Wall clock time and date at job start Tue Mar 31 2020 18:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47076 * 2 1 4 4 O 1.42899 * 109.47003 * 240.00478 * 2 1 3 5 5 C 1.35905 * 117.00211 * 85.60475 * 4 2 1 6 6 C 1.38731 * 120.05556 * 174.57883 * 5 4 2 7 7 C 1.38145 * 119.93955 * 179.74631 * 6 5 4 8 8 C 1.38262 * 120.05848 * 0.50044 * 7 6 5 9 9 C 1.38263 * 120.10936 * 359.77299 * 8 7 6 10 10 C 1.38141 * 120.05960 * 359.97438 * 9 8 7 11 11 C 1.50696 * 109.47356 * 120.00367 * 2 1 3 12 12 O 1.21279 * 120.00300 * 114.99731 * 11 2 1 13 13 N 1.34775 * 120.00234 * 295.00342 * 11 2 1 14 14 C 1.46493 * 120.00293 * 179.97438 * 13 11 2 15 15 C 1.53007 * 109.47194 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.55112 * 304.87404 * 15 14 13 17 17 C 1.53290 * 109.51120 * 184.74485 * 15 14 13 18 18 N 1.47157 * 108.38289 * 187.77036 * 17 15 14 19 19 C 1.36935 * 120.98343 * 230.51136 * 18 17 15 20 20 H 1.07998 * 119.99635 * 25.95490 * 19 18 17 21 21 C 1.38820 * 120.00076 * 205.94981 * 19 18 17 22 22 N 1.31615 * 119.99647 * 15.71699 * 21 19 18 23 23 Si 1.86800 * 119.99864 * 195.71706 * 21 19 18 24 24 H 1.48497 * 109.47203 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46926 * 120.00248 * 23 21 19 26 26 H 1.48496 * 109.46729 * 240.00194 * 23 21 19 27 27 C 1.47152 * 118.03176 * 50.54030 * 18 17 15 28 28 C 1.53292 * 108.38282 * 309.45917 * 27 18 17 29 29 O 1.42958 * 109.22347 * 52.30674 * 28 27 18 30 30 H 1.08999 * 109.46913 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47165 * 299.99527 * 1 2 3 32 32 H 1.09007 * 109.46876 * 59.99534 * 1 2 3 33 33 H 1.08000 * 120.03164 * 359.97438 * 6 5 4 34 34 H 1.08005 * 119.97326 * 180.27408 * 7 6 5 35 35 H 1.07997 * 119.94695 * 179.74877 * 8 7 6 36 36 H 1.08004 * 119.97170 * 179.97438 * 9 8 7 37 37 H 1.08000 * 120.03364 * 180.02562 * 10 9 8 38 38 H 0.97009 * 119.99412 * 359.97438 * 13 11 2 39 39 H 1.09001 * 109.47200 * 59.99958 * 14 13 11 40 40 H 1.09001 * 109.47113 * 299.99433 * 14 13 11 41 41 H 1.09003 * 109.68595 * 307.49545 * 17 15 14 42 42 H 1.09007 * 109.68560 * 68.05234 * 17 15 14 43 43 H 0.96997 * 119.99528 * 179.97438 * 22 21 19 44 44 H 1.09007 * 109.67970 * 189.74008 * 27 18 17 45 45 H 1.08998 * 109.71662 * 69.20385 * 27 18 17 46 46 H 1.09002 * 109.51759 * 292.37791 * 28 27 18 47 47 H 1.08999 * 109.51144 * 172.22994 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.1245 0.0658 -2.3010 6 6 2.6858 -0.4936 -3.4398 7 6 2.7999 0.2585 -4.5929 8 6 2.3649 1.5708 -4.6098 9 6 1.8103 2.1323 -3.4745 10 6 1.6891 1.3829 -2.3204 11 6 2.0324 -0.7105 1.2304 12 8 2.6530 -1.7467 1.1214 13 7 1.7919 -0.1944 2.4520 14 6 2.2798 -0.8853 3.6480 15 6 1.8756 -0.0948 4.8942 16 1 2.2373 0.9299 4.8094 17 6 2.4857 -0.7520 6.1375 18 7 1.9336 -0.0902 7.3303 19 6 2.7553 0.3765 8.3214 20 1 3.7738 0.6533 8.0926 21 6 2.2791 0.4938 9.6200 22 7 1.1677 -0.1175 9.9711 23 14 3.2158 1.5193 10.8692 24 1 4.4235 2.0986 10.2283 25 1 2.3441 2.6153 11.3632 26 1 3.6239 0.6594 12.0091 27 6 0.4725 0.0546 7.4269 28 6 -0.0395 0.6725 6.1207 29 8 0.4512 -0.0899 5.0154 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.0298 -1.5172 -3.4258 34 1 3.2328 -0.1779 -5.4810 35 1 2.4587 2.1583 -5.5111 36 1 1.4716 3.1577 -3.4900 37 1 1.2555 1.8218 -1.4339 38 1 1.2958 0.6346 2.5391 39 1 3.3661 -0.9639 3.6046 40 1 1.8448 -1.8837 3.6938 41 1 2.2314 -1.8118 6.1549 42 1 3.5692 -0.6342 6.1208 43 1 0.8351 -0.0358 10.8786 44 1 0.2227 0.7066 8.2640 45 1 0.0149 -0.9236 7.5744 46 1 0.3152 1.7000 6.0404 47 1 -1.1294 0.6614 6.1154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482205618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:57 Heat of formation + Delta-G solvation = -84.420001 kcal Electronic energy + Delta-G solvation = -28287.264832 eV Core-core repulsion = 24242.576283 eV Total energy + Delta-G solvation = -4044.688549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.69587 -40.60191 -39.91685 -38.26645 -36.53525 -35.85042 -33.71546 -33.18997 -32.14604 -31.62272 -30.55747 -29.22875 -27.34970 -25.61621 -24.94014 -23.85382 -23.42971 -22.84688 -21.75452 -21.01722 -19.42780 -18.95804 -18.48100 -17.53553 -17.36740 -16.98438 -16.79008 -16.66541 -16.32262 -16.14249 -15.65078 -15.56524 -15.43974 -15.19070 -14.99068 -14.60441 -14.49870 -14.35490 -14.09915 -13.90074 -13.46584 -13.30436 -13.23935 -13.01479 -12.85149 -12.73097 -12.50244 -12.43611 -12.16907 -12.08987 -12.05753 -11.88150 -11.73254 -11.34839 -10.94591 -10.80026 -10.55533 -10.22973 -9.93060 -9.18004 -8.76584 -7.91718 -5.39587 0.40825 0.48940 1.42460 1.45643 1.47475 1.53028 1.58216 2.44705 2.55306 2.76851 2.86240 3.23519 3.44946 3.50027 3.69588 3.84792 3.94522 3.96887 4.02070 4.05686 4.24457 4.30698 4.41528 4.47854 4.51517 4.53142 4.60602 4.64043 4.65534 4.71380 4.75536 4.78103 4.90460 5.04997 5.09468 5.11930 5.24984 5.26904 5.37089 5.49930 5.55847 5.62118 5.62615 5.85143 6.24748 6.31535 6.33807 6.48519 7.05694 7.08365 7.73554 8.26456 9.14122 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027528 B = 0.001931 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.898233 B =14499.054641 C =14553.910170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 H 0.127 0.873 4 O -0.316 6.316 5 C 0.106 3.894 6 C -0.174 4.174 7 C -0.083 4.083 8 C -0.162 4.162 9 C -0.083 4.083 10 C -0.217 4.217 11 C 0.514 3.486 12 O -0.572 6.572 13 N -0.701 5.701 14 C 0.141 3.859 15 C 0.081 3.919 16 H 0.074 0.926 17 C 0.115 3.885 18 N -0.613 5.613 19 C -0.264 4.264 20 H 0.074 0.926 21 C -0.052 4.052 22 N -0.937 5.937 23 Si 0.972 3.028 24 H -0.265 1.265 25 H -0.287 1.287 26 H -0.295 1.295 27 C 0.140 3.860 28 C 0.055 3.945 29 O -0.388 6.388 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.418 0.582 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.016 0.984 42 H 0.072 0.928 43 H 0.251 0.749 44 H 0.070 0.930 45 H -0.003 1.003 46 H 0.054 0.946 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 8.167 -27.440 28.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.012 3.988 3 H 0.144 0.856 4 O -0.229 6.229 5 C 0.061 3.939 6 C -0.193 4.193 7 C -0.101 4.101 8 C -0.180 4.180 9 C -0.101 4.101 10 C -0.235 4.235 11 C 0.300 3.700 12 O -0.450 6.450 13 N -0.354 5.354 14 C 0.017 3.983 15 C 0.021 3.979 16 H 0.092 0.908 17 C -0.011 4.011 18 N -0.337 5.337 19 C -0.393 4.393 20 H 0.091 0.909 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.800 3.200 24 H -0.189 1.189 25 H -0.214 1.214 26 H -0.222 1.222 27 C 0.015 3.985 28 C -0.023 4.023 29 O -0.307 6.307 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.141 0.859 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.165 0.835 38 H 0.256 0.744 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.015 0.985 46 H 0.072 0.928 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.684 7.122 -27.438 28.397 hybrid contribution 0.242 0.347 1.691 1.743 sum -1.441 7.468 -25.747 26.847 Atomic orbital electron populations 1.22329 0.90576 1.04079 1.05688 1.22295 0.97060 0.97347 0.82123 0.85615 1.86176 1.81654 1.38173 1.16917 1.19375 0.96714 0.91378 0.86447 1.20697 1.04580 1.01773 0.92242 1.21282 0.97444 0.94345 0.97057 1.21465 1.01190 0.95645 0.99748 1.21349 0.96368 1.00564 0.91798 1.21559 1.06996 0.93347 1.01592 1.20629 0.79261 0.85029 0.85089 1.90724 1.41887 1.25294 1.87114 1.45636 1.57339 1.28209 1.04252 1.21219 0.99679 0.95802 0.81627 1.22623 0.82340 0.99365 0.93539 0.90781 1.21612 0.98062 0.94514 0.86959 1.44357 1.02455 1.67338 1.19562 1.19602 0.96165 1.35840 0.87719 0.90863 1.25840 0.99207 1.01017 0.98697 1.70184 1.24893 1.44898 1.18332 0.85136 0.78285 0.78000 0.78583 1.18900 1.21387 1.22203 1.21361 0.83257 0.97566 0.96349 1.23160 0.99306 0.93990 0.85816 1.87802 1.20513 1.73564 1.48862 0.92305 0.87937 0.89036 0.85859 0.83286 0.83444 0.83119 0.83454 0.74448 0.89344 0.91934 0.96574 0.90950 0.93951 0.91185 0.98511 0.92811 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.15 71.98 0.66 -1.77 16 2 C 0.07 1.36 2.63 29.85 0.08 1.44 16 3 H 0.13 1.65 6.25 -2.38 -0.01 1.63 16 4 O -0.32 -7.95 9.33 -73.49 -0.69 -8.63 16 5 C 0.11 2.19 6.61 22.51 0.15 2.34 16 6 C -0.17 -3.39 9.99 22.37 0.22 -3.17 16 7 C -0.08 -1.17 10.04 22.25 0.22 -0.95 16 8 C -0.16 -1.90 10.04 22.28 0.22 -1.68 16 9 C -0.08 -0.99 10.04 22.25 0.22 -0.76 16 10 C -0.22 -3.24 8.28 22.37 0.19 -3.05 16 11 C 0.51 13.49 7.18 87.66 0.63 14.12 16 12 O -0.57 -20.83 16.51 15.96 0.26 -20.56 16 13 N -0.70 -15.89 5.46 -463.07 -2.53 -18.42 16 14 C 0.14 3.91 5.35 86.38 0.46 4.37 16 15 C 0.08 2.54 2.81 30.69 0.09 2.63 16 16 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 17 C 0.11 4.61 6.02 86.35 0.52 5.13 16 18 N -0.61 -30.00 3.05 -697.52 -2.13 -32.13 16 19 C -0.26 -14.06 9.66 84.04 0.81 -13.24 16 20 H 0.07 3.77 7.87 -2.91 -0.02 3.75 16 21 C -0.05 -2.85 4.98 84.86 0.42 -2.43 16 22 N -0.94 -54.34 11.04 21.65 0.24 -54.10 16 23 Si 0.97 43.60 29.58 68.60 2.03 45.63 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 27 C 0.14 6.57 5.44 86.35 0.47 7.04 16 28 C 0.05 1.91 6.98 72.08 0.50 2.41 16 29 O -0.39 -12.92 10.33 -148.98 -1.54 -14.46 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 1.05 7.92 -2.39 -0.02 1.03 16 32 H 0.09 1.02 7.01 -2.38 -0.02 1.01 16 33 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 34 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 36 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 37 H 0.15 1.53 5.47 -2.91 -0.02 1.51 16 38 H 0.42 7.04 8.26 -92.70 -0.77 6.27 16 39 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 2.74 7.96 -2.38 -0.02 2.73 16 43 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 44 H 0.07 3.65 6.08 -2.38 -0.01 3.64 16 45 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -73.83 384.33 1.73 -72.10 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.21 Total: 18.14 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 5.87 Total: 12.43 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -4.42 Total: -104.65 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -1.96 Total: -43.66 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -73.83 1.73 -72.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482205618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.319 kcal (2) G-P(sol) polarization free energy of solvation -73.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds