Wall clock time and date at job start Tue Mar 31 2020 18:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47076 * 2 1 4 4 O 1.42899 * 109.47003 * 240.00478 * 2 1 3 5 5 C 1.35905 * 117.00211 * 85.60475 * 4 2 1 6 6 C 1.38731 * 120.05556 * 174.57883 * 5 4 2 7 7 C 1.38145 * 119.93955 * 179.74631 * 6 5 4 8 8 C 1.38262 * 120.05848 * 0.50044 * 7 6 5 9 9 C 1.38263 * 120.10936 * 359.77299 * 8 7 6 10 10 C 1.38141 * 120.05960 * 359.97438 * 9 8 7 11 11 C 1.50696 * 109.47356 * 120.00367 * 2 1 3 12 12 O 1.21279 * 120.00300 * 114.99731 * 11 2 1 13 13 N 1.34775 * 120.00234 * 295.00342 * 11 2 1 14 14 C 1.46493 * 120.00293 * 179.97438 * 13 11 2 15 15 C 1.53007 * 109.47194 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.55112 * 304.87404 * 15 14 13 17 17 C 1.53290 * 109.51120 * 184.74485 * 15 14 13 18 18 N 1.47157 * 108.38289 * 187.77036 * 17 15 14 19 19 C 1.36935 * 120.98343 * 230.51136 * 18 17 15 20 20 H 1.07998 * 119.99635 * 25.95490 * 19 18 17 21 21 C 1.38820 * 120.00076 * 205.94981 * 19 18 17 22 22 N 1.31615 * 119.99647 * 15.71699 * 21 19 18 23 23 Si 1.86800 * 119.99864 * 195.71706 * 21 19 18 24 24 H 1.48497 * 109.47203 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46926 * 120.00248 * 23 21 19 26 26 H 1.48496 * 109.46729 * 240.00194 * 23 21 19 27 27 C 1.47152 * 118.03176 * 50.54030 * 18 17 15 28 28 C 1.53292 * 108.38282 * 309.45917 * 27 18 17 29 29 O 1.42958 * 109.22347 * 52.30674 * 28 27 18 30 30 H 1.08999 * 109.46913 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47165 * 299.99527 * 1 2 3 32 32 H 1.09007 * 109.46876 * 59.99534 * 1 2 3 33 33 H 1.08000 * 120.03164 * 359.97438 * 6 5 4 34 34 H 1.08005 * 119.97326 * 180.27408 * 7 6 5 35 35 H 1.07997 * 119.94695 * 179.74877 * 8 7 6 36 36 H 1.08004 * 119.97170 * 179.97438 * 9 8 7 37 37 H 1.08000 * 120.03364 * 180.02562 * 10 9 8 38 38 H 0.97009 * 119.99412 * 359.97438 * 13 11 2 39 39 H 1.09001 * 109.47200 * 59.99958 * 14 13 11 40 40 H 1.09001 * 109.47113 * 299.99433 * 14 13 11 41 41 H 1.09003 * 109.68595 * 307.49545 * 17 15 14 42 42 H 1.09007 * 109.68560 * 68.05234 * 17 15 14 43 43 H 0.96997 * 119.99528 * 179.97438 * 22 21 19 44 44 H 1.09007 * 109.67970 * 189.74008 * 27 18 17 45 45 H 1.08998 * 109.71662 * 69.20385 * 27 18 17 46 46 H 1.09002 * 109.51759 * 292.37791 * 28 27 18 47 47 H 1.08999 * 109.51144 * 172.22994 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.1245 0.0658 -2.3010 6 6 2.6858 -0.4936 -3.4398 7 6 2.7999 0.2585 -4.5929 8 6 2.3649 1.5708 -4.6098 9 6 1.8103 2.1323 -3.4745 10 6 1.6891 1.3829 -2.3204 11 6 2.0324 -0.7105 1.2304 12 8 2.6530 -1.7467 1.1214 13 7 1.7919 -0.1944 2.4520 14 6 2.2798 -0.8853 3.6480 15 6 1.8756 -0.0948 4.8942 16 1 2.2373 0.9299 4.8094 17 6 2.4857 -0.7520 6.1375 18 7 1.9336 -0.0902 7.3303 19 6 2.7553 0.3765 8.3214 20 1 3.7738 0.6533 8.0926 21 6 2.2791 0.4938 9.6200 22 7 1.1677 -0.1175 9.9711 23 14 3.2158 1.5193 10.8692 24 1 4.4235 2.0986 10.2283 25 1 2.3441 2.6153 11.3632 26 1 3.6239 0.6594 12.0091 27 6 0.4725 0.0546 7.4269 28 6 -0.0395 0.6725 6.1207 29 8 0.4512 -0.0899 5.0154 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.0298 -1.5172 -3.4258 34 1 3.2328 -0.1779 -5.4810 35 1 2.4587 2.1583 -5.5111 36 1 1.4716 3.1577 -3.4900 37 1 1.2555 1.8218 -1.4339 38 1 1.2958 0.6346 2.5391 39 1 3.3661 -0.9639 3.6046 40 1 1.8448 -1.8837 3.6938 41 1 2.2314 -1.8118 6.1549 42 1 3.5692 -0.6342 6.1208 43 1 0.8351 -0.0358 10.8786 44 1 0.2227 0.7066 8.2640 45 1 0.0149 -0.9236 7.5744 46 1 0.3152 1.7000 6.0404 47 1 -1.1294 0.6614 6.1154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482205618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:58 Heat of formation + Delta-G solvation = -63.279933 kcal Electronic energy + Delta-G solvation = -28286.348130 eV Core-core repulsion = 24242.576283 eV Total energy + Delta-G solvation = -4043.771847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.86128 -39.56230 -38.52857 -37.50763 -34.99674 -34.36582 -32.74285 -31.53189 -31.13486 -30.54479 -29.88911 -27.60500 -25.88116 -24.63382 -23.27597 -23.07616 -22.45318 -21.73434 -20.52064 -19.60505 -18.72332 -17.66620 -16.90191 -16.50856 -16.18922 -15.96781 -15.85577 -15.45893 -15.05683 -14.74834 -14.63163 -14.43302 -14.22969 -13.84308 -13.75711 -13.44166 -13.28384 -13.11054 -13.04060 -12.75201 -12.69610 -12.34948 -12.13147 -11.89626 -11.62792 -11.38513 -11.16781 -11.11030 -10.92670 -10.75261 -10.46346 -10.29128 -10.04475 -9.90452 -9.70332 -9.33584 -9.13822 -9.09707 -8.60442 -8.51323 -6.81532 -5.89109 -3.33449 0.99876 1.11791 2.39509 2.47672 3.30035 3.37702 3.39813 3.41470 3.46615 4.14530 4.30073 4.38007 4.46798 4.53922 4.55730 4.61011 4.80310 5.02429 5.04563 5.07742 5.22034 5.27781 5.28865 5.35602 5.41004 5.45580 5.67153 5.71959 5.73661 5.78552 5.95886 5.98376 6.06890 6.08357 6.20249 6.21703 6.30768 6.38413 6.42591 6.44358 6.69394 7.05531 7.06727 7.40234 7.47983 7.65527 7.78813 8.09678 8.28086 9.06318 9.68624 10.24857 11.18825 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027528 B = 0.001931 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.898233 B =14499.054641 C =14553.910170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.067 3.933 3 H 0.098 0.902 4 O -0.284 6.284 5 C 0.132 3.868 6 C -0.150 4.150 7 C -0.080 4.080 8 C -0.162 4.162 9 C -0.080 4.080 10 C -0.213 4.213 11 C 0.515 3.485 12 O -0.520 6.520 13 N -0.714 5.714 14 C 0.132 3.868 15 C 0.065 3.935 16 H 0.059 0.941 17 C 0.121 3.879 18 N -0.594 5.594 19 C -0.255 4.255 20 H 0.070 0.930 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.906 3.094 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.289 1.289 27 C 0.138 3.862 28 C 0.040 3.960 29 O -0.390 6.390 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.403 0.597 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.255 0.745 44 H 0.097 0.903 45 H 0.028 0.972 46 H 0.041 0.959 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 5.389 -25.399 26.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.007 3.993 3 H 0.116 0.884 4 O -0.197 6.197 5 C 0.087 3.913 6 C -0.169 4.169 7 C -0.099 4.099 8 C -0.180 4.180 9 C -0.098 4.098 10 C -0.232 4.232 11 C 0.299 3.701 12 O -0.395 6.395 13 N -0.367 5.367 14 C 0.008 3.992 15 C 0.005 3.995 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.318 5.318 19 C -0.384 4.384 20 H 0.088 0.912 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.736 3.264 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.216 1.216 27 C 0.012 3.988 28 C -0.038 4.038 29 O -0.309 6.309 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.238 0.762 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.115 0.885 45 H 0.046 0.954 46 H 0.059 0.941 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.565 4.311 -25.361 25.772 hybrid contribution 0.173 1.258 1.127 1.698 sum -1.391 5.569 -24.234 24.904 Atomic orbital electron populations 1.22330 0.92332 1.04691 1.03940 1.22216 0.95950 0.96969 0.84149 0.88421 1.86226 1.80873 1.36661 1.15914 1.19115 0.95087 0.90302 0.86817 1.20503 1.03568 1.01548 0.91282 1.20990 0.97784 0.93979 0.97099 1.21077 1.02353 0.95813 0.98757 1.20959 0.97094 0.99445 0.92294 1.21333 1.07305 0.94214 1.00345 1.19993 0.80353 0.85655 0.84068 1.90747 1.39493 1.22918 1.86370 1.45820 1.57728 1.28027 1.05170 1.21471 0.99410 0.96745 0.81562 1.22807 0.83148 0.98860 0.94669 0.92282 1.21443 0.97294 0.95168 0.86701 1.44081 1.02080 1.66792 1.18827 1.19253 0.95707 1.36438 0.86972 0.91235 1.25062 0.98142 0.99707 0.96835 1.70023 1.23250 1.43304 1.18217 0.86160 0.79192 0.79793 0.81257 1.20207 1.21484 1.21588 1.21480 0.83561 0.99419 0.94313 1.23335 0.97835 0.94068 0.88577 1.87784 1.19987 1.73543 1.49626 0.90494 0.89870 0.90692 0.85011 0.85342 0.85948 0.85755 0.85205 0.76207 0.89920 0.90405 0.95153 0.91724 0.93503 0.88496 0.95375 0.94108 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.15 37.16 0.34 -1.10 16 2 C 0.07 0.69 2.63 -27.89 -0.07 0.62 16 3 H 0.10 0.78 6.25 -51.93 -0.32 0.45 16 4 O -0.28 -3.58 9.33 -39.30 -0.37 -3.95 16 5 C 0.13 1.42 6.61 -39.22 -0.26 1.16 16 6 C -0.15 -1.47 9.99 -39.43 -0.39 -1.86 16 7 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 8 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 9 C -0.08 -0.60 10.04 -39.61 -0.40 -1.00 16 10 C -0.21 -1.84 8.28 -39.43 -0.33 -2.17 16 11 C 0.52 6.97 7.18 -10.99 -0.08 6.89 16 12 O -0.52 -9.31 16.51 -14.30 -0.24 -9.55 16 13 N -0.71 -8.76 5.46 -60.30 -0.33 -9.09 16 14 C 0.13 1.90 5.35 -4.04 -0.02 1.87 16 15 C 0.07 1.08 2.81 -26.58 -0.07 1.00 16 16 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 17 C 0.12 2.45 6.02 -3.53 -0.02 2.43 16 18 N -0.59 -14.47 3.05 -171.82 -0.52 -15.00 16 19 C -0.25 -6.77 9.66 -15.06 -0.15 -6.92 16 20 H 0.07 1.81 7.87 -52.49 -0.41 1.39 16 21 C 0.00 0.03 4.98 -17.43 -0.09 -0.06 16 22 N -0.90 -25.57 11.04 55.49 0.61 -24.96 16 23 Si 0.91 21.10 29.58 -169.99 -5.03 16.07 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.14 3.19 5.44 -3.53 -0.02 3.17 16 28 C 0.04 0.72 6.98 37.31 0.26 0.98 16 29 O -0.39 -6.89 10.33 -35.23 -0.36 -7.25 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 32 H 0.07 0.52 7.01 -51.93 -0.36 0.16 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.13 0.89 5.47 -52.49 -0.29 0.60 16 38 H 0.40 4.03 8.26 -40.82 -0.34 3.69 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.10 2.47 6.08 -51.93 -0.32 2.15 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -32.93 384.33 -9.61 -42.54 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.07 Total: 2.96 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.09 Total: 2.43 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.24 Total: -49.04 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.97 Total: -20.75 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.93 -9.61 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482205618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.741 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds