Wall clock time and date at job start Tue Mar 31 2020 18:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47081 * 2 1 4 4 O 1.42897 * 109.47565 * 120.00137 * 2 1 3 5 5 C 1.35902 * 117.00227 * 275.97021 * 4 2 1 6 6 C 1.38733 * 120.05231 * 0.41735 * 5 4 2 7 7 C 1.38142 * 119.94401 * 179.74525 * 6 5 4 8 8 C 1.38271 * 120.05184 * 0.50480 * 7 6 5 9 9 C 1.38268 * 120.11245 * 359.76820 * 8 7 6 10 10 C 1.38143 * 120.05705 * 359.97438 * 9 8 7 11 11 C 1.50705 * 109.47036 * 240.00472 * 2 1 3 12 12 O 1.21287 * 119.99716 * 244.99821 * 11 2 1 13 13 N 1.34776 * 120.00096 * 64.99524 * 11 2 1 14 14 C 1.46502 * 119.99523 * 180.02562 * 13 11 2 15 15 C 1.53008 * 109.46741 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.50821 * 60.09947 * 15 14 13 17 17 C 1.53295 * 109.51214 * 180.25154 * 15 14 13 18 18 N 1.47155 * 108.38220 * 172.22489 * 17 15 14 19 19 C 1.36934 * 120.98102 * 129.44894 * 18 17 15 20 20 H 1.08002 * 119.99690 * 332.87047 * 19 18 17 21 21 C 1.38807 * 120.00277 * 152.87854 * 19 18 17 22 22 N 1.31621 * 119.99975 * 161.97118 * 21 19 18 23 23 Si 1.86800 * 120.00019 * 341.96978 * 21 19 18 24 24 H 1.48507 * 109.47015 * 86.65331 * 23 21 19 25 25 H 1.48490 * 109.47358 * 206.65504 * 23 21 19 26 26 H 1.48498 * 109.47149 * 326.66000 * 23 21 19 27 27 C 1.47153 * 118.03587 * 309.46388 * 18 17 15 28 28 C 1.53292 * 108.38354 * 50.53875 * 27 18 17 29 29 O 1.42965 * 109.22456 * 307.69326 * 28 27 18 30 30 H 1.08996 * 109.47503 * 60.00162 * 1 2 3 31 31 H 1.09007 * 109.46903 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46785 * 299.99406 * 1 2 3 33 33 H 1.08001 * 120.02595 * 359.97438 * 6 5 4 34 34 H 1.08002 * 119.97440 * 180.22688 * 7 6 5 35 35 H 1.08002 * 119.94290 * 179.74815 * 8 7 6 36 36 H 1.07997 * 119.96938 * 179.97438 * 9 8 7 37 37 H 1.07999 * 120.02847 * 179.97438 * 10 9 8 38 38 H 0.96996 * 119.99796 * 0.02562 * 13 11 2 39 39 H 1.09004 * 109.47297 * 60.00350 * 14 13 11 40 40 H 1.08996 * 109.47380 * 299.99664 * 14 13 11 41 41 H 1.08994 * 109.68243 * 291.95298 * 17 15 14 42 42 H 1.09007 * 109.67701 * 52.50457 * 17 15 14 43 43 H 0.97002 * 119.99787 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.68168 * 290.81533 * 27 18 17 45 45 H 1.09000 * 109.71111 * 170.27952 * 27 18 17 46 46 H 1.08998 * 109.51742 * 187.77247 * 28 27 18 47 47 H 1.09001 * 109.55672 * 67.64612 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0933 0.0574 2.3090 6 6 1.7194 1.3934 2.3090 7 6 1.8038 2.1331 3.4727 8 6 2.2703 1.5456 4.6343 9 6 2.6489 0.2158 4.6355 10 6 2.5614 -0.5295 3.4756 11 6 2.0323 -0.7103 -1.2306 12 8 2.6529 -1.7466 -1.1216 13 7 1.7917 -0.1941 -2.4521 14 6 2.2796 -0.8850 -3.6483 15 6 1.8754 -0.0944 -4.8943 16 1 2.3119 0.9035 -4.8498 17 6 2.3800 -0.8197 -6.1470 18 7 1.8217 -0.1458 -7.3300 19 6 2.6280 0.2405 -8.3672 20 1 3.6683 0.4676 -8.1868 21 6 2.1082 0.3403 -9.6504 22 7 2.7491 1.0330 -10.5680 23 14 0.4993 -0.5084 -10.0751 24 1 -0.6367 0.3862 -9.7365 25 1 0.4706 -0.8169 -11.5273 26 1 0.3848 -1.7691 -9.2988 27 6 0.3715 0.1010 -7.3654 28 6 -0.0352 0.7815 -6.0534 29 8 0.4507 0.0097 -4.9524 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.3592 1.8538 1.4009 34 1 1.5094 3.1722 3.4741 35 1 2.3393 2.1266 5.5421 36 1 3.0133 -0.2406 5.5439 37 1 2.8576 -1.5681 3.4770 38 1 1.2956 0.6349 -2.5391 39 1 1.8446 -1.8834 -3.6941 40 1 3.3659 -0.9635 -3.6049 41 1 3.4687 -0.7794 -6.1810 42 1 2.0511 -1.8588 -6.1270 43 1 2.3860 1.1025 -11.4648 44 1 -0.1596 -0.8453 -7.4680 45 1 0.1295 0.7508 -8.2064 46 1 -1.1218 0.8485 -5.9994 47 1 0.3936 1.7828 -6.0135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482205623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:01 Heat of formation + Delta-G solvation = -56.240019 kcal Electronic energy + Delta-G solvation = -28381.016957 eV Core-core repulsion = 24337.550383 eV Total energy + Delta-G solvation = -4043.466573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.90105 -39.64483 -38.77965 -37.55288 -35.16819 -34.52823 -32.80472 -31.69884 -31.31454 -30.91085 -29.93229 -27.85762 -26.16364 -24.78160 -23.24924 -23.15556 -22.56293 -21.84338 -20.66607 -19.90334 -18.76242 -17.72911 -16.98730 -16.54550 -16.38140 -16.03096 -15.95601 -15.60264 -15.55221 -14.82244 -14.71428 -14.40878 -14.29939 -14.09842 -13.80549 -13.65860 -13.54487 -13.43884 -13.07598 -12.73896 -12.56253 -12.43304 -12.17590 -11.99769 -11.92316 -11.77863 -11.44511 -11.31806 -11.10138 -10.93313 -10.48796 -10.36775 -9.95346 -9.85567 -9.60441 -9.49691 -9.35770 -9.16903 -8.66051 -8.53267 -7.10884 -6.04835 -3.44784 0.97883 1.10116 2.34265 2.41951 3.20673 3.35044 3.41072 3.43454 3.44785 3.93551 4.25576 4.41108 4.41915 4.50710 4.52112 4.58718 4.67431 4.78828 5.00527 5.02999 5.11788 5.19296 5.24279 5.25418 5.28549 5.33045 5.50144 5.64224 5.65174 5.69187 5.72510 5.79728 5.90824 5.95840 6.04207 6.04916 6.11062 6.18417 6.29072 6.36700 6.40819 6.42840 6.61967 7.03487 7.34310 7.48490 7.78123 8.03860 8.20233 8.77274 9.58131 9.93466 11.10744 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032183 B = 0.001990 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.811220 B =14067.350602 C =14191.742143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.067 3.933 3 H 0.099 0.901 4 O -0.284 6.284 5 C 0.133 3.867 6 C -0.214 4.214 7 C -0.079 4.079 8 C -0.162 4.162 9 C -0.080 4.080 10 C -0.151 4.151 11 C 0.516 3.484 12 O -0.520 6.520 13 N -0.714 5.714 14 C 0.132 3.868 15 C 0.062 3.938 16 H 0.065 0.935 17 C 0.125 3.875 18 N -0.607 5.607 19 C -0.264 4.264 20 H 0.089 0.911 21 C 0.024 3.976 22 N -0.907 5.907 23 Si 0.889 3.111 24 H -0.286 1.286 25 H -0.302 1.302 26 H -0.272 1.272 27 C 0.085 3.915 28 C 0.050 3.950 29 O -0.386 6.386 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.404 0.596 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.264 0.736 44 H 0.034 0.966 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.122 2.810 27.452 28.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.007 3.993 3 H 0.116 0.884 4 O -0.197 6.197 5 C 0.087 3.913 6 C -0.233 4.233 7 C -0.097 4.097 8 C -0.180 4.180 9 C -0.098 4.098 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.395 6.395 13 N -0.368 5.368 14 C 0.008 3.992 15 C 0.003 3.997 16 H 0.083 0.917 17 C -0.002 4.002 18 N -0.332 5.332 19 C -0.392 4.392 20 H 0.106 0.894 21 C -0.176 4.176 22 N -0.550 5.550 23 Si 0.720 3.280 24 H -0.214 1.214 25 H -0.230 1.230 26 H -0.198 1.198 27 C -0.040 4.040 28 C -0.028 4.028 29 O -0.306 6.306 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.239 0.761 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.693 1.796 27.404 27.861 hybrid contribution -1.114 0.356 -0.813 1.424 sum -5.807 2.151 26.592 27.303 Atomic orbital electron populations 1.22322 0.92344 1.04645 1.03967 1.22205 0.95920 0.97045 0.84163 0.88373 1.86227 1.80642 1.37396 1.15403 1.19106 0.95367 0.90259 0.86558 1.21315 1.08020 0.93819 1.00099 1.20962 0.97087 0.99553 0.92133 1.21083 1.02878 0.95524 0.98528 1.20990 0.97609 0.93992 0.97220 1.20490 1.04503 1.01315 0.90625 1.19982 0.80312 0.85635 0.84048 1.90753 1.39431 1.22912 1.86364 1.45767 1.57804 1.28099 1.05087 1.21466 0.99618 0.96591 0.81487 1.22867 0.82703 0.99342 0.94816 0.91664 1.21477 0.98522 0.94487 0.85739 1.44342 1.02514 1.67749 1.18592 1.18911 0.94894 1.40098 0.85256 0.89362 1.25276 0.98026 0.98759 0.95508 1.69798 1.40449 1.40605 1.04160 0.86952 0.83727 0.80915 0.76393 1.21425 1.23014 1.19757 1.22106 0.86069 0.98658 0.97213 1.23055 0.98260 0.94180 0.87264 1.87799 1.20444 1.74037 1.48271 0.89884 0.90536 0.90680 0.85227 0.85738 0.85933 0.85330 0.85018 0.76090 0.90414 0.89704 0.90669 0.94647 0.92580 0.94780 0.89773 0.89529 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 9.17 37.15 0.34 -1.02 16 2 C 0.07 0.66 2.64 -27.88 -0.07 0.59 16 3 H 0.10 0.74 6.11 -51.93 -0.32 0.42 16 4 O -0.28 -3.48 9.34 -39.29 -0.37 -3.85 16 5 C 0.13 1.38 6.58 -39.22 -0.26 1.12 16 6 C -0.21 -1.80 8.29 -39.43 -0.33 -2.13 16 7 C -0.08 -0.58 10.04 -39.60 -0.40 -0.98 16 8 C -0.16 -1.14 10.04 -39.56 -0.40 -1.54 16 9 C -0.08 -0.60 10.04 -39.61 -0.40 -1.00 16 10 C -0.15 -1.43 9.99 -39.43 -0.39 -1.82 16 11 C 0.52 6.67 7.18 -10.98 -0.08 6.60 16 12 O -0.52 -9.00 16.51 -14.31 -0.24 -9.24 16 13 N -0.71 -8.21 5.41 -60.29 -0.33 -8.54 16 14 C 0.13 1.76 5.37 -4.04 -0.02 1.74 16 15 C 0.06 0.95 2.87 -26.57 -0.08 0.88 16 16 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 17 C 0.12 2.33 6.02 -3.53 -0.02 2.31 16 18 N -0.61 -13.92 2.83 -171.83 -0.49 -14.40 16 19 C -0.26 -7.14 10.11 -15.06 -0.15 -7.29 16 20 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 21 C 0.02 0.66 5.29 -17.43 -0.09 0.57 16 22 N -0.91 -27.15 13.97 55.49 0.78 -26.37 16 23 Si 0.89 21.91 24.24 -169.99 -4.12 17.79 16 24 H -0.29 -6.65 6.36 56.52 0.36 -6.29 16 25 H -0.30 -7.60 7.11 56.52 0.40 -7.19 16 26 H -0.27 -6.71 6.75 56.52 0.38 -6.33 16 27 C 0.08 1.77 4.37 -3.53 -0.02 1.76 16 28 C 0.05 0.83 6.98 37.31 0.26 1.09 16 29 O -0.39 -6.16 10.13 -35.23 -0.36 -6.52 16 30 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 31 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.07 0.50 7.17 -51.93 -0.37 0.13 16 33 H 0.13 0.86 5.58 -52.49 -0.29 0.56 16 34 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.40 3.75 8.13 -40.82 -0.33 3.42 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.36 7.96 -51.93 -0.41 0.95 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 44 H 0.03 0.73 6.95 -51.93 -0.36 0.37 16 45 H 0.08 1.89 4.45 -51.93 -0.23 1.66 16 46 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -33.88 377.50 -8.53 -42.41 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.00 Total: 2.15 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.10 Total: 0.88 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.04 Total: -49.31 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.96 Total: -19.60 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.12 Total: 17.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.88 -8.53 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482205623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.828 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds