Wall clock time and date at job start Tue Mar 31 2020 18:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42908 * 114.00051 * 2 1 4 4 H 1.09001 * 109.46265 * 330.00195 * 3 2 1 5 5 C 1.52998 * 109.47214 * 89.99563 * 3 2 1 6 6 C 1.50690 * 109.47304 * 210.00132 * 3 2 1 7 7 O 1.21280 * 120.00231 * 354.99918 * 6 3 2 8 8 N 1.34781 * 119.99856 * 174.99889 * 6 3 2 9 9 C 1.46504 * 120.00027 * 180.02562 * 8 6 3 10 10 C 1.53937 * 113.73239 * 253.76808 * 9 8 6 11 11 N 1.48189 * 86.09665 * 221.95618 * 10 9 8 12 12 C 1.46904 * 111.06850 * 137.52330 * 11 10 9 13 13 C 1.50693 * 109.47491 * 90.56561 * 12 11 10 14 14 C 1.38302 * 119.92594 * 269.72587 * 13 12 11 15 15 C 1.38107 * 120.06782 * 179.72526 * 14 13 12 16 16 C 1.38881 * 119.92679 * 0.52292 * 15 14 13 17 17 O 1.35748 * 120.06416 * 179.72384 * 16 15 14 18 18 C 1.34835 * 116.99727 * 174.48830 * 17 16 15 19 19 H 1.07999 * 120.00212 * 5.05730 * 18 17 16 20 20 C 1.38657 * 120.00239 * 185.06276 * 18 17 16 21 21 N 1.31560 * 119.99834 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00314 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47227 * 89.99376 * 22 20 18 24 24 H 1.48494 * 109.47384 * 209.99549 * 22 20 18 25 25 H 1.48498 * 109.47152 * 329.99754 * 22 20 18 26 26 C 1.38871 * 119.86371 * 359.75161 * 16 15 14 27 27 C 1.38102 * 119.93378 * 359.97438 * 26 16 15 28 28 C 1.47954 * 90.80168 * 24.59870 * 11 10 9 29 29 H 1.09006 * 109.46483 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47359 * 299.99538 * 1 2 3 31 31 H 1.09002 * 109.47419 * 60.00192 * 1 2 3 32 32 H 1.09004 * 109.47057 * 300.00694 * 5 3 2 33 33 H 1.09001 * 109.46808 * 60.00310 * 5 3 2 34 34 H 1.08994 * 109.47398 * 180.02562 * 5 3 2 35 35 H 0.96995 * 119.99974 * 359.97438 * 8 6 3 36 36 H 1.09007 * 112.93750 * 25.33182 * 9 8 6 37 37 H 1.09003 * 113.75533 * 336.23384 * 10 9 8 38 38 H 1.09000 * 113.76095 * 107.60229 * 10 9 8 39 39 H 1.09010 * 109.46920 * 210.56506 * 12 11 10 40 40 H 1.09006 * 109.47078 * 330.56017 * 12 11 10 41 41 H 1.08001 * 119.96944 * 359.97438 * 14 13 12 42 42 H 1.08000 * 120.03320 * 180.26912 * 15 14 13 43 43 H 0.96995 * 119.99869 * 180.02562 * 21 20 18 44 44 H 1.08005 * 120.03384 * 179.97438 * 26 16 15 45 45 H 1.07996 * 119.96768 * 180.02562 * 27 26 16 46 46 H 1.08998 * 113.75688 * 221.08263 * 28 11 10 47 47 H 1.09004 * 113.76298 * 89.72019 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9993 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3385 1.2640 -0.7104 7 8 3.7896 0.2047 -1.0914 8 7 4.0253 2.4042 -0.9224 9 6 5.3164 2.3639 -1.6135 10 6 6.5240 2.5789 -0.6833 11 7 7.0709 3.4389 -1.7591 12 6 7.6669 4.6623 -1.2057 13 6 9.1273 4.4248 -0.9198 14 6 9.5201 3.9552 0.3203 15 6 10.8572 3.7311 0.5835 16 6 11.8086 3.9884 -0.3950 17 8 13.1242 3.7745 -0.1373 18 6 13.9830 3.9346 -1.1644 19 1 13.6250 4.2994 -2.1158 20 6 15.3257 3.6310 -0.9992 21 7 15.7619 3.1870 0.1599 22 14 16.5156 3.8535 -2.4218 23 1 17.0775 5.2276 -2.3868 24 1 17.6175 2.8650 -2.3048 25 1 15.7977 3.6449 -3.7048 26 6 11.4114 4.4653 -1.6373 27 6 10.0723 4.6819 -1.8963 28 6 5.7080 3.6985 -2.2730 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.2567 1.8015 1.9563 33 1 2.8828 1.0776 1.9563 34 1 2.6605 2.7674 1.4425 35 1 3.6643 3.2515 -0.6180 36 1 5.4186 1.5020 -2.2730 37 1 6.2827 3.1201 0.2315 38 1 7.1061 1.6751 -0.5033 39 1 7.5649 5.4741 -1.9260 40 1 7.1545 4.9301 -0.2816 41 1 8.7802 3.7595 1.0823 42 1 11.1630 3.3602 1.5507 43 1 16.7013 2.9749 0.2756 44 1 12.1490 4.6667 -2.4001 45 1 9.7628 5.0524 -2.8623 46 1 5.6394 3.6876 -3.3608 47 1 5.2275 4.5679 -1.8241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481545119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:33 Heat of formation + Delta-G solvation = -68.473353 kcal Electronic energy + Delta-G solvation = -27532.217847 eV Core-core repulsion = 23488.220797 eV Total energy + Delta-G solvation = -4043.997050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.62037 -40.78896 -40.21161 -38.53014 -38.13823 -35.27636 -34.33427 -32.90035 -31.91761 -31.72244 -28.79146 -27.68655 -27.32265 -27.08997 -25.56027 -24.14383 -23.59285 -21.97920 -21.51680 -21.07254 -19.83425 -18.85328 -18.45690 -18.11068 -17.18479 -16.76753 -16.62521 -16.42076 -16.35773 -16.06788 -15.70635 -15.67665 -15.49612 -15.22028 -14.76755 -14.46230 -14.37288 -14.20267 -13.98726 -13.66370 -13.61428 -13.52202 -13.31227 -13.02744 -12.86825 -12.78878 -12.63406 -12.42330 -12.29763 -12.13852 -12.10681 -11.87567 -11.64447 -11.16117 -11.07956 -10.79202 -10.55457 -10.15287 -9.77138 -9.71258 -8.89171 -8.47302 -6.15460 0.61748 0.69819 1.34201 1.43648 1.51349 1.52062 1.82957 2.17680 2.75414 2.96687 3.07399 3.23281 3.51033 3.53322 3.65715 3.90894 3.93439 4.00147 4.05398 4.07884 4.19605 4.22228 4.41963 4.44886 4.45864 4.56020 4.61231 4.65475 4.68909 4.75666 4.78036 4.81777 4.87071 4.87657 4.99650 5.10307 5.14816 5.21643 5.27098 5.40751 5.42209 5.60655 5.73482 5.84685 6.03158 6.07110 6.08947 6.26363 6.53712 6.97455 7.21308 7.78965 8.76096 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.001762 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.936462 B =15890.046034 C =16085.597176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.402 6.402 3 C 0.070 3.930 4 H 0.122 0.878 5 C -0.166 4.166 6 C 0.508 3.492 7 O -0.576 6.576 8 N -0.699 5.699 9 C 0.121 3.879 10 C -0.007 4.007 11 N -0.495 5.495 12 C 0.085 3.915 13 C -0.150 4.150 14 C -0.059 4.059 15 C -0.207 4.207 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.414 4.414 19 H 0.101 0.899 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.261 1.261 24 H -0.271 1.271 25 H -0.254 1.254 26 C -0.245 4.245 27 C -0.054 4.054 28 C 0.012 3.988 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.421 0.579 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.143 0.857 42 H 0.109 0.891 43 H 0.272 0.728 44 H 0.116 0.884 45 H 0.138 0.862 46 H 0.102 0.898 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.925 4.973 -1.894 34.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.009 3.991 4 H 0.139 0.861 5 C -0.224 4.224 6 C 0.295 3.705 7 O -0.454 6.454 8 N -0.354 5.354 9 C 0.015 3.985 10 C -0.137 4.137 11 N -0.218 5.218 12 C -0.042 4.042 13 C -0.151 4.151 14 C -0.078 4.078 15 C -0.227 4.227 16 C 0.061 3.939 17 O -0.142 6.142 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.186 1.186 24 H -0.196 1.196 25 H -0.178 1.178 26 C -0.264 4.264 27 C -0.072 4.072 28 C -0.117 4.117 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.259 0.741 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.161 0.839 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.155 0.845 46 H 0.120 0.880 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -32.706 3.689 -2.303 32.994 hybrid contribution 0.545 0.470 0.385 0.816 sum -32.162 4.160 -1.918 32.486 Atomic orbital electron populations 1.23080 0.78620 1.04051 1.01575 1.88027 1.21976 1.26844 1.95193 1.22123 0.92084 0.86981 0.97910 0.86053 1.22242 1.04235 1.02551 0.93364 1.21170 0.87033 0.83782 0.78512 1.90732 1.70737 1.32003 1.51969 1.45787 1.20725 1.09707 1.59133 1.22776 0.81436 0.99873 0.94379 1.24566 0.94923 0.98792 0.95454 1.68565 1.17139 1.13494 1.22572 1.21405 0.89922 0.92729 1.00190 1.19602 0.95869 1.05938 0.93696 1.20852 0.93339 0.96367 0.97213 1.20444 0.92972 1.10217 0.99042 1.19948 0.84884 0.94251 0.94853 1.83937 1.13001 1.79241 1.37993 1.21819 0.88884 1.45996 0.92288 0.88207 1.26604 0.98475 0.95707 1.01349 1.70188 1.16464 1.43640 1.25691 0.84578 0.76581 0.78850 0.76147 1.18584 1.19597 1.17804 1.21262 0.97981 1.09760 0.97404 1.20929 0.90811 0.96469 0.99024 1.24386 0.88509 0.96082 1.02699 0.89082 0.91764 0.92547 0.89372 0.93310 0.88422 0.74094 0.88833 0.88755 0.91661 0.88681 0.91084 0.83939 0.87244 0.91875 0.86611 0.84458 0.87956 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.43 16 2 O -0.40 -7.39 9.89 -129.99 -1.29 -8.67 16 3 C 0.07 0.83 3.13 29.84 0.09 0.93 16 4 H 0.12 0.53 7.79 -2.39 -0.02 0.52 16 5 C -0.17 -1.23 9.48 71.98 0.68 -0.55 16 6 C 0.51 9.61 7.18 87.65 0.63 10.24 16 7 O -0.58 -18.11 16.13 15.96 0.26 -17.85 16 8 N -0.70 -8.21 5.33 -446.15 -2.38 -10.59 16 9 C 0.12 2.02 4.39 46.56 0.20 2.23 16 10 C -0.01 -0.14 7.77 86.37 0.67 0.53 16 11 N -0.49 -10.00 6.14 -912.27 -5.60 -15.60 16 12 C 0.09 1.68 4.92 85.55 0.42 2.10 16 13 C -0.15 -4.56 5.44 -19.84 -0.11 -4.67 16 14 C -0.06 -1.98 9.69 22.25 0.22 -1.77 16 15 C -0.21 -9.09 9.99 22.39 0.22 -8.87 16 16 C 0.11 5.71 6.65 22.58 0.15 5.86 16 17 O -0.23 -14.60 9.76 -22.77 -0.22 -14.82 16 18 C -0.41 -24.80 9.49 67.92 0.64 -24.15 16 19 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 20 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 21 N -0.92 -57.80 13.67 21.61 0.30 -57.51 16 22 Si 1.02 43.91 29.55 68.60 2.03 45.94 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 26 C -0.24 -11.00 9.17 22.39 0.21 -10.80 16 27 C -0.05 -1.88 9.69 22.25 0.22 -1.67 16 28 C 0.01 0.14 7.70 86.41 0.67 0.81 16 29 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.06 0.29 7.87 -2.39 -0.02 0.28 16 31 H 0.06 0.34 8.09 -2.39 -0.02 0.32 16 32 H 0.09 0.37 7.87 -2.39 -0.02 0.35 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.10 0.20 7.93 -2.39 -0.02 0.18 16 35 H 0.42 1.33 8.50 -92.71 -0.79 0.55 16 36 H 0.09 2.19 7.51 -2.38 -0.02 2.18 16 37 H 0.09 1.40 7.49 -2.39 -0.02 1.38 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.56 8.02 -2.38 -0.02 1.54 16 40 H 0.07 1.07 7.33 -2.38 -0.02 1.05 16 41 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 43 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 45 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 46 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.11 0.60 7.89 -2.38 -0.02 0.58 16 Total: -1.00 -87.17 394.97 -0.11 -87.28 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.20 Total: 21.13 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 6.61 Total: -29.31 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -7.69 Total: -83.70 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.25 Total: -41.34 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -87.17 -0.11 -87.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481545119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.808 kcal (2) G-P(sol) polarization free energy of solvation -87.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds