcal Total: -81.32 2.96 -78.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362865771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.668 kcal (2) G-P(sol) polarization free energy of solvation -81.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds