Wall clock time and date at job start Tue Mar 31 2020 18:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47214 * 2 1 4 4 O 1.42902 * 109.46646 * 119.99918 * 2 1 3 5 5 C 1.35899 * 116.99898 * 276.60997 * 4 2 1 6 6 C 1.38734 * 120.05890 * 356.02593 * 5 4 2 7 7 C 1.38141 * 119.94610 * 179.74964 * 6 5 4 8 8 C 1.38266 * 120.05847 * 0.24482 * 7 6 5 9 9 C 1.38270 * 120.10965 * 0.02562 * 8 7 6 10 10 C 1.38141 * 120.05472 * 359.97030 * 9 8 7 11 11 C 1.50697 * 109.47398 * 239.99467 * 2 1 3 12 12 O 1.21280 * 120.00421 * 245.00271 * 11 2 1 13 13 N 1.34778 * 119.99740 * 64.99888 * 11 2 1 14 14 C 1.46494 * 120.00058 * 184.92985 * 13 11 2 15 15 C 1.53002 * 112.94758 * 294.27990 * 14 13 11 16 16 C 1.53004 * 109.46935 * 304.13625 * 15 14 13 17 17 O 1.42898 * 109.46985 * 185.00391 * 16 15 14 18 18 C 1.53950 * 113.74305 * 162.68833 * 14 13 11 19 19 N 1.47819 * 86.03640 * 222.08621 * 18 14 13 20 20 C 1.36930 * 134.45579 * 204.64194 * 19 18 14 21 21 H 1.07996 * 120.00468 * 179.86670 * 20 19 18 22 22 C 1.38823 * 119.99875 * 359.86911 * 20 19 18 23 23 N 1.31617 * 120.00011 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99744 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47402 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47429 * 119.99710 * 24 22 20 27 27 H 1.48505 * 109.46649 * 239.99773 * 24 22 20 28 28 C 1.47580 * 91.05158 * 24.54684 * 19 18 14 29 29 H 1.08998 * 109.47305 * 300.00342 * 1 2 3 30 30 H 1.09004 * 109.46872 * 60.00552 * 1 2 3 31 31 H 1.09008 * 109.47444 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.02123 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.97267 * 180.27862 * 7 6 5 34 34 H 1.08001 * 119.94552 * 180.02562 * 8 7 6 35 35 H 1.07998 * 119.96985 * 179.97438 * 9 8 7 36 36 H 1.07998 * 120.02984 * 180.02562 * 10 9 8 37 37 H 0.97006 * 120.00013 * 4.94005 * 13 11 2 38 38 H 1.09004 * 109.47146 * 64.13271 * 15 14 13 39 39 H 1.08999 * 109.46971 * 184.13759 * 15 14 13 40 40 H 1.09002 * 109.46873 * 304.99641 * 16 15 14 41 41 H 1.08999 * 109.46790 * 65.00170 * 16 15 14 42 42 H 0.96703 * 114.00124 * 180.02562 * 17 16 15 43 43 H 1.09001 * 113.76845 * 336.34798 * 18 14 13 44 44 H 1.08993 * 113.77027 * 107.74788 * 18 14 13 45 45 H 0.96999 * 119.99914 * 180.02562 * 23 22 20 46 46 H 1.08996 * 113.76886 * 221.15454 * 28 19 18 47 47 H 1.08997 * 113.76997 * 89.75399 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.0804 0.0540 2.3122 6 6 1.7816 1.4087 2.2955 7 6 1.8527 2.1450 3.4621 8 6 2.2263 1.5341 4.6449 9 6 2.5301 0.1853 4.6632 10 6 2.4603 -0.5554 3.4993 11 6 2.0324 -0.7105 -1.2303 12 8 2.6530 -1.7468 -1.1213 13 7 1.7919 -0.1943 -2.4519 14 6 2.1848 -0.9377 -3.6515 15 6 3.7011 -1.0892 -3.7895 16 6 4.3561 0.2933 -3.7642 17 8 5.7576 0.1608 -4.0095 18 6 1.4910 -0.4516 -4.9370 19 7 1.3380 -1.8829 -5.2733 20 6 1.1906 -2.5833 -6.4406 21 1 1.0977 -3.6590 -6.4169 22 6 1.1606 -1.9106 -7.6546 23 7 1.2733 -0.5996 -7.6835 24 14 0.9588 -2.8661 -9.2470 25 1 0.8535 -4.3161 -8.9444 26 1 -0.2731 -2.4146 -9.9426 27 1 2.1361 -2.6273 -10.1201 28 6 1.4102 -2.2538 -3.8466 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.4892 1.8862 1.3719 33 1 1.6158 3.1987 3.4505 34 1 2.2809 2.1114 5.5560 35 1 2.8220 -0.2895 5.5883 36 1 2.6973 -1.6090 3.5141 37 1 1.3588 0.6695 -2.5368 38 1 4.0832 -1.6875 -2.9624 39 1 3.9324 -1.5837 -4.7330 40 1 3.9100 0.9208 -4.5358 41 1 4.1998 0.7515 -2.7876 42 1 6.2383 0.9999 -4.0075 43 1 0.5459 0.0613 -4.7590 44 1 2.1505 0.0917 -5.6136 45 1 1.2519 -0.1296 -8.5317 46 1 2.0053 -3.1465 -3.6544 47 1 0.4413 -2.2713 -3.3477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506135214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:36 Heat of formation + Delta-G solvation = -59.339231 kcal Electronic energy + Delta-G solvation = -29224.368667 eV Core-core repulsion = 25180.767701 eV Total energy + Delta-G solvation = -4043.600965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86575 -41.00409 -39.45025 -38.11537 -37.72248 -35.37817 -34.12017 -32.95182 -31.89551 -31.47439 -30.50386 -29.01978 -26.88534 -26.10822 -24.94305 -23.78239 -23.39343 -22.95571 -21.36436 -20.26961 -19.35910 -18.80707 -18.59530 -18.22400 -17.16395 -16.97362 -16.78715 -16.63890 -16.54694 -15.96901 -15.82622 -15.60635 -15.27354 -15.11782 -14.78734 -14.44173 -14.34163 -14.05471 -13.85046 -13.58166 -13.38318 -13.27966 -13.25296 -12.91210 -12.82227 -12.81680 -12.59792 -12.43678 -12.26087 -12.09908 -12.03129 -11.75639 -11.64605 -11.41572 -11.00576 -10.90726 -10.60711 -10.14501 -9.91581 -9.14904 -8.97636 -7.94686 -5.27206 0.42624 0.51646 1.44566 1.46667 1.51104 1.55586 1.57467 2.42189 2.60133 2.88150 3.12432 3.24549 3.33083 3.55719 3.59253 3.70917 3.87916 3.96734 4.05872 4.12147 4.25569 4.29328 4.32818 4.43979 4.45276 4.54682 4.65085 4.66397 4.69411 4.70235 4.80057 4.82355 4.97132 5.11414 5.11946 5.13101 5.14943 5.20637 5.39297 5.46808 5.51500 5.64098 5.65312 5.87859 5.88315 6.38963 6.57759 6.89674 6.90257 7.21712 7.55240 8.47882 9.22363 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.002567 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.188809 B =10903.965538 C =11415.642776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 H 0.128 0.872 4 O -0.315 6.315 5 C 0.107 3.893 6 C -0.217 4.217 7 C -0.081 4.081 8 C -0.163 4.163 9 C -0.083 4.083 10 C -0.176 4.176 11 C 0.516 3.484 12 O -0.559 6.559 13 N -0.695 5.695 14 C 0.157 3.843 15 C -0.092 4.092 16 C 0.093 3.907 17 O -0.594 6.594 18 C 0.175 3.825 19 N -0.631 5.631 20 C -0.236 4.236 21 H 0.078 0.922 22 C -0.057 4.057 23 N -0.945 5.945 24 Si 0.977 3.023 25 H -0.271 1.271 26 H -0.288 1.288 27 H -0.291 1.291 28 C 0.123 3.877 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.122 0.878 37 H 0.418 0.582 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.397 0.603 43 H 0.042 0.958 44 H 0.060 0.940 45 H 0.252 0.748 46 H 0.036 0.964 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 12.240 22.990 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.012 3.988 3 H 0.146 0.854 4 O -0.229 6.229 5 C 0.062 3.938 6 C -0.236 4.236 7 C -0.099 4.099 8 C -0.181 4.181 9 C -0.101 4.101 10 C -0.194 4.194 11 C 0.302 3.698 12 O -0.436 6.436 13 N -0.350 5.350 14 C 0.070 3.930 15 C -0.131 4.131 16 C 0.016 3.984 17 O -0.402 6.402 18 C 0.049 3.951 19 N -0.358 5.358 20 C -0.364 4.364 21 H 0.095 0.905 22 C -0.251 4.251 23 N -0.594 5.594 24 Si 0.805 3.195 25 H -0.196 1.196 26 H -0.214 1.214 27 H -0.218 1.218 28 C -0.004 4.004 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.140 0.860 37 H 0.256 0.744 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.246 0.754 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.325 10.598 22.661 25.019 hybrid contribution -0.285 0.127 -1.293 1.330 sum 0.040 10.725 21.369 23.909 Atomic orbital electron populations 1.22305 0.90747 1.03916 1.05630 1.22306 0.96871 0.97502 0.82130 0.85430 1.86197 1.81203 1.39272 1.16225 1.19380 0.97039 0.91308 0.86030 1.21531 1.08191 0.92503 1.01339 1.21341 0.96146 1.00888 0.91547 1.21459 1.02278 0.95001 0.99399 1.21272 0.97016 0.94527 0.97286 1.20681 1.06407 1.01216 0.91142 1.20640 0.79049 0.85285 0.84847 1.90725 1.40628 1.25425 1.86839 1.45760 1.61719 1.23898 1.03648 1.22256 0.93377 0.93115 0.84266 1.21231 0.92411 0.97925 1.01536 1.21954 0.80862 0.96005 0.99613 1.86448 1.20724 1.37642 1.95412 1.22483 0.96302 0.87101 0.89215 1.45955 1.85535 1.04033 1.00286 1.19312 1.42807 0.90808 0.83455 0.90460 1.25523 1.02463 0.96806 1.00288 1.69923 1.57278 1.06925 1.25226 0.85045 0.76937 0.78061 0.79469 1.19599 1.21448 1.21767 1.22904 0.96646 0.96145 0.84661 0.89128 0.87878 0.92573 0.83453 0.83045 0.83418 0.83350 0.86032 0.74365 0.92086 0.92929 0.92950 0.92300 0.75359 0.94065 0.92153 0.93919 0.94583 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.23 71.98 0.66 -2.12 16 2 C 0.07 1.51 2.66 29.85 0.08 1.59 16 3 H 0.13 1.83 5.95 -2.39 -0.01 1.82 16 4 O -0.32 -8.57 9.34 -73.42 -0.69 -9.26 16 5 C 0.11 2.39 6.54 22.51 0.15 2.54 16 6 C -0.22 -3.50 8.38 22.37 0.19 -3.31 16 7 C -0.08 -1.04 10.04 22.25 0.22 -0.81 16 8 C -0.16 -2.07 10.04 22.28 0.22 -1.85 16 9 C -0.08 -1.27 10.04 22.25 0.22 -1.05 16 10 C -0.18 -3.69 9.99 22.37 0.22 -3.47 16 11 C 0.52 15.17 6.85 87.66 0.60 15.77 16 12 O -0.56 -22.32 14.79 15.96 0.24 -22.08 16 13 N -0.70 -18.84 4.63 -427.53 -1.98 -20.82 16 14 C 0.16 5.84 0.67 5.36 0.00 5.85 16 15 C -0.09 -3.64 4.81 30.60 0.15 -3.49 16 16 C 0.09 2.93 6.78 71.98 0.49 3.42 16 17 O -0.59 -18.70 13.66 -148.98 -2.03 -20.73 16 18 C 0.17 7.64 6.64 86.44 0.57 8.22 16 19 N -0.63 -32.43 3.55 -715.40 -2.54 -34.97 16 20 C -0.24 -13.35 10.70 84.04 0.90 -12.45 16 21 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 22 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 23 N -0.95 -54.67 11.39 21.65 0.25 -54.42 16 24 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 27 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 28 C 0.12 5.40 7.72 86.49 0.67 6.07 16 29 H 0.09 1.19 7.40 -2.39 -0.02 1.18 16 30 H 0.10 1.25 8.10 -2.38 -0.02 1.23 16 31 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.15 1.68 5.72 -2.91 -0.02 1.67 16 33 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 34 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 36 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.42 7.95 8.66 -92.70 -0.80 7.14 16 38 H 0.06 2.59 6.82 -2.39 -0.02 2.57 16 39 H 0.05 2.47 8.02 -2.39 -0.02 2.45 16 40 H 0.05 1.62 7.40 -2.39 -0.02 1.60 16 41 H 0.06 1.56 7.85 -2.39 -0.02 1.54 16 42 H 0.40 7.76 9.12 -74.05 -0.68 7.09 16 43 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 2.94 6.52 -2.39 -0.02 2.92 16 45 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 46 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 47 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -78.56 387.29 0.62 -77.95 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.48 Total: 24.49 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.82 Total: 12.16 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -4.27 Total: -110.21 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -2.48 Total: -52.07 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -78.56 0.62 -77.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506135214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.608 kcal (2) G-P(sol) polarization free energy of solvation -78.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds