Wall clock time and date at job start Tue Mar 31 2020 18:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47213 * 2 1 4 4 O 1.42897 * 109.47578 * 239.99678 * 2 1 3 5 5 C 1.35891 * 117.00162 * 85.12101 * 4 2 1 6 6 C 1.38739 * 120.05568 * 354.55328 * 5 4 2 7 7 C 1.38144 * 119.94407 * 180.02562 * 6 5 4 8 8 C 1.38268 * 120.05620 * 359.97438 * 7 6 5 9 9 C 1.38264 * 120.11201 * 0.30379 * 8 7 6 10 10 C 1.38150 * 120.05492 * 359.44115 * 9 8 7 11 11 C 1.50703 * 109.46980 * 119.99549 * 2 1 3 12 12 O 1.21283 * 120.00097 * 120.00512 * 11 2 1 13 13 N 1.34776 * 120.00128 * 300.00266 * 11 2 1 14 14 C 1.46503 * 120.00349 * 184.85163 * 13 11 2 15 15 C 1.52998 * 112.94115 * 294.87741 * 14 13 11 16 16 C 1.52998 * 109.47262 * 305.07923 * 15 14 13 17 17 O 1.42903 * 109.47425 * 184.96182 * 16 15 14 18 18 C 1.53943 * 113.74527 * 163.28311 * 14 13 11 19 19 N 1.47805 * 86.03502 * 222.08225 * 18 14 13 20 20 C 1.36946 * 134.45559 * 204.64073 * 19 18 14 21 21 H 1.07994 * 119.99675 * 179.86811 * 20 19 18 22 22 C 1.38811 * 119.99808 * 359.87402 * 20 19 18 23 23 N 1.31615 * 120.00131 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99935 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47189 * 89.99700 * 24 22 20 26 26 H 1.48493 * 109.47303 * 209.99671 * 24 22 20 27 27 H 1.48505 * 109.46884 * 329.99978 * 24 22 20 28 28 C 1.47579 * 91.05463 * 24.55208 * 19 18 14 29 29 H 1.08992 * 109.47003 * 300.00225 * 1 2 3 30 30 H 1.08991 * 109.46689 * 60.00523 * 1 2 3 31 31 H 1.09004 * 109.46738 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.02779 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.96888 * 180.02562 * 7 6 5 34 34 H 1.07996 * 119.94472 * 180.02562 * 8 7 6 35 35 H 1.08002 * 119.97109 * 179.70099 * 9 8 7 36 36 H 1.07995 * 120.02443 * 180.25967 * 10 9 8 37 37 H 0.96996 * 120.00058 * 4.84355 * 13 11 2 38 38 H 1.08997 * 109.47511 * 65.07742 * 15 14 13 39 39 H 1.09001 * 109.47103 * 185.07878 * 15 14 13 40 40 H 1.09007 * 109.47312 * 304.96255 * 16 15 14 41 41 H 1.09001 * 109.47416 * 64.95734 * 16 15 14 42 42 H 0.96697 * 113.99698 * 179.97438 * 17 16 15 43 43 H 1.09001 * 113.76750 * 336.34742 * 18 14 13 44 44 H 1.09000 * 113.76436 * 107.74422 * 18 14 13 45 45 H 0.96996 * 120.00460 * 180.02562 * 23 22 20 46 46 H 1.09001 * 113.77017 * 221.15357 * 28 19 18 47 47 H 1.08998 * 113.87531 * 89.76318 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0065 -0.6737 -1.1667 5 6 2.1151 0.0630 -2.3034 6 6 1.6649 1.3752 -2.3267 7 6 1.7760 2.1218 -3.4837 8 6 2.3357 1.5627 -4.6176 9 6 2.7799 0.2535 -4.5987 10 6 2.6759 -0.4958 -3.4427 11 6 2.0324 -0.7103 1.2305 12 8 2.7297 -1.6964 1.1194 13 7 1.7067 -0.2498 2.4546 14 6 2.2802 -0.8750 3.6490 15 6 1.8298 -2.3249 3.8378 16 6 0.3011 -2.3871 3.8468 17 8 -0.1197 -3.7213 4.1381 18 6 2.1531 -0.0159 4.9201 19 7 3.5409 -0.4301 5.2151 20 6 4.2857 -0.5426 6.3588 21 1 5.3099 -0.8808 6.3051 22 6 3.7240 -0.2220 7.5871 23 7 2.4759 0.1906 7.6524 24 14 4.7396 -0.3761 9.1472 25 1 5.4387 0.9072 9.4116 26 1 3.8468 -0.6977 10.2894 27 1 5.7409 -1.4601 8.9810 28 6 3.8008 -0.6758 3.7833 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2273 1.8122 -1.4414 33 1 1.4261 3.1434 -3.5021 34 1 2.4220 2.1482 -5.5210 35 1 3.2123 -0.1825 -5.4872 36 1 3.0268 -1.5170 -3.4272 37 1 1.0927 0.4956 2.5448 38 1 2.2134 -2.9341 3.0194 39 1 2.2144 -2.7045 4.7845 40 1 -0.0857 -1.7097 4.6082 41 1 -0.0803 -2.0909 2.8696 42 1 -1.0798 -3.8348 4.1604 43 1 2.0458 1.0503 4.7207 44 1 1.4199 -0.3926 5.6333 45 1 2.0835 0.4150 8.5106 46 1 4.3808 -1.5784 3.5907 47 1 4.1789 0.1950 3.2478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506135215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:39 Heat of formation + Delta-G solvation = -59.906986 kcal Electronic energy + Delta-G solvation = -29232.129913 eV Core-core repulsion = 25188.504328 eV Total energy + Delta-G solvation = -4043.625585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86974 -41.00466 -39.45057 -38.11471 -37.71158 -35.39382 -34.14684 -32.93312 -31.89693 -31.46760 -30.51936 -29.00160 -26.88903 -26.04890 -24.95774 -23.78660 -23.38497 -22.98807 -21.35984 -20.26998 -19.34379 -18.80854 -18.63616 -18.20025 -17.17049 -17.00934 -16.70289 -16.68538 -16.53702 -15.99600 -15.80648 -15.44065 -15.36711 -15.11118 -14.91108 -14.42650 -14.36199 -14.06841 -13.76112 -13.61840 -13.39668 -13.27453 -13.21380 -12.91415 -12.81510 -12.79056 -12.58456 -12.42148 -12.24868 -12.07761 -12.04767 -11.77265 -11.69229 -11.42199 -10.99963 -10.90061 -10.60442 -10.14356 -9.91870 -9.15859 -8.98151 -7.94760 -5.27558 0.41925 0.50406 1.45031 1.46907 1.52451 1.54970 1.57666 2.42004 2.59429 2.87529 3.13052 3.23770 3.33102 3.56987 3.57258 3.74250 3.90749 3.96563 4.03752 4.13239 4.25974 4.30051 4.31483 4.43832 4.46220 4.54122 4.65615 4.67456 4.68520 4.70368 4.79587 4.81807 4.97885 5.10938 5.11857 5.14085 5.15284 5.20795 5.38641 5.46303 5.50838 5.63319 5.65128 5.87353 5.88039 6.38707 6.57522 6.89285 6.91583 7.21667 7.54955 8.47532 9.22085 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017425 B = 0.002662 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.488832 B =10517.597859 C =11305.827194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 H 0.122 0.878 4 O -0.315 6.315 5 C 0.107 3.893 6 C -0.217 4.217 7 C -0.083 4.083 8 C -0.163 4.163 9 C -0.084 4.084 10 C -0.175 4.175 11 C 0.515 3.485 12 O -0.559 6.559 13 N -0.696 5.696 14 C 0.157 3.843 15 C -0.091 4.091 16 C 0.094 3.906 17 O -0.594 6.594 18 C 0.174 3.826 19 N -0.631 5.631 20 C -0.238 4.238 21 H 0.078 0.922 22 C -0.056 4.056 23 N -0.945 5.945 24 Si 0.977 3.023 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.275 1.275 28 C 0.121 3.879 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.122 0.878 37 H 0.418 0.582 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.397 0.603 43 H 0.041 0.959 44 H 0.061 0.939 45 H 0.252 0.748 46 H 0.036 0.964 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.684 5.763 -22.675 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 H 0.139 0.861 4 O -0.228 6.228 5 C 0.062 3.938 6 C -0.235 4.235 7 C -0.101 4.101 8 C -0.181 4.181 9 C -0.102 4.102 10 C -0.194 4.194 11 C 0.301 3.699 12 O -0.436 6.436 13 N -0.351 5.351 14 C 0.070 3.930 15 C -0.130 4.130 16 C 0.016 3.984 17 O -0.402 6.402 18 C 0.049 3.951 19 N -0.358 5.358 20 C -0.366 4.366 21 H 0.095 0.905 22 C -0.250 4.250 23 N -0.593 5.593 24 Si 0.805 3.195 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.200 1.200 28 C -0.005 4.005 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.140 0.860 37 H 0.256 0.744 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.246 0.754 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.425 4.770 -22.358 24.365 hybrid contribution 0.004 0.325 1.259 1.300 sum -8.421 5.095 -21.100 23.282 Atomic orbital electron populations 1.22369 0.90181 1.04329 1.05877 1.22337 0.97387 0.97098 0.82102 0.86089 1.86173 1.81669 1.38276 1.16711 1.19378 0.96585 0.91458 0.86401 1.21567 1.06934 0.93474 1.01541 1.21349 0.96433 1.00503 0.91786 1.21459 1.01210 0.95650 0.99782 1.21278 0.97472 0.94385 0.97019 1.20694 1.04646 1.01788 0.92263 1.20670 0.80043 0.84279 0.84870 1.90725 1.38895 1.27092 1.86921 1.45780 1.48836 1.36734 1.03707 1.22255 0.93085 0.93149 0.84495 1.21219 0.95972 0.94409 1.01430 1.21950 0.93589 0.83407 0.99445 1.86449 1.29417 1.29765 1.94600 1.22479 0.87701 0.95008 0.89917 1.45947 1.11594 1.77517 1.00692 1.19283 0.95001 1.38212 0.84113 0.90467 1.25524 0.97815 1.01543 1.00133 1.69914 1.13480 1.51340 1.24581 0.85110 0.77577 0.77815 0.78996 1.21071 1.21626 1.19972 1.22917 0.94948 0.97754 0.84919 0.87491 0.89105 0.91853 0.83470 0.83093 0.83414 0.83314 0.85988 0.74392 0.92088 0.92981 0.92976 0.92175 0.75369 0.94160 0.92101 0.93890 0.94538 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.07 71.98 0.65 -1.74 16 2 C 0.07 1.49 2.65 29.85 0.08 1.57 16 3 H 0.12 1.98 6.30 -2.39 -0.02 1.97 16 4 O -0.31 -8.58 9.33 -73.29 -0.68 -9.26 16 5 C 0.11 2.43 6.60 22.51 0.15 2.58 16 6 C -0.22 -3.65 8.25 22.37 0.18 -3.47 16 7 C -0.08 -1.12 10.04 22.25 0.22 -0.90 16 8 C -0.16 -2.18 10.04 22.28 0.22 -1.95 16 9 C -0.08 -1.33 10.04 22.26 0.22 -1.10 16 10 C -0.18 -3.77 9.99 22.37 0.22 -3.55 16 11 C 0.52 15.19 6.90 87.66 0.61 15.80 16 12 O -0.56 -22.34 14.78 16.00 0.24 -22.10 16 13 N -0.70 -18.92 4.55 -427.59 -1.95 -20.87 16 14 C 0.16 5.88 0.67 5.36 0.00 5.88 16 15 C -0.09 -3.61 4.79 30.59 0.15 -3.46 16 16 C 0.09 2.93 6.77 71.98 0.49 3.41 16 17 O -0.59 -18.58 13.66 -148.98 -2.04 -20.61 16 18 C 0.17 7.67 6.65 86.44 0.57 8.25 16 19 N -0.63 -32.53 3.55 -715.62 -2.54 -35.07 16 20 C -0.24 -13.52 10.70 84.03 0.90 -12.62 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 22 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 23 N -0.95 -54.71 11.39 21.65 0.25 -54.46 16 24 Si 0.98 45.66 29.55 68.60 2.03 47.68 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 28 C 0.12 5.35 7.76 86.49 0.67 6.02 16 29 H 0.11 0.92 7.46 -2.39 -0.02 0.90 16 30 H 0.09 1.02 6.93 -2.39 -0.02 1.00 16 31 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.15 1.81 5.44 -2.91 -0.02 1.79 16 33 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 34 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.42 8.01 7.99 -92.71 -0.74 7.27 16 38 H 0.06 2.59 6.81 -2.39 -0.02 2.57 16 39 H 0.05 2.44 8.02 -2.39 -0.02 2.43 16 40 H 0.05 1.60 7.48 -2.38 -0.02 1.58 16 41 H 0.06 1.58 7.83 -2.39 -0.02 1.56 16 42 H 0.40 7.68 9.12 -74.06 -0.68 7.00 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.06 2.97 6.59 -2.39 -0.02 2.95 16 45 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 47 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -78.69 385.43 0.71 -77.98 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.41 Total: 24.69 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 5.81 Total: 12.02 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -4.24 Total: -110.40 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -2.48 Total: -51.98 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -78.69 0.71 -77.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506135215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.074 kcal (2) G-P(sol) polarization free energy of solvation -78.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds