Wall clock time and date at job start Tue Mar 31 2020 17:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46396 * 2 1 4 4 C 1.53004 * 109.47149 * 119.99658 * 2 1 3 5 5 N 1.46498 * 109.46761 * 175.00288 * 4 2 1 6 6 C 1.36937 * 119.99794 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99880 * 0.02562 * 6 5 4 8 8 C 1.38805 * 120.00257 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99777 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00255 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46758 * 90.00559 * 10 8 6 12 12 H 1.48502 * 109.47322 * 210.00152 * 10 8 6 13 13 H 1.48500 * 109.46954 * 330.00551 * 10 8 6 14 14 N 1.46491 * 109.47340 * 240.00076 * 2 1 3 15 15 C 1.46505 * 119.99936 * 299.99895 * 14 2 1 16 16 C 1.34777 * 120.00128 * 119.99678 * 14 2 1 17 17 O 1.21280 * 119.99985 * 359.97438 * 16 14 2 18 18 C 1.50701 * 119.99800 * 180.02562 * 16 14 2 19 19 C 1.50699 * 109.46979 * 179.97438 * 18 16 14 20 20 C 1.38261 * 119.94433 * 89.99687 * 19 18 16 21 21 C 1.38197 * 120.11321 * 180.02562 * 20 19 18 22 22 C 1.38695 * 120.06560 * 0.28535 * 21 20 19 23 23 C 1.38977 * 119.82245 * 359.34197 * 22 21 20 24 24 C 1.38199 * 119.94677 * 269.97744 * 19 18 16 25 25 O 1.36105 * 120.78464 * 180.54739 * 23 22 21 26 26 C 1.43180 * 116.71241 * 342.97675 * 25 23 22 27 27 C 1.53464 * 108.25991 * 46.17612 * 26 25 23 28 28 O 1.36102 * 119.39637 * 179.90769 * 22 21 20 29 29 H 1.09002 * 109.47574 * 60.00351 * 1 2 3 30 30 H 1.09008 * 109.46873 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47882 * 299.99924 * 1 2 3 32 32 H 1.08996 * 109.47106 * 295.00382 * 4 2 1 33 33 H 1.08998 * 109.46688 * 55.00086 * 4 2 1 34 34 H 0.96998 * 120.00092 * 0.02562 * 5 4 2 35 35 H 0.97004 * 120.00077 * 179.97438 * 9 8 6 36 36 H 1.09008 * 109.46908 * 269.99759 * 15 14 2 37 37 H 1.08995 * 109.47355 * 29.99913 * 15 14 2 38 38 H 1.09004 * 109.47238 * 150.00181 * 15 14 2 39 39 H 1.08995 * 109.47360 * 60.00224 * 18 16 14 40 40 H 1.08997 * 109.47399 * 299.99564 * 18 16 14 41 41 H 1.07998 * 119.93806 * 0.03139 * 20 19 18 42 42 H 1.08002 * 119.96327 * 180.02562 * 21 20 19 43 43 H 1.08006 * 119.96196 * 359.97438 * 24 19 18 44 44 H 1.09006 * 109.70387 * 165.86302 * 26 25 23 45 45 H 1.08996 * 109.70852 * 286.47737 * 26 25 23 46 46 H 1.09002 * 109.70898 * 59.97294 * 27 26 25 47 47 H 1.09001 * 109.71016 * 180.59990 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1906 6 6 4.1839 -1.4377 2.2073 7 1 3.6469 -1.8428 3.0522 8 6 5.5672 -1.5377 2.1515 9 7 6.2217 -1.0444 1.1216 10 14 6.5001 -2.3725 3.5380 11 1 6.6318 -3.8220 3.2435 12 1 7.8508 -1.7675 3.6605 13 1 5.7592 -2.1915 4.8122 14 7 2.0184 -0.6905 -1.1961 15 6 1.6645 -2.0932 -1.4279 16 6 2.7932 -0.0355 -2.0833 17 8 3.0857 1.1258 -1.8916 18 6 3.2951 -0.7458 -3.3140 19 6 4.1318 0.2016 -4.1346 20 6 5.4935 0.2897 -3.9118 21 6 6.2641 1.1577 -4.6619 22 6 5.6721 1.9472 -5.6365 23 6 4.3047 1.8530 -5.8659 24 6 3.5369 0.9805 -5.1089 25 8 3.7054 2.6104 -6.8248 26 6 4.4410 3.7410 -7.3051 27 6 5.8816 3.2930 -7.5865 28 8 6.4436 2.7986 -6.3660 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7197 1.2952 34 1 3.9824 -0.4620 0.4319 35 1 7.1884 -1.1139 1.0827 36 1 2.4159 -2.7377 -0.9716 37 1 0.6905 -2.3003 -0.9846 38 1 1.6239 -2.2853 -2.5002 39 1 2.4471 -1.0880 -3.9072 40 1 3.9005 -1.6024 -3.0177 41 1 5.9557 -0.3209 -3.1503 42 1 7.3276 1.2242 -4.4861 43 1 2.4731 0.9092 -5.2814 44 1 3.9857 4.1127 -8.2231 45 1 4.4413 4.5270 -6.5500 46 1 5.8808 2.5029 -8.3374 47 1 6.4668 4.1402 -7.9442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568315917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:10 Heat of formation + Delta-G solvation = -87.422108 kcal Electronic energy + Delta-G solvation = -29287.549032 eV Core-core repulsion = 25242.730302 eV Total energy + Delta-G solvation = -4044.818730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.23750 -41.06527 -38.96078 -38.23498 -37.65264 -35.79408 -33.99562 -33.04957 -31.90546 -31.72290 -30.25722 -28.03511 -27.69761 -27.30007 -25.47110 -24.48616 -23.81699 -22.55410 -21.34501 -20.04587 -19.50408 -19.06901 -18.33244 -18.21483 -18.04569 -17.08263 -16.61577 -16.54384 -16.36360 -16.00540 -15.49913 -15.37911 -15.31912 -15.25967 -14.96673 -14.85443 -14.54692 -14.11964 -14.05313 -13.75936 -13.70182 -13.28183 -13.09188 -13.04428 -12.90647 -12.76194 -12.66098 -12.57279 -12.44194 -12.12455 -12.08899 -11.98432 -11.76877 -11.68755 -11.44404 -10.97017 -10.71262 -9.61146 -9.49318 -9.02354 -8.97171 -7.91130 -5.20894 0.22866 0.30170 1.46256 1.48536 1.56823 1.75709 2.00260 2.18040 2.29216 2.56643 2.71267 3.29918 3.41217 3.66547 3.68023 3.75052 3.94382 4.00072 4.08378 4.10832 4.15735 4.29106 4.34141 4.36393 4.41333 4.48994 4.51383 4.56906 4.59477 4.62767 4.78734 4.82496 4.89341 4.92928 4.95028 5.09385 5.10489 5.13575 5.19694 5.35034 5.49536 5.55816 5.62855 5.74613 5.89434 6.28492 6.40784 6.55190 7.32528 7.35588 8.11864 8.35447 9.31539 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.003192 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.818809 B = 8770.853928 C =10385.199034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.129 3.871 3 H 0.062 0.938 4 C 0.142 3.858 5 N -0.741 5.741 6 C -0.244 4.244 7 H 0.076 0.924 8 C -0.075 4.075 9 N -0.965 5.965 10 Si 0.973 3.027 11 H -0.284 1.284 12 H -0.299 1.299 13 H -0.271 1.271 14 N -0.599 5.599 15 C 0.074 3.926 16 C 0.510 3.490 17 O -0.585 6.585 18 C -0.088 4.088 19 C -0.063 4.063 20 C -0.110 4.110 21 C -0.124 4.124 22 C 0.038 3.962 23 C 0.040 3.960 24 C -0.105 4.105 25 O -0.320 6.320 26 C 0.013 3.987 27 C 0.014 3.986 28 O -0.326 6.326 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.025 0.975 33 H 0.037 0.963 34 H 0.372 0.628 35 H 0.249 0.751 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.141 0.859 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.159 0.841 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.905 2.758 -19.768 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 H 0.081 0.919 4 C 0.015 3.985 5 N -0.384 5.384 6 C -0.376 4.376 7 H 0.094 0.906 8 C -0.267 4.267 9 N -0.616 5.616 10 Si 0.802 3.198 11 H -0.210 1.210 12 H -0.226 1.226 13 H -0.196 1.196 14 N -0.331 5.331 15 C -0.068 4.068 16 C 0.299 3.701 17 O -0.465 6.465 18 C -0.127 4.127 19 C -0.064 4.064 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.007 4.007 23 C -0.005 4.005 24 C -0.124 4.124 25 O -0.235 6.235 26 C -0.061 4.061 27 C -0.060 4.060 28 O -0.241 6.241 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.204 0.796 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.159 0.841 40 H 0.130 0.870 41 H 0.142 0.858 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.177 0.823 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.771 3.310 -19.539 22.096 hybrid contribution 1.341 0.050 0.769 1.547 sum -8.430 3.360 -18.770 20.849 Atomic orbital electron populations 1.21964 0.91346 1.03696 1.02996 1.21220 0.95980 0.96222 0.84057 0.91935 1.21197 0.84211 0.97798 0.95284 1.42509 1.01974 1.69770 1.24143 1.19619 0.89962 1.28411 0.99604 0.90586 1.25567 0.97483 1.03113 1.00562 1.69867 1.06832 1.52629 1.32274 0.85146 0.77540 0.77904 0.79164 1.21044 1.22626 1.19604 1.47804 1.50237 1.13489 1.21576 1.21981 1.01692 0.79584 1.03506 1.21027 0.77296 0.86589 0.85170 1.90682 1.58530 1.19481 1.77795 1.20684 1.01430 0.97622 0.93010 1.19185 0.93433 0.98057 0.95726 1.20961 0.93955 0.99114 0.98768 1.20535 1.01096 0.95947 0.96684 1.18936 0.88962 0.95728 0.97060 1.18864 0.90078 0.97254 0.94327 1.20375 1.00217 0.96759 0.95027 1.86252 1.44749 1.40090 1.52415 1.23967 0.92856 0.86425 1.02901 1.23985 0.95556 1.02207 0.84273 1.86265 1.42597 1.59727 1.35530 0.91784 0.90143 0.90485 0.95727 0.94487 0.79620 0.94244 0.94038 0.88918 0.88063 0.84137 0.86960 0.85798 0.84292 0.83493 0.82307 0.91025 0.89749 0.82863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.17 71.98 0.66 -2.66 16 2 C 0.13 4.43 2.80 44.99 0.13 4.55 16 3 H 0.06 2.61 6.90 -2.38 -0.02 2.60 16 4 C 0.14 5.74 5.56 86.38 0.48 6.22 16 5 N -0.74 -39.09 5.43 -343.46 -1.87 -40.96 16 6 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 7 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 8 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 9 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 10 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 14 N -0.60 -19.17 2.24 -822.57 -1.85 -21.02 16 15 C 0.07 1.73 9.40 127.77 1.20 2.93 16 16 C 0.51 18.39 7.37 87.66 0.65 19.04 16 17 O -0.58 -26.95 15.36 -3.03 -0.05 -26.99 16 18 C -0.09 -2.41 4.38 29.10 0.13 -2.28 16 19 C -0.06 -1.97 4.37 -19.87 -0.09 -2.06 16 20 C -0.11 -3.74 9.69 22.27 0.22 -3.52 16 21 C -0.12 -4.03 9.96 22.37 0.22 -3.81 16 22 C 0.04 1.17 6.49 22.56 0.15 1.32 16 23 C 0.04 1.18 6.49 22.56 0.15 1.32 16 24 C -0.11 -3.08 9.61 22.37 0.22 -2.87 16 25 O -0.32 -8.01 10.42 -82.51 -0.86 -8.87 16 26 C 0.01 0.21 7.26 72.14 0.52 0.74 16 27 C 0.01 0.23 7.26 72.14 0.52 0.75 16 28 O -0.33 -8.68 10.42 -82.47 -0.86 -9.54 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.53 6.66 -2.38 -0.02 1.52 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.04 1.38 7.84 -2.39 -0.02 1.37 16 34 H 0.37 21.66 7.06 -92.71 -0.65 21.00 16 35 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.09 1.71 6.43 -2.39 -0.02 1.69 16 38 H 0.10 1.60 6.44 -2.38 -0.02 1.59 16 39 H 0.14 2.55 7.34 -2.39 -0.02 2.53 16 40 H 0.11 2.98 8.05 -2.39 -0.02 2.96 16 41 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 42 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 44 H 0.16 1.21 8.14 -2.38 -0.02 1.20 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.15 1.28 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -82.11 385.31 3.62 -78.50 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: 0.33 Total: 37.74 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 6.45 Total: 2.67 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -3.43 Total: -122.58 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.77 Total: -45.40 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -82.11 3.62 -78.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568315917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.923 kcal (2) G-P(sol) polarization free energy of solvation -82.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds