Wall clock time and date at job start Tue Mar 31 2020 18:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47081 * 2 1 4 4 O 1.42897 * 109.47565 * 120.00137 * 2 1 3 5 5 C 1.35902 * 117.00227 * 275.97021 * 4 2 1 6 6 C 1.38733 * 120.05231 * 0.41735 * 5 4 2 7 7 C 1.38142 * 119.94401 * 179.74525 * 6 5 4 8 8 C 1.38271 * 120.05184 * 0.50480 * 7 6 5 9 9 C 1.38268 * 120.11245 * 359.76820 * 8 7 6 10 10 C 1.38143 * 120.05705 * 359.97438 * 9 8 7 11 11 C 1.50705 * 109.47036 * 240.00472 * 2 1 3 12 12 O 1.21287 * 119.99716 * 244.99821 * 11 2 1 13 13 N 1.34776 * 120.00096 * 64.99524 * 11 2 1 14 14 C 1.46502 * 119.99523 * 180.02562 * 13 11 2 15 15 C 1.53008 * 109.46741 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.50821 * 60.09947 * 15 14 13 17 17 C 1.53295 * 109.51214 * 180.25154 * 15 14 13 18 18 N 1.47155 * 108.38220 * 172.22489 * 17 15 14 19 19 C 1.36934 * 120.98102 * 129.44894 * 18 17 15 20 20 H 1.08002 * 119.99690 * 332.87047 * 19 18 17 21 21 C 1.38807 * 120.00277 * 152.87854 * 19 18 17 22 22 N 1.31621 * 119.99975 * 161.97118 * 21 19 18 23 23 Si 1.86800 * 120.00019 * 341.96978 * 21 19 18 24 24 H 1.48507 * 109.47015 * 86.65331 * 23 21 19 25 25 H 1.48490 * 109.47358 * 206.65504 * 23 21 19 26 26 H 1.48498 * 109.47149 * 326.66000 * 23 21 19 27 27 C 1.47153 * 118.03587 * 309.46388 * 18 17 15 28 28 C 1.53292 * 108.38354 * 50.53875 * 27 18 17 29 29 O 1.42965 * 109.22456 * 307.69326 * 28 27 18 30 30 H 1.08996 * 109.47503 * 60.00162 * 1 2 3 31 31 H 1.09007 * 109.46903 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46785 * 299.99406 * 1 2 3 33 33 H 1.08001 * 120.02595 * 359.97438 * 6 5 4 34 34 H 1.08002 * 119.97440 * 180.22688 * 7 6 5 35 35 H 1.08002 * 119.94290 * 179.74815 * 8 7 6 36 36 H 1.07997 * 119.96938 * 179.97438 * 9 8 7 37 37 H 1.07999 * 120.02847 * 179.97438 * 10 9 8 38 38 H 0.96996 * 119.99796 * 0.02562 * 13 11 2 39 39 H 1.09004 * 109.47297 * 60.00350 * 14 13 11 40 40 H 1.08996 * 109.47380 * 299.99664 * 14 13 11 41 41 H 1.08994 * 109.68243 * 291.95298 * 17 15 14 42 42 H 1.09007 * 109.67701 * 52.50457 * 17 15 14 43 43 H 0.97002 * 119.99787 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.68168 * 290.81533 * 27 18 17 45 45 H 1.09000 * 109.71111 * 170.27952 * 27 18 17 46 46 H 1.08998 * 109.51742 * 187.77247 * 28 27 18 47 47 H 1.09001 * 109.55672 * 67.64612 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0933 0.0574 2.3090 6 6 1.7194 1.3934 2.3090 7 6 1.8038 2.1331 3.4727 8 6 2.2703 1.5456 4.6343 9 6 2.6489 0.2158 4.6355 10 6 2.5614 -0.5295 3.4756 11 6 2.0323 -0.7103 -1.2306 12 8 2.6529 -1.7466 -1.1216 13 7 1.7917 -0.1941 -2.4521 14 6 2.2796 -0.8850 -3.6483 15 6 1.8754 -0.0944 -4.8943 16 1 2.3119 0.9035 -4.8498 17 6 2.3800 -0.8197 -6.1470 18 7 1.8217 -0.1458 -7.3300 19 6 2.6280 0.2405 -8.3672 20 1 3.6683 0.4676 -8.1868 21 6 2.1082 0.3403 -9.6504 22 7 2.7491 1.0330 -10.5680 23 14 0.4993 -0.5084 -10.0751 24 1 -0.6367 0.3862 -9.7365 25 1 0.4706 -0.8169 -11.5273 26 1 0.3848 -1.7691 -9.2988 27 6 0.3715 0.1010 -7.3654 28 6 -0.0352 0.7815 -6.0534 29 8 0.4507 0.0097 -4.9524 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.3592 1.8538 1.4009 34 1 1.5094 3.1722 3.4741 35 1 2.3393 2.1266 5.5421 36 1 3.0133 -0.2406 5.5439 37 1 2.8576 -1.5681 3.4770 38 1 1.2956 0.6349 -2.5391 39 1 1.8446 -1.8834 -3.6941 40 1 3.3659 -0.9635 -3.6049 41 1 3.4687 -0.7794 -6.1810 42 1 2.0511 -1.8588 -6.1270 43 1 2.3860 1.1025 -11.4648 44 1 -0.1596 -0.8453 -7.4680 45 1 0.1295 0.7508 -8.2064 46 1 -1.1218 0.8485 -5.9994 47 1 0.3936 1.7828 -6.0135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482205623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:00 Heat of formation + Delta-G solvation = -79.633085 kcal Electronic energy + Delta-G solvation = -28382.031356 eV Core-core repulsion = 24337.550383 eV Total energy + Delta-G solvation = -4044.480973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.70354 -40.67019 -40.02917 -38.27461 -36.68060 -35.87508 -33.77765 -33.55225 -32.37188 -31.66932 -30.56540 -29.37793 -27.60221 -25.65999 -24.84933 -23.97373 -23.50622 -22.84544 -21.92847 -21.11234 -19.44022 -19.02281 -18.54495 -17.72010 -17.41743 -17.28740 -16.86130 -16.67877 -16.46164 -15.92568 -15.83464 -15.69235 -15.58721 -15.30932 -15.21032 -14.77841 -14.37323 -14.24569 -14.09975 -14.04251 -13.66820 -13.54406 -13.41603 -13.31369 -12.98093 -12.84537 -12.44988 -12.39108 -12.35094 -12.10914 -12.06395 -11.71425 -11.59864 -11.38431 -11.16210 -10.95052 -10.51190 -10.22751 -9.93523 -9.17831 -8.98935 -8.20434 -5.56443 0.40513 0.49161 1.24900 1.40084 1.42398 1.47878 1.51402 2.36571 2.50302 2.68379 2.85823 3.00417 3.18452 3.47797 3.68280 3.83791 3.88050 3.94241 3.98283 4.02922 4.14603 4.26450 4.30687 4.33341 4.41354 4.48889 4.52554 4.53915 4.62698 4.65651 4.68467 4.76164 4.77998 4.87551 4.91763 5.09225 5.11154 5.12011 5.25532 5.36530 5.49641 5.62417 5.76666 5.84713 6.06840 6.16691 6.32155 6.48092 6.80055 7.08183 7.51862 7.91947 8.98838 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032183 B = 0.001990 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.811220 B =14067.350602 C =14191.742143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.070 3.930 3 H 0.126 0.874 4 O -0.315 6.315 5 C 0.107 3.893 6 C -0.217 4.217 7 C -0.083 4.083 8 C -0.163 4.163 9 C -0.083 4.083 10 C -0.174 4.174 11 C 0.515 3.485 12 O -0.571 6.571 13 N -0.701 5.701 14 C 0.140 3.860 15 C 0.079 3.921 16 H 0.073 0.927 17 C 0.117 3.883 18 N -0.622 5.622 19 C -0.251 4.251 20 H 0.057 0.943 21 C -0.034 4.034 22 N -0.955 5.955 23 Si 0.950 3.050 24 H -0.261 1.261 25 H -0.312 1.312 26 H -0.273 1.273 27 C 0.075 3.925 28 C 0.060 3.940 29 O -0.381 6.381 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.124 0.876 38 H 0.419 0.581 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.263 0.737 44 H 0.034 0.966 45 H 0.068 0.932 46 H 0.123 0.877 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.295 4.323 29.887 31.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.010 3.990 3 H 0.143 0.857 4 O -0.229 6.229 5 C 0.062 3.938 6 C -0.236 4.236 7 C -0.101 4.101 8 C -0.181 4.181 9 C -0.101 4.101 10 C -0.193 4.193 11 C 0.301 3.699 12 O -0.450 6.450 13 N -0.354 5.354 14 C 0.016 3.984 15 C 0.019 3.981 16 H 0.091 0.909 17 C -0.009 4.009 18 N -0.348 5.348 19 C -0.381 4.381 20 H 0.075 0.925 21 C -0.229 4.229 22 N -0.601 5.601 23 Si 0.780 3.220 24 H -0.187 1.187 25 H -0.241 1.241 26 H -0.198 1.198 27 C -0.049 4.049 28 C -0.018 4.018 29 O -0.299 6.299 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.142 0.858 38 H 0.256 0.744 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.086 0.914 46 H 0.141 0.859 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.911 3.335 29.891 30.860 hybrid contribution -0.344 -0.109 -1.464 1.508 sum -7.255 3.226 28.426 29.514 Atomic orbital electron populations 1.22315 0.90549 1.04075 1.05665 1.22300 0.97081 0.97399 0.82196 0.85699 1.86177 1.81424 1.38890 1.16412 1.19361 0.96976 0.91303 0.86173 1.21541 1.07685 0.92977 1.01372 1.21346 0.96301 1.00721 0.91689 1.21466 1.01708 0.95384 0.99557 1.21282 0.97164 0.94408 0.97247 1.20685 1.05561 1.01516 0.91538 1.20584 0.79251 0.85009 0.85071 1.90730 1.41839 1.25296 1.87105 1.45599 1.57349 1.28266 1.04209 1.21247 0.99778 0.95912 0.81483 1.22639 0.82491 0.99293 0.93666 0.90944 1.21658 0.98640 0.94734 0.85841 1.44458 1.03299 1.68446 1.18606 1.18854 0.94254 1.38392 0.86561 0.92477 1.25904 1.01722 0.99753 0.95535 1.69929 1.42775 1.42804 1.04578 0.85947 0.80896 0.79968 0.75226 1.18702 1.24070 1.19781 1.22230 0.84590 0.98737 0.99387 1.23020 1.00403 0.93622 0.84735 1.87826 1.20431 1.73979 1.47713 0.87850 0.92249 0.89220 0.83492 0.83162 0.83481 0.83289 0.85808 0.74387 0.91394 0.89439 0.90872 0.94531 0.92802 0.94839 0.91436 0.85921 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.17 71.98 0.66 -1.58 16 2 C 0.07 1.27 2.64 29.85 0.08 1.35 16 3 H 0.13 1.55 6.11 -2.39 -0.01 1.53 16 4 O -0.32 -7.71 9.34 -73.46 -0.69 -8.39 16 5 C 0.11 2.16 6.58 22.51 0.15 2.30 16 6 C -0.22 -3.17 8.29 22.37 0.19 -2.98 16 7 C -0.08 -0.96 10.04 22.25 0.22 -0.74 16 8 C -0.16 -1.87 10.04 22.28 0.22 -1.64 16 9 C -0.08 -1.14 10.04 22.25 0.22 -0.91 16 10 C -0.17 -3.30 9.99 22.36 0.22 -3.08 16 11 C 0.51 12.82 7.18 87.66 0.63 13.45 16 12 O -0.57 -20.04 16.51 15.94 0.26 -19.78 16 13 N -0.70 -14.67 5.41 -463.03 -2.51 -17.17 16 14 C 0.14 3.54 5.37 86.38 0.46 4.00 16 15 C 0.08 2.24 2.87 30.70 0.09 2.32 16 16 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 17 C 0.12 4.29 6.02 86.35 0.52 4.81 16 18 N -0.62 -28.09 2.83 -697.54 -1.98 -30.07 16 19 C -0.25 -13.82 10.11 84.03 0.85 -12.97 16 20 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 21 C -0.03 -1.94 5.29 84.86 0.45 -1.49 16 22 N -0.96 -58.63 13.97 21.65 0.30 -58.33 16 23 Si 0.95 45.41 24.24 68.60 1.66 47.07 16 24 H -0.26 -11.28 6.36 99.48 0.63 -10.65 16 25 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 26 H -0.27 -12.87 6.75 99.48 0.67 -12.20 16 27 C 0.08 2.98 4.37 86.35 0.38 3.36 16 28 C 0.06 1.76 6.98 72.08 0.50 2.27 16 29 O -0.38 -10.85 10.13 -148.98 -1.51 -12.36 16 30 H 0.10 0.92 7.92 -2.39 -0.02 0.91 16 31 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.09 0.95 7.17 -2.39 -0.02 0.93 16 33 H 0.15 1.47 5.58 -2.91 -0.02 1.45 16 34 H 0.15 0.92 8.06 -2.91 -0.02 0.89 16 35 H 0.15 0.92 8.06 -2.91 -0.02 0.89 16 36 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.42 6.39 8.13 -92.71 -0.75 5.63 16 39 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 42 H 0.04 1.34 8.14 -2.38 -0.02 1.33 16 43 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.03 1.34 6.95 -2.39 -0.02 1.32 16 45 H 0.07 2.90 4.45 -2.39 -0.01 2.89 16 46 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 47 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -76.02 377.50 1.52 -74.51 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.12 Total: 16.06 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 5.85 Total: 8.47 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -4.18 Total: -105.57 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.93 Total: -40.53 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.66 Total: 47.07 kcal Total: -76.02 1.52 -74.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482205623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.127 kcal (2) G-P(sol) polarization free energy of solvation -76.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds