Wall clock time and date at job start Tue Mar 31 2020 18:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42908 * 114.00051 * 2 1 4 4 H 1.09001 * 109.46265 * 330.00195 * 3 2 1 5 5 C 1.52998 * 109.47214 * 89.99563 * 3 2 1 6 6 C 1.50690 * 109.47304 * 210.00132 * 3 2 1 7 7 O 1.21280 * 120.00231 * 354.99918 * 6 3 2 8 8 N 1.34781 * 119.99856 * 174.99889 * 6 3 2 9 9 C 1.46504 * 120.00027 * 180.02562 * 8 6 3 10 10 C 1.53937 * 113.73239 * 253.76808 * 9 8 6 11 11 N 1.48189 * 86.09665 * 221.95618 * 10 9 8 12 12 C 1.46904 * 111.06850 * 137.52330 * 11 10 9 13 13 C 1.50693 * 109.47491 * 90.56561 * 12 11 10 14 14 C 1.38302 * 119.92594 * 269.72587 * 13 12 11 15 15 C 1.38107 * 120.06782 * 179.72526 * 14 13 12 16 16 C 1.38881 * 119.92679 * 0.52292 * 15 14 13 17 17 O 1.35748 * 120.06416 * 179.72384 * 16 15 14 18 18 C 1.34835 * 116.99727 * 174.48830 * 17 16 15 19 19 H 1.07999 * 120.00212 * 5.05730 * 18 17 16 20 20 C 1.38657 * 120.00239 * 185.06276 * 18 17 16 21 21 N 1.31560 * 119.99834 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00314 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47227 * 89.99376 * 22 20 18 24 24 H 1.48494 * 109.47384 * 209.99549 * 22 20 18 25 25 H 1.48498 * 109.47152 * 329.99754 * 22 20 18 26 26 C 1.38871 * 119.86371 * 359.75161 * 16 15 14 27 27 C 1.38102 * 119.93378 * 359.97438 * 26 16 15 28 28 C 1.47954 * 90.80168 * 24.59870 * 11 10 9 29 29 H 1.09006 * 109.46483 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47359 * 299.99538 * 1 2 3 31 31 H 1.09002 * 109.47419 * 60.00192 * 1 2 3 32 32 H 1.09004 * 109.47057 * 300.00694 * 5 3 2 33 33 H 1.09001 * 109.46808 * 60.00310 * 5 3 2 34 34 H 1.08994 * 109.47398 * 180.02562 * 5 3 2 35 35 H 0.96995 * 119.99974 * 359.97438 * 8 6 3 36 36 H 1.09007 * 112.93750 * 25.33182 * 9 8 6 37 37 H 1.09003 * 113.75533 * 336.23384 * 10 9 8 38 38 H 1.09000 * 113.76095 * 107.60229 * 10 9 8 39 39 H 1.09010 * 109.46920 * 210.56506 * 12 11 10 40 40 H 1.09006 * 109.47078 * 330.56017 * 12 11 10 41 41 H 1.08001 * 119.96944 * 359.97438 * 14 13 12 42 42 H 1.08000 * 120.03320 * 180.26912 * 15 14 13 43 43 H 0.96995 * 119.99869 * 180.02562 * 21 20 18 44 44 H 1.08005 * 120.03384 * 179.97438 * 26 16 15 45 45 H 1.07996 * 119.96768 * 180.02562 * 27 26 16 46 46 H 1.08998 * 113.75688 * 221.08263 * 28 11 10 47 47 H 1.09004 * 113.76298 * 89.72019 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9993 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3385 1.2640 -0.7104 7 8 3.7896 0.2047 -1.0914 8 7 4.0253 2.4042 -0.9224 9 6 5.3164 2.3639 -1.6135 10 6 6.5240 2.5789 -0.6833 11 7 7.0709 3.4389 -1.7591 12 6 7.6669 4.6623 -1.2057 13 6 9.1273 4.4248 -0.9198 14 6 9.5201 3.9552 0.3203 15 6 10.8572 3.7311 0.5835 16 6 11.8086 3.9884 -0.3950 17 8 13.1242 3.7745 -0.1373 18 6 13.9830 3.9346 -1.1644 19 1 13.6250 4.2994 -2.1158 20 6 15.3257 3.6310 -0.9992 21 7 15.7619 3.1870 0.1599 22 14 16.5156 3.8535 -2.4218 23 1 17.0775 5.2276 -2.3868 24 1 17.6175 2.8650 -2.3048 25 1 15.7977 3.6449 -3.7048 26 6 11.4114 4.4653 -1.6373 27 6 10.0723 4.6819 -1.8963 28 6 5.7080 3.6985 -2.2730 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.2567 1.8015 1.9563 33 1 2.8828 1.0776 1.9563 34 1 2.6605 2.7674 1.4425 35 1 3.6643 3.2515 -0.6180 36 1 5.4186 1.5020 -2.2730 37 1 6.2827 3.1201 0.2315 38 1 7.1061 1.6751 -0.5033 39 1 7.5649 5.4741 -1.9260 40 1 7.1545 4.9301 -0.2816 41 1 8.7802 3.7595 1.0823 42 1 11.1630 3.3602 1.5507 43 1 16.7013 2.9749 0.2756 44 1 12.1490 4.6667 -2.4001 45 1 9.7628 5.0524 -2.8623 46 1 5.6394 3.6876 -3.3608 47 1 5.2275 4.5679 -1.8241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481545119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:34 Heat of formation + Delta-G solvation = -41.023695 kcal Electronic energy + Delta-G solvation = -27531.027541 eV Core-core repulsion = 23488.220797 eV Total energy + Delta-G solvation = -4042.806744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.80678 -39.64266 -38.84876 -37.79496 -36.51822 -34.40465 -32.45449 -32.04168 -30.80320 -30.13326 -27.53910 -27.27048 -26.31295 -25.47200 -24.70507 -23.17037 -21.93686 -20.88992 -20.48191 -20.20754 -17.97009 -17.80343 -17.49240 -16.95514 -16.43636 -15.96889 -15.78600 -15.39879 -15.11679 -14.77377 -14.54417 -14.31150 -14.08003 -13.79711 -13.57894 -13.42794 -13.30293 -13.00766 -12.95241 -12.88401 -12.73945 -12.60193 -12.32695 -11.80625 -11.72389 -11.64604 -11.57622 -11.26677 -11.01489 -10.77369 -10.56731 -10.49471 -10.46640 -10.40079 -9.88649 -9.39608 -9.30680 -8.89660 -8.78752 -8.14595 -7.15684 -6.43016 -4.01742 2.23950 2.25820 2.28023 2.48014 3.14033 3.15612 3.20396 3.48539 3.83314 3.98748 4.19103 4.28182 4.37026 4.49309 4.55726 4.71273 4.80111 4.88304 4.97666 5.00212 5.02518 5.12559 5.16805 5.19275 5.22415 5.31383 5.34283 5.43442 5.58118 5.66137 5.69768 5.73495 5.82730 5.89404 6.11617 6.17971 6.27282 6.46366 6.54146 6.71763 6.90469 6.94267 7.09150 7.12119 7.26663 7.42362 7.46896 7.85181 7.88118 8.02213 9.02742 9.73028 10.75066 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.001762 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.936462 B =15890.046034 C =16085.597176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.086 0.914 5 C -0.171 4.171 6 C 0.514 3.486 7 O -0.513 6.513 8 N -0.721 5.721 9 C 0.119 3.881 10 C -0.005 4.005 11 N -0.465 5.465 12 C 0.083 3.917 13 C -0.177 4.177 14 C -0.066 4.066 15 C -0.193 4.193 16 C 0.156 3.844 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.234 4.234 27 C -0.052 4.052 28 C -0.007 4.007 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.399 0.601 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.106 0.894 46 H 0.096 0.904 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.896 2.427 -0.804 30.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.008 3.992 4 H 0.104 0.896 5 C -0.229 4.229 6 C 0.299 3.701 7 O -0.386 6.386 8 N -0.375 5.375 9 C 0.014 3.986 10 C -0.135 4.135 11 N -0.188 5.188 12 C -0.045 4.045 13 C -0.178 4.178 14 C -0.084 4.084 15 C -0.213 4.213 16 C 0.102 3.898 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.254 4.254 27 C -0.070 4.070 28 C -0.137 4.137 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.234 0.766 36 H 0.142 0.858 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.123 0.877 42 H 0.133 0.867 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.124 0.876 46 H 0.114 0.886 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -28.588 1.078 -1.216 28.635 hybrid contribution -0.282 1.242 0.028 1.274 sum -28.871 2.320 -1.188 28.988 Atomic orbital electron populations 1.22897 0.80508 1.03413 1.00009 1.88076 1.19730 1.24999 1.94916 1.21947 0.93454 0.87022 0.96816 0.89619 1.22235 1.03592 1.02076 0.94974 1.20442 0.86050 0.84266 0.79371 1.90757 1.69045 1.29607 1.49174 1.46010 1.21840 1.09291 1.60311 1.23073 0.80902 0.99851 0.94800 1.24542 0.94832 0.99668 0.94449 1.68684 1.14510 1.13519 1.22094 1.21339 0.93327 0.91832 0.97959 1.18956 0.93109 1.10561 0.95177 1.20426 0.94461 0.97880 0.95670 1.20166 0.91607 1.09860 0.99631 1.19387 0.85559 0.92156 0.92731 1.83976 1.11081 1.76172 1.36957 1.21331 0.88121 1.45558 0.91753 0.89059 1.25289 0.96796 0.96280 0.98172 1.70040 1.15896 1.40915 1.22949 0.85710 0.79461 0.78394 0.79866 1.19913 1.20260 1.19179 1.21151 0.96242 1.09481 0.98503 1.20542 0.92229 0.97145 0.97127 1.24362 0.91090 0.96001 1.02218 0.89025 0.93773 0.93815 0.91123 0.90814 0.90920 0.76638 0.85809 0.90971 0.88642 0.90857 0.93916 0.87701 0.86656 0.92049 0.85607 0.87635 0.88572 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.25 16 2 O -0.36 -3.49 9.89 -55.09 -0.54 -4.04 16 3 C 0.07 0.50 3.13 -27.89 -0.09 0.41 16 4 H 0.09 0.37 7.79 -51.93 -0.40 -0.04 16 5 C -0.17 -0.90 9.48 37.16 0.35 -0.55 16 6 C 0.51 5.23 7.18 -10.99 -0.08 5.15 16 7 O -0.51 -7.87 16.13 -14.30 -0.23 -8.10 16 8 N -0.72 -5.38 5.33 -54.95 -0.29 -5.67 16 9 C 0.12 1.14 4.39 -69.64 -0.31 0.83 16 10 C 0.00 -0.06 7.77 -2.63 -0.02 -0.08 16 11 N -0.47 -5.65 6.14 -239.70 -1.47 -7.12 16 12 C 0.08 1.05 4.92 -4.98 -0.02 1.02 16 13 C -0.18 -2.99 5.44 -104.58 -0.57 -3.56 16 14 C -0.07 -1.17 9.69 -39.61 -0.38 -1.55 16 15 C -0.19 -4.14 9.99 -39.39 -0.39 -4.54 16 16 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 17 O -0.18 -5.17 9.76 0.04 0.00 -5.17 16 18 C -0.39 -11.08 9.49 30.89 0.29 -10.78 16 19 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 22 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 C -0.23 -5.18 9.17 -39.40 -0.36 -5.54 16 27 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 28 C -0.01 -0.06 7.70 -2.77 -0.02 -0.08 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.16 7.87 -51.93 -0.41 -0.24 16 31 H 0.04 0.19 8.09 -51.93 -0.42 -0.23 16 32 H 0.07 0.28 7.87 -51.93 -0.41 -0.13 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.24 7.93 -51.93 -0.41 -0.17 16 35 H 0.40 1.66 8.50 -40.82 -0.35 1.31 16 36 H 0.12 1.46 7.51 -51.93 -0.39 1.07 16 37 H 0.07 0.71 7.49 -51.93 -0.39 0.32 16 38 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.07 0.85 8.02 -51.92 -0.42 0.43 16 40 H 0.04 0.47 7.33 -51.93 -0.38 0.09 16 41 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.13 2.79 5.64 -52.48 -0.30 2.49 16 45 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 46 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 LS Contribution 394.97 15.07 5.95 5.95 Total: -1.00 -35.48 394.97 -9.15 -44.63 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.05 Total: 3.40 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -1.25 Total: -14.81 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -1.01 Total: -37.59 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.77 Total: -17.31 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.48 -9.15 -44.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481545119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.603 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds