Wall clock time and date at job start Tue Mar 31 2020 18:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47214 * 2 1 4 4 O 1.42902 * 109.46646 * 119.99918 * 2 1 3 5 5 C 1.35899 * 116.99898 * 276.60997 * 4 2 1 6 6 C 1.38734 * 120.05890 * 356.02593 * 5 4 2 7 7 C 1.38141 * 119.94610 * 179.74964 * 6 5 4 8 8 C 1.38266 * 120.05847 * 0.24482 * 7 6 5 9 9 C 1.38270 * 120.10965 * 0.02562 * 8 7 6 10 10 C 1.38141 * 120.05472 * 359.97030 * 9 8 7 11 11 C 1.50697 * 109.47398 * 239.99467 * 2 1 3 12 12 O 1.21280 * 120.00421 * 245.00271 * 11 2 1 13 13 N 1.34778 * 119.99740 * 64.99888 * 11 2 1 14 14 C 1.46494 * 120.00058 * 184.92985 * 13 11 2 15 15 C 1.53002 * 112.94758 * 294.27990 * 14 13 11 16 16 C 1.53004 * 109.46935 * 304.13625 * 15 14 13 17 17 O 1.42898 * 109.46985 * 185.00391 * 16 15 14 18 18 C 1.53950 * 113.74305 * 162.68833 * 14 13 11 19 19 N 1.47819 * 86.03640 * 222.08621 * 18 14 13 20 20 C 1.36930 * 134.45579 * 204.64194 * 19 18 14 21 21 H 1.07996 * 120.00468 * 179.86670 * 20 19 18 22 22 C 1.38823 * 119.99875 * 359.86911 * 20 19 18 23 23 N 1.31617 * 120.00011 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99744 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47402 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47429 * 119.99710 * 24 22 20 27 27 H 1.48505 * 109.46649 * 239.99773 * 24 22 20 28 28 C 1.47580 * 91.05158 * 24.54684 * 19 18 14 29 29 H 1.08998 * 109.47305 * 300.00342 * 1 2 3 30 30 H 1.09004 * 109.46872 * 60.00552 * 1 2 3 31 31 H 1.09008 * 109.47444 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.02123 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.97267 * 180.27862 * 7 6 5 34 34 H 1.08001 * 119.94552 * 180.02562 * 8 7 6 35 35 H 1.07998 * 119.96985 * 179.97438 * 9 8 7 36 36 H 1.07998 * 120.02984 * 180.02562 * 10 9 8 37 37 H 0.97006 * 120.00013 * 4.94005 * 13 11 2 38 38 H 1.09004 * 109.47146 * 64.13271 * 15 14 13 39 39 H 1.08999 * 109.46971 * 184.13759 * 15 14 13 40 40 H 1.09002 * 109.46873 * 304.99641 * 16 15 14 41 41 H 1.08999 * 109.46790 * 65.00170 * 16 15 14 42 42 H 0.96703 * 114.00124 * 180.02562 * 17 16 15 43 43 H 1.09001 * 113.76845 * 336.34798 * 18 14 13 44 44 H 1.08993 * 113.77027 * 107.74788 * 18 14 13 45 45 H 0.96999 * 119.99914 * 180.02562 * 23 22 20 46 46 H 1.08996 * 113.76886 * 221.15454 * 28 19 18 47 47 H 1.08997 * 113.76997 * 89.75399 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.0804 0.0540 2.3122 6 6 1.7816 1.4087 2.2955 7 6 1.8527 2.1450 3.4621 8 6 2.2263 1.5341 4.6449 9 6 2.5301 0.1853 4.6632 10 6 2.4603 -0.5554 3.4993 11 6 2.0324 -0.7105 -1.2303 12 8 2.6530 -1.7468 -1.1213 13 7 1.7919 -0.1943 -2.4519 14 6 2.1848 -0.9377 -3.6515 15 6 3.7011 -1.0892 -3.7895 16 6 4.3561 0.2933 -3.7642 17 8 5.7576 0.1608 -4.0095 18 6 1.4910 -0.4516 -4.9370 19 7 1.3380 -1.8829 -5.2733 20 6 1.1906 -2.5833 -6.4406 21 1 1.0977 -3.6590 -6.4169 22 6 1.1606 -1.9106 -7.6546 23 7 1.2733 -0.5996 -7.6835 24 14 0.9588 -2.8661 -9.2470 25 1 0.8535 -4.3161 -8.9444 26 1 -0.2731 -2.4146 -9.9426 27 1 2.1361 -2.6273 -10.1201 28 6 1.4102 -2.2538 -3.8466 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.4892 1.8862 1.3719 33 1 1.6158 3.1987 3.4505 34 1 2.2809 2.1114 5.5560 35 1 2.8220 -0.2895 5.5883 36 1 2.6973 -1.6090 3.5141 37 1 1.3588 0.6695 -2.5368 38 1 4.0832 -1.6875 -2.9624 39 1 3.9324 -1.5837 -4.7330 40 1 3.9100 0.9208 -4.5358 41 1 4.1998 0.7515 -2.7876 42 1 6.2383 0.9999 -4.0075 43 1 0.5459 0.0613 -4.7590 44 1 2.1505 0.0917 -5.6136 45 1 1.2519 -0.1296 -8.5317 46 1 2.0053 -3.1465 -3.6544 47 1 0.4413 -2.2713 -3.3477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506135214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:37 Heat of formation + Delta-G solvation = -34.405284 kcal Electronic energy + Delta-G solvation = -29223.287450 eV Core-core repulsion = 25180.767701 eV Total energy + Delta-G solvation = -4042.519748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.78706 -39.81418 -38.19804 -37.12365 -36.38038 -33.84954 -32.60824 -31.62071 -31.01156 -30.23468 -29.75544 -27.13631 -25.12547 -25.05393 -23.52326 -22.94904 -22.35950 -21.51936 -20.16327 -18.87606 -18.47995 -17.41639 -16.96621 -16.82848 -16.27224 -15.81466 -15.73211 -15.45669 -14.83297 -14.73127 -14.55444 -14.47339 -13.97894 -13.73363 -13.66711 -13.49623 -13.25952 -12.87251 -12.58926 -12.51534 -12.06103 -11.95822 -11.83344 -11.77762 -11.61283 -11.33736 -11.06468 -10.98441 -10.91472 -10.80306 -10.73093 -10.15664 -9.94835 -9.72686 -9.60033 -9.26856 -9.20739 -8.94960 -8.67976 -8.41222 -6.96979 -5.84087 -3.15824 1.07600 1.20496 2.56748 2.72654 3.37042 3.43006 3.45221 3.52414 3.62000 4.38410 4.43417 4.46738 4.56644 4.64144 4.68955 4.74332 4.89028 5.11150 5.12324 5.15772 5.17603 5.31928 5.41021 5.44562 5.45839 5.50921 5.69013 5.74930 5.77838 5.85247 5.91848 6.07137 6.14386 6.27492 6.27671 6.40150 6.44917 6.50860 6.60301 6.73676 6.80194 7.05941 7.17043 7.26738 7.44428 7.70508 7.89653 7.90515 8.40323 8.98180 9.64124 10.49415 11.33674 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.002567 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.188809 B =10903.965538 C =11415.642776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.064 3.936 3 H 0.095 0.905 4 O -0.283 6.283 5 C 0.135 3.865 6 C -0.215 4.215 7 C -0.080 4.080 8 C -0.164 4.164 9 C -0.080 4.080 10 C -0.152 4.152 11 C 0.516 3.484 12 O -0.510 6.510 13 N -0.711 5.711 14 C 0.126 3.874 15 C -0.097 4.097 16 C 0.084 3.916 17 O -0.573 6.573 18 C 0.167 3.833 19 N -0.604 5.604 20 C -0.219 4.219 21 H 0.083 0.917 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.914 3.086 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.289 1.289 28 C 0.126 3.874 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.397 0.603 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.033 0.967 42 H 0.372 0.628 43 H 0.032 0.968 44 H 0.083 0.917 45 H 0.254 0.746 46 H 0.053 0.947 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 9.668 21.314 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.004 3.996 3 H 0.113 0.887 4 O -0.195 6.195 5 C 0.089 3.911 6 C -0.233 4.233 7 C -0.098 4.098 8 C -0.182 4.182 9 C -0.098 4.098 10 C -0.170 4.170 11 C 0.300 3.700 12 O -0.384 6.384 13 N -0.364 5.364 14 C 0.040 3.960 15 C -0.136 4.136 16 C 0.006 3.994 17 O -0.378 6.378 18 C 0.041 3.959 19 N -0.330 5.330 20 C -0.346 4.346 21 H 0.101 0.899 22 C -0.203 4.203 23 N -0.570 5.570 24 Si 0.744 3.256 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 C -0.001 4.001 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.231 0.769 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.217 0.783 43 H 0.049 0.951 44 H 0.101 0.899 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.933 7.973 20.946 22.431 hybrid contribution -0.518 0.933 -0.905 1.399 sum 0.415 8.906 20.040 21.934 Atomic orbital electron populations 1.22295 0.92514 1.04613 1.03708 1.22294 0.95813 0.97049 0.84442 0.88735 1.86251 1.80343 1.37717 1.15184 1.19125 0.95172 0.90194 0.86585 1.21302 1.08612 0.93474 0.99932 1.20941 0.97186 0.99570 0.92069 1.21059 1.03699 0.95201 0.98255 1.20978 0.97574 0.93993 0.97290 1.20497 1.05213 1.01122 0.90187 1.19936 0.80282 0.85916 0.83902 1.90735 1.38432 1.23097 1.86114 1.46098 1.61874 1.23416 1.05032 1.23043 0.94367 0.94942 0.83674 1.21366 0.91601 0.96197 1.04398 1.22103 0.80765 0.98342 0.98146 1.86509 1.20739 1.35221 1.95321 1.22593 0.96161 0.88730 0.88416 1.45688 1.85305 1.02352 0.99664 1.19051 1.43061 0.90519 0.81967 0.89893 1.24776 1.02219 0.95787 0.97564 1.69787 1.56441 1.05905 1.24837 0.86014 0.77329 0.78906 0.83339 1.20382 1.21750 1.21617 1.22820 0.96041 0.95099 0.86110 0.90964 0.89959 0.90534 0.85261 0.85840 0.86030 0.85409 0.85034 0.76918 0.90592 0.89017 0.93294 0.94871 0.78264 0.95081 0.89901 0.93623 0.92925 0.94604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.23 37.16 0.34 -1.29 16 2 C 0.06 0.74 2.66 -27.89 -0.07 0.66 16 3 H 0.10 0.84 5.95 -51.93 -0.31 0.54 16 4 O -0.28 -3.89 9.34 -39.28 -0.37 -4.26 16 5 C 0.14 1.57 6.54 -39.21 -0.26 1.32 16 6 C -0.21 -2.03 8.38 -39.43 -0.33 -2.36 16 7 C -0.08 -0.65 10.04 -39.61 -0.40 -1.05 16 8 C -0.16 -1.30 10.04 -39.56 -0.40 -1.70 16 9 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 10 C -0.15 -1.61 9.99 -39.43 -0.39 -2.00 16 11 C 0.52 7.81 6.85 -10.99 -0.08 7.73 16 12 O -0.51 -9.98 14.79 -14.30 -0.21 -10.19 16 13 N -0.71 -10.13 4.63 -49.06 -0.23 -10.35 16 14 C 0.13 2.32 0.67 -134.02 -0.09 2.23 16 15 C -0.10 -1.87 4.81 -26.73 -0.13 -2.00 16 16 C 0.08 1.36 6.78 37.16 0.25 1.61 16 17 O -0.57 -9.28 13.66 -35.23 -0.48 -9.76 16 18 C 0.17 3.63 6.64 -2.83 -0.02 3.62 16 19 N -0.60 -15.12 3.55 -177.47 -0.63 -15.75 16 20 C -0.22 -6.04 10.70 -15.06 -0.16 -6.21 16 21 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -26.36 11.39 55.49 0.63 -25.73 16 24 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 C 0.13 2.70 7.72 -2.96 -0.02 2.68 16 29 H 0.07 0.58 7.40 -51.93 -0.38 0.20 16 30 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 32 H 0.13 1.00 5.72 -52.48 -0.30 0.70 16 33 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.40 4.34 8.66 -40.82 -0.35 3.99 16 38 H 0.08 1.55 6.82 -51.93 -0.35 1.20 16 39 H 0.09 2.05 8.02 -51.93 -0.42 1.63 16 40 H 0.05 0.78 7.40 -51.93 -0.38 0.40 16 41 H 0.03 0.48 7.85 -51.93 -0.41 0.07 16 42 H 0.37 3.98 9.12 45.56 0.42 4.39 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.99 6.52 -51.93 -0.34 1.65 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.05 1.17 8.10 -51.93 -0.42 0.75 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -34.77 387.29 -8.90 -43.66 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.18 Total: 7.75 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -2.25 Total: 1.87 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.22 Total: -51.84 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -1.06 Total: -24.22 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.77 -8.90 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506135214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.259 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds