Wall clock time and date at job start Tue Mar 31 2020 17:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46396 * 2 1 4 4 C 1.53004 * 109.47149 * 119.99658 * 2 1 3 5 5 N 1.46498 * 109.46761 * 175.00288 * 4 2 1 6 6 C 1.36937 * 119.99794 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99880 * 0.02562 * 6 5 4 8 8 C 1.38805 * 120.00257 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99777 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00255 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46758 * 90.00559 * 10 8 6 12 12 H 1.48502 * 109.47322 * 210.00152 * 10 8 6 13 13 H 1.48500 * 109.46954 * 330.00551 * 10 8 6 14 14 N 1.46491 * 109.47340 * 240.00076 * 2 1 3 15 15 C 1.46505 * 119.99936 * 299.99895 * 14 2 1 16 16 C 1.34777 * 120.00128 * 119.99678 * 14 2 1 17 17 O 1.21280 * 119.99985 * 359.97438 * 16 14 2 18 18 C 1.50701 * 119.99800 * 180.02562 * 16 14 2 19 19 C 1.50699 * 109.46979 * 179.97438 * 18 16 14 20 20 C 1.38261 * 119.94433 * 89.99687 * 19 18 16 21 21 C 1.38197 * 120.11321 * 180.02562 * 20 19 18 22 22 C 1.38695 * 120.06560 * 0.28535 * 21 20 19 23 23 C 1.38977 * 119.82245 * 359.34197 * 22 21 20 24 24 C 1.38199 * 119.94677 * 269.97744 * 19 18 16 25 25 O 1.36105 * 120.78464 * 180.54739 * 23 22 21 26 26 C 1.43180 * 116.71241 * 342.97675 * 25 23 22 27 27 C 1.53464 * 108.25991 * 46.17612 * 26 25 23 28 28 O 1.36102 * 119.39637 * 179.90769 * 22 21 20 29 29 H 1.09002 * 109.47574 * 60.00351 * 1 2 3 30 30 H 1.09008 * 109.46873 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47882 * 299.99924 * 1 2 3 32 32 H 1.08996 * 109.47106 * 295.00382 * 4 2 1 33 33 H 1.08998 * 109.46688 * 55.00086 * 4 2 1 34 34 H 0.96998 * 120.00092 * 0.02562 * 5 4 2 35 35 H 0.97004 * 120.00077 * 179.97438 * 9 8 6 36 36 H 1.09008 * 109.46908 * 269.99759 * 15 14 2 37 37 H 1.08995 * 109.47355 * 29.99913 * 15 14 2 38 38 H 1.09004 * 109.47238 * 150.00181 * 15 14 2 39 39 H 1.08995 * 109.47360 * 60.00224 * 18 16 14 40 40 H 1.08997 * 109.47399 * 299.99564 * 18 16 14 41 41 H 1.07998 * 119.93806 * 0.03139 * 20 19 18 42 42 H 1.08002 * 119.96327 * 180.02562 * 21 20 19 43 43 H 1.08006 * 119.96196 * 359.97438 * 24 19 18 44 44 H 1.09006 * 109.70387 * 165.86302 * 26 25 23 45 45 H 1.08996 * 109.70852 * 286.47737 * 26 25 23 46 46 H 1.09002 * 109.70898 * 59.97294 * 27 26 25 47 47 H 1.09001 * 109.71016 * 180.59990 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1906 6 6 4.1839 -1.4377 2.2073 7 1 3.6469 -1.8428 3.0522 8 6 5.5672 -1.5377 2.1515 9 7 6.2217 -1.0444 1.1216 10 14 6.5001 -2.3725 3.5380 11 1 6.6318 -3.8220 3.2435 12 1 7.8508 -1.7675 3.6605 13 1 5.7592 -2.1915 4.8122 14 7 2.0184 -0.6905 -1.1961 15 6 1.6645 -2.0932 -1.4279 16 6 2.7932 -0.0355 -2.0833 17 8 3.0857 1.1258 -1.8916 18 6 3.2951 -0.7458 -3.3140 19 6 4.1318 0.2016 -4.1346 20 6 5.4935 0.2897 -3.9118 21 6 6.2641 1.1577 -4.6619 22 6 5.6721 1.9472 -5.6365 23 6 4.3047 1.8530 -5.8659 24 6 3.5369 0.9805 -5.1089 25 8 3.7054 2.6104 -6.8248 26 6 4.4410 3.7410 -7.3051 27 6 5.8816 3.2930 -7.5865 28 8 6.4436 2.7986 -6.3660 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7197 1.2952 34 1 3.9824 -0.4620 0.4319 35 1 7.1884 -1.1139 1.0827 36 1 2.4159 -2.7377 -0.9716 37 1 0.6905 -2.3003 -0.9846 38 1 1.6239 -2.2853 -2.5002 39 1 2.4471 -1.0880 -3.9072 40 1 3.9005 -1.6024 -3.0177 41 1 5.9557 -0.3209 -3.1503 42 1 7.3276 1.2242 -4.4861 43 1 2.4731 0.9092 -5.2814 44 1 3.9857 4.1127 -8.2231 45 1 4.4413 4.5270 -6.5500 46 1 5.8808 2.5029 -8.3374 47 1 6.4668 4.1402 -7.9442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568315917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:11 Heat of formation + Delta-G solvation = -63.393022 kcal Electronic energy + Delta-G solvation = -29286.507053 eV Core-core repulsion = 25242.730302 eV Total energy + Delta-G solvation = -4043.776751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.23711 -39.74406 -37.83021 -37.25748 -36.16526 -33.95832 -32.65746 -31.61212 -30.82661 -30.06560 -29.28131 -26.91824 -26.55246 -25.53797 -24.53383 -22.80043 -22.49239 -21.26958 -20.23275 -18.76922 -18.41750 -17.26837 -17.20433 -17.00476 -16.83512 -15.72190 -15.42536 -15.29183 -15.03824 -14.63386 -14.43873 -14.25659 -14.12931 -13.78633 -13.61665 -13.23629 -13.21453 -13.05892 -12.85147 -12.45017 -12.24488 -12.06453 -11.88506 -11.85859 -11.56622 -11.52997 -11.36277 -11.17396 -11.00722 -10.81418 -10.74375 -10.48210 -10.38695 -10.01551 -9.66258 -9.33763 -8.83543 -8.48341 -8.15809 -7.91188 -6.85760 -5.70015 -2.98926 1.37352 1.46054 2.95032 3.11180 3.16236 3.40614 3.45595 3.50917 3.52903 3.87301 4.09632 4.61149 4.62534 4.65170 4.70340 4.85523 4.97563 5.02939 5.18439 5.25635 5.34283 5.39215 5.43169 5.45206 5.50071 5.59693 5.62184 5.64583 5.69769 5.78323 6.01323 6.02975 6.14212 6.18379 6.22770 6.23389 6.27348 6.42615 6.53117 6.70135 6.76297 6.79657 6.89342 7.07066 7.43795 7.73354 7.83200 8.47808 8.66694 9.59325 10.18525 10.54336 11.52060 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.003192 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.818809 B = 8770.853928 C =10385.199034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.099 0.901 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.240 4.240 7 H 0.068 0.932 8 C -0.013 4.013 9 N -0.928 5.928 10 Si 0.905 3.095 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.599 5.599 15 C 0.079 3.921 16 C 0.520 3.480 17 O -0.531 6.531 18 C -0.097 4.097 19 C -0.055 4.055 20 C -0.089 4.089 21 C -0.110 4.110 22 C 0.045 3.955 23 C 0.045 3.955 24 C -0.099 4.099 25 O -0.310 6.310 26 C 0.021 3.979 27 C 0.022 3.978 28 O -0.309 6.309 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.020 0.980 34 H 0.387 0.613 35 H 0.254 0.746 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.118 0.882 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 3.466 -18.678 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.117 0.883 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.371 4.371 7 H 0.086 0.914 8 C -0.209 4.209 9 N -0.577 5.577 10 Si 0.736 3.264 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.209 1.209 14 N -0.333 5.333 15 C -0.065 4.065 16 C 0.307 3.693 17 O -0.407 6.407 18 C -0.137 4.137 19 C -0.056 4.056 20 C -0.107 4.107 21 C -0.129 4.129 22 C 0.001 3.999 23 C 0.000 4.000 24 C -0.118 4.118 25 O -0.225 6.225 26 C -0.055 4.055 27 C -0.054 4.054 28 O -0.224 6.224 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.221 0.779 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.157 0.843 42 H 0.152 0.848 43 H 0.147 0.853 44 H 0.136 0.864 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.714 4.053 -18.459 20.413 hybrid contribution 0.764 -0.264 0.483 0.941 sum -6.950 3.789 -17.977 19.642 Atomic orbital electron populations 1.22061 0.95382 1.01927 1.01990 1.21353 0.93074 0.98541 0.84781 0.88296 1.20992 0.87132 0.96677 0.93630 1.42296 0.99692 1.70071 1.25136 1.19202 0.89439 1.29314 0.99137 0.91385 1.24728 0.96415 1.01708 0.98033 1.69685 1.07074 1.50726 1.30168 0.86226 0.79491 0.78950 0.81713 1.21842 1.21818 1.20889 1.47659 1.50934 1.12183 1.22506 1.21742 1.01429 0.82375 1.00904 1.20323 0.77911 0.86965 0.84079 1.90713 1.56612 1.17016 1.76409 1.20654 1.00188 0.98431 0.94388 1.19031 0.93700 0.97496 0.95353 1.20946 0.93021 0.98342 0.98409 1.20404 1.00707 0.95540 0.96200 1.18866 0.88523 0.95624 0.96935 1.18713 0.90103 0.97103 0.94073 1.20142 0.99340 0.97044 0.95281 1.86272 1.43928 1.39220 1.53094 1.23583 0.92580 0.87873 1.01456 1.23574 0.95183 1.00768 0.85904 1.86299 1.41953 1.60152 1.33988 0.92698 0.92402 0.91502 0.95641 0.96258 0.77905 0.93613 0.91649 0.91341 0.91741 0.88380 0.87348 0.84315 0.84758 0.85267 0.86378 0.90579 0.90724 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.17 37.16 0.34 -1.67 16 2 C 0.13 2.18 2.80 -67.93 -0.19 1.99 16 3 H 0.10 1.99 6.90 -51.93 -0.36 1.63 16 4 C 0.14 2.94 5.56 -4.04 -0.02 2.92 16 5 N -0.73 -18.84 5.43 -59.91 -0.33 -19.17 16 6 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 7 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 8 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 9 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 10 Si 0.90 22.62 29.55 -169.99 -5.02 17.60 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 N -0.60 -9.81 2.24 -173.93 -0.39 -10.20 16 15 C 0.08 1.01 9.40 59.85 0.56 1.57 16 16 C 0.52 9.27 7.37 -10.98 -0.08 9.19 16 17 O -0.53 -11.71 15.36 5.56 0.09 -11.62 16 18 C -0.10 -1.35 4.38 -29.04 -0.13 -1.48 16 19 C -0.06 -0.84 4.37 -104.63 -0.46 -1.30 16 20 C -0.09 -1.42 9.69 -39.59 -0.38 -1.81 16 21 C -0.11 -1.68 9.96 -39.43 -0.39 -2.08 16 22 C 0.05 0.68 6.49 -39.14 -0.25 0.43 16 23 C 0.04 0.66 6.49 -39.14 -0.25 0.41 16 24 C -0.10 -1.47 9.61 -39.43 -0.38 -1.85 16 25 O -0.31 -4.08 10.42 -32.86 -0.34 -4.43 16 26 C 0.02 0.19 7.26 37.40 0.27 0.46 16 27 C 0.02 0.19 7.26 37.40 0.27 0.46 16 28 O -0.31 -4.16 10.42 -32.85 -0.34 -4.50 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.67 6.66 -51.92 -0.35 0.32 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.38 7.84 -51.93 -0.41 -0.02 16 34 H 0.39 10.84 7.06 -40.82 -0.29 10.55 16 35 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.07 0.76 6.43 -51.93 -0.33 0.42 16 38 H 0.06 0.62 6.44 -51.93 -0.33 0.29 16 39 H 0.10 1.03 7.34 -51.93 -0.38 0.65 16 40 H 0.11 1.44 8.05 -51.93 -0.42 1.02 16 41 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 44 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -36.11 385.31 -8.21 -44.32 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -7.06 Total: 9.97 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.34 Total: -0.15 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.01 Total: -57.00 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.60 Total: -20.55 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.11 -8.21 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568315917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.074 kcal (2) G-P(sol) polarization free energy of solvation -36.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds