Wall clock time and date at job start Tue Mar 31 2020 18:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47213 * 2 1 4 4 O 1.42897 * 109.47578 * 239.99678 * 2 1 3 5 5 C 1.35891 * 117.00162 * 85.12101 * 4 2 1 6 6 C 1.38739 * 120.05568 * 354.55328 * 5 4 2 7 7 C 1.38144 * 119.94407 * 180.02562 * 6 5 4 8 8 C 1.38268 * 120.05620 * 359.97438 * 7 6 5 9 9 C 1.38264 * 120.11201 * 0.30379 * 8 7 6 10 10 C 1.38150 * 120.05492 * 359.44115 * 9 8 7 11 11 C 1.50703 * 109.46980 * 119.99549 * 2 1 3 12 12 O 1.21283 * 120.00097 * 120.00512 * 11 2 1 13 13 N 1.34776 * 120.00128 * 300.00266 * 11 2 1 14 14 C 1.46503 * 120.00349 * 184.85163 * 13 11 2 15 15 C 1.52998 * 112.94115 * 294.87741 * 14 13 11 16 16 C 1.52998 * 109.47262 * 305.07923 * 15 14 13 17 17 O 1.42903 * 109.47425 * 184.96182 * 16 15 14 18 18 C 1.53943 * 113.74527 * 163.28311 * 14 13 11 19 19 N 1.47805 * 86.03502 * 222.08225 * 18 14 13 20 20 C 1.36946 * 134.45559 * 204.64073 * 19 18 14 21 21 H 1.07994 * 119.99675 * 179.86811 * 20 19 18 22 22 C 1.38811 * 119.99808 * 359.87402 * 20 19 18 23 23 N 1.31615 * 120.00131 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99935 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47189 * 89.99700 * 24 22 20 26 26 H 1.48493 * 109.47303 * 209.99671 * 24 22 20 27 27 H 1.48505 * 109.46884 * 329.99978 * 24 22 20 28 28 C 1.47579 * 91.05463 * 24.55208 * 19 18 14 29 29 H 1.08992 * 109.47003 * 300.00225 * 1 2 3 30 30 H 1.08991 * 109.46689 * 60.00523 * 1 2 3 31 31 H 1.09004 * 109.46738 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.02779 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.96888 * 180.02562 * 7 6 5 34 34 H 1.07996 * 119.94472 * 180.02562 * 8 7 6 35 35 H 1.08002 * 119.97109 * 179.70099 * 9 8 7 36 36 H 1.07995 * 120.02443 * 180.25967 * 10 9 8 37 37 H 0.96996 * 120.00058 * 4.84355 * 13 11 2 38 38 H 1.08997 * 109.47511 * 65.07742 * 15 14 13 39 39 H 1.09001 * 109.47103 * 185.07878 * 15 14 13 40 40 H 1.09007 * 109.47312 * 304.96255 * 16 15 14 41 41 H 1.09001 * 109.47416 * 64.95734 * 16 15 14 42 42 H 0.96697 * 113.99698 * 179.97438 * 17 16 15 43 43 H 1.09001 * 113.76750 * 336.34742 * 18 14 13 44 44 H 1.09000 * 113.76436 * 107.74422 * 18 14 13 45 45 H 0.96996 * 120.00460 * 180.02562 * 23 22 20 46 46 H 1.09001 * 113.77017 * 221.15357 * 28 19 18 47 47 H 1.08998 * 113.87531 * 89.76318 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0065 -0.6737 -1.1667 5 6 2.1151 0.0630 -2.3034 6 6 1.6649 1.3752 -2.3267 7 6 1.7760 2.1218 -3.4837 8 6 2.3357 1.5627 -4.6176 9 6 2.7799 0.2535 -4.5987 10 6 2.6759 -0.4958 -3.4427 11 6 2.0324 -0.7103 1.2305 12 8 2.7297 -1.6964 1.1194 13 7 1.7067 -0.2498 2.4546 14 6 2.2802 -0.8750 3.6490 15 6 1.8298 -2.3249 3.8378 16 6 0.3011 -2.3871 3.8468 17 8 -0.1197 -3.7213 4.1381 18 6 2.1531 -0.0159 4.9201 19 7 3.5409 -0.4301 5.2151 20 6 4.2857 -0.5426 6.3588 21 1 5.3099 -0.8808 6.3051 22 6 3.7240 -0.2220 7.5871 23 7 2.4759 0.1906 7.6524 24 14 4.7396 -0.3761 9.1472 25 1 5.4387 0.9072 9.4116 26 1 3.8468 -0.6977 10.2894 27 1 5.7409 -1.4601 8.9810 28 6 3.8008 -0.6758 3.7833 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2273 1.8122 -1.4414 33 1 1.4261 3.1434 -3.5021 34 1 2.4220 2.1482 -5.5210 35 1 3.2123 -0.1825 -5.4872 36 1 3.0268 -1.5170 -3.4272 37 1 1.0927 0.4956 2.5448 38 1 2.2134 -2.9341 3.0194 39 1 2.2144 -2.7045 4.7845 40 1 -0.0857 -1.7097 4.6082 41 1 -0.0803 -2.0909 2.8696 42 1 -1.0798 -3.8348 4.1604 43 1 2.0458 1.0503 4.7207 44 1 1.4199 -0.3926 5.6333 45 1 2.0835 0.4150 8.5106 46 1 4.3808 -1.5784 3.5907 47 1 4.1789 0.1950 3.2478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506135215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:39 Heat of formation + Delta-G solvation = -34.957138 kcal Electronic energy + Delta-G solvation = -29231.048006 eV Core-core repulsion = 25188.504328 eV Total energy + Delta-G solvation = -4042.543678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.78663 -39.81035 -38.19038 -37.11561 -36.37833 -33.88117 -32.63212 -31.61406 -30.97379 -30.23678 -29.77168 -27.11336 -25.12121 -25.03767 -23.52191 -22.94256 -22.36437 -21.54759 -20.13730 -18.86518 -18.47141 -17.45006 -16.94525 -16.82875 -16.30480 -15.80363 -15.69283 -15.45467 -14.80291 -14.78182 -14.54819 -14.31959 -14.09829 -13.73635 -13.68133 -13.52469 -13.33003 -12.76631 -12.63660 -12.55741 -12.08822 -11.92410 -11.80069 -11.78554 -11.62482 -11.25715 -11.07075 -11.00193 -10.95391 -10.78371 -10.72723 -10.18904 -9.95188 -9.72512 -9.60200 -9.25901 -9.19895 -8.94389 -8.67412 -8.40512 -6.96953 -5.83783 -3.15683 1.08999 1.21358 2.57812 2.73551 3.37499 3.42828 3.44698 3.55910 3.58901 4.38300 4.45583 4.47261 4.59692 4.64285 4.65243 4.75499 4.88494 5.09052 5.12980 5.14907 5.18094 5.29632 5.36820 5.43655 5.45554 5.51397 5.69074 5.75562 5.77786 5.78697 5.92599 6.08088 6.15825 6.27997 6.28845 6.40886 6.44731 6.52026 6.60218 6.74197 6.80608 7.06076 7.17658 7.27057 7.44349 7.70843 7.90012 7.90675 8.40549 8.98317 9.64279 10.49555 11.33906 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017425 B = 0.002662 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.488832 B =10517.597859 C =11305.827194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.064 3.936 3 H 0.098 0.902 4 O -0.283 6.283 5 C 0.134 3.866 6 C -0.214 4.214 7 C -0.080 4.080 8 C -0.163 4.163 9 C -0.081 4.081 10 C -0.151 4.151 11 C 0.516 3.484 12 O -0.510 6.510 13 N -0.711 5.711 14 C 0.126 3.874 15 C -0.097 4.097 16 C 0.084 3.916 17 O -0.573 6.573 18 C 0.167 3.833 19 N -0.603 5.603 20 C -0.220 4.220 21 H 0.083 0.917 22 C -0.006 4.006 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.125 3.875 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.397 0.603 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.034 0.966 42 H 0.372 0.628 43 H 0.031 0.969 44 H 0.083 0.917 45 H 0.254 0.746 46 H 0.053 0.947 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.274 3.741 -21.070 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.004 3.996 3 H 0.116 0.884 4 O -0.195 6.195 5 C 0.088 3.912 6 C -0.232 4.232 7 C -0.098 4.098 8 C -0.181 4.181 9 C -0.099 4.099 10 C -0.169 4.169 11 C 0.299 3.701 12 O -0.384 6.384 13 N -0.364 5.364 14 C 0.040 3.960 15 C -0.135 4.135 16 C 0.007 3.993 17 O -0.378 6.378 18 C 0.041 3.959 19 N -0.330 5.330 20 C -0.347 4.347 21 H 0.101 0.899 22 C -0.203 4.203 23 N -0.570 5.570 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.002 4.002 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.231 0.769 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.217 0.783 43 H 0.049 0.951 44 H 0.101 0.899 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.970 2.719 -20.715 22.025 hybrid contribution -0.469 0.971 0.887 1.396 sum -7.439 3.690 -19.828 21.497 Atomic orbital electron populations 1.22346 0.92862 1.04419 1.03739 1.22300 0.95593 0.97225 0.84468 0.88421 1.86230 1.80772 1.36792 1.15723 1.19123 0.94871 0.90342 0.86830 1.21337 1.07247 0.94373 1.00260 1.20949 0.97191 0.99373 0.92322 1.21060 1.02464 0.95863 0.98751 1.20981 0.97826 0.93999 0.97089 1.20504 1.03598 1.01585 0.91251 1.19954 0.81235 0.84954 0.83924 1.90736 1.36722 1.24730 1.86207 1.46116 1.48810 1.36455 1.05062 1.23043 0.95166 0.93850 0.83952 1.21358 0.93281 0.94567 1.04314 1.22101 0.96217 0.83067 0.97943 1.86511 1.26793 1.29973 1.94512 1.22591 0.89794 0.94349 0.89164 1.45681 1.10208 1.77051 1.00017 1.19006 0.94706 1.38334 0.82653 0.89949 1.24771 0.96635 1.01368 0.97522 1.69774 1.12399 1.50551 1.24253 0.86084 0.78966 0.77767 0.82756 1.21611 1.21575 1.20506 1.22828 0.92729 0.98257 0.86365 0.90126 0.90795 0.90629 0.85223 0.85826 0.86026 0.85407 0.85028 0.76909 0.90554 0.89050 0.93379 0.94763 0.78284 0.95117 0.89880 0.93565 0.92917 0.94678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 9.07 37.16 0.34 -1.16 16 2 C 0.06 0.74 2.65 -27.88 -0.07 0.67 16 3 H 0.10 0.94 6.30 -51.93 -0.33 0.61 16 4 O -0.28 -3.89 9.33 -39.31 -0.37 -4.26 16 5 C 0.13 1.58 6.60 -39.21 -0.26 1.32 16 6 C -0.21 -2.06 8.25 -39.43 -0.33 -2.39 16 7 C -0.08 -0.67 10.04 -39.60 -0.40 -1.07 16 8 C -0.16 -1.33 10.04 -39.56 -0.40 -1.73 16 9 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 10 C -0.15 -1.63 9.99 -39.43 -0.39 -2.02 16 11 C 0.52 7.81 6.90 -10.98 -0.08 7.73 16 12 O -0.51 -9.99 14.78 -14.35 -0.21 -10.20 16 13 N -0.71 -10.16 4.55 -49.08 -0.22 -10.38 16 14 C 0.13 2.33 0.67 -134.05 -0.09 2.24 16 15 C -0.10 -1.86 4.79 -26.73 -0.13 -1.98 16 16 C 0.08 1.35 6.77 37.16 0.25 1.60 16 17 O -0.57 -9.20 13.66 -35.23 -0.48 -9.68 16 18 C 0.17 3.65 6.65 -2.84 -0.02 3.63 16 19 N -0.60 -15.17 3.55 -177.54 -0.63 -15.80 16 20 C -0.22 -6.09 10.70 -15.05 -0.16 -6.25 16 21 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 23 N -0.92 -26.40 11.39 55.49 0.63 -25.77 16 24 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 C 0.12 2.69 7.76 -2.97 -0.02 2.67 16 29 H 0.08 0.52 7.46 -51.93 -0.39 0.13 16 30 H 0.07 0.54 6.93 -51.93 -0.36 0.18 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.13 1.03 5.44 -52.49 -0.29 0.74 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.40 4.37 7.99 -40.82 -0.33 4.04 16 38 H 0.08 1.56 6.81 -51.93 -0.35 1.21 16 39 H 0.09 2.04 8.02 -51.93 -0.42 1.62 16 40 H 0.05 0.76 7.48 -51.93 -0.39 0.37 16 41 H 0.03 0.49 7.83 -51.93 -0.41 0.08 16 42 H 0.37 3.92 9.12 45.56 0.42 4.33 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.99 6.59 -51.93 -0.34 1.65 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.05 1.18 8.10 -51.93 -0.42 0.76 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -34.82 385.43 -8.85 -43.67 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.10 Total: 7.77 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.25 Total: 1.88 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.22 Total: -51.95 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -1.06 Total: -24.14 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.82 -8.85 -43.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506135215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.712 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds