Wall clock time and date at job start Tue Mar 31 2020 18:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47007 * 2 1 4 4 C 1.50701 * 109.47335 * 239.99865 * 2 1 3 5 5 O 1.21280 * 119.99773 * 253.72365 * 4 2 1 6 6 N 1.34772 * 120.00120 * 73.71847 * 4 2 1 7 7 C 1.46503 * 119.99725 * 355.09980 * 6 4 2 8 8 C 1.46492 * 120.00259 * 175.09770 * 6 4 2 9 9 C 1.50702 * 109.47246 * 90.00157 * 8 6 4 10 10 C 1.38240 * 119.99883 * 269.73552 * 9 8 6 11 11 C 1.38239 * 119.99486 * 179.76688 * 10 9 8 12 12 C 1.38234 * 120.00172 * 0.47531 * 11 10 9 13 13 C 1.38234 * 120.00098 * 359.79665 * 12 11 10 14 14 C 1.38233 * 119.99893 * 89.99909 * 9 8 6 15 15 N 1.46502 * 109.46954 * 119.99637 * 2 1 3 16 16 C 1.36937 * 120.00023 * 56.27605 * 15 2 1 17 17 H 1.07995 * 119.99698 * 323.12902 * 16 15 2 18 18 C 1.38813 * 119.99992 * 143.13105 * 16 15 2 19 19 N 1.31617 * 119.99820 * 339.38741 * 18 16 15 20 20 Si 1.86804 * 120.00035 * 159.38571 * 18 16 15 21 21 H 1.48497 * 109.46964 * 90.00027 * 20 18 16 22 22 H 1.48494 * 109.46878 * 210.00032 * 20 18 16 23 23 H 1.48502 * 109.46844 * 329.99882 * 20 18 16 24 24 C 1.46500 * 119.99997 * 236.27059 * 15 2 1 25 25 C 1.52999 * 109.47212 * 90.00294 * 24 15 2 26 26 C 1.50698 * 109.47421 * 179.97438 * 25 24 15 27 27 O 1.20821 * 120.00315 * 359.97438 * 26 25 24 28 28 O 1.34235 * 119.99871 * 180.02562 * 26 25 24 29 29 H 1.09002 * 109.46962 * 187.82199 * 1 2 3 30 30 H 1.09004 * 109.47037 * 307.81707 * 1 2 3 31 31 H 1.08994 * 109.47282 * 67.82264 * 1 2 3 32 32 H 1.09001 * 109.46810 * 92.89411 * 7 6 4 33 33 H 1.08998 * 109.46771 * 212.89156 * 7 6 4 34 34 H 1.08997 * 109.47345 * 332.89409 * 7 6 4 35 35 H 1.09001 * 109.47583 * 209.99966 * 8 6 4 36 36 H 1.09001 * 109.47063 * 330.00330 * 8 6 4 37 37 H 1.07992 * 120.00118 * 359.97438 * 10 9 8 38 38 H 1.07997 * 119.99683 * 180.24851 * 11 10 9 39 39 H 1.08002 * 119.99504 * 179.77090 * 12 11 10 40 40 H 1.08003 * 120.00041 * 179.97438 * 13 12 11 41 41 H 1.07993 * 120.00162 * 0.02562 * 14 9 8 42 42 H 0.97010 * 119.99589 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.47472 * 210.00236 * 24 15 2 44 44 H 1.09003 * 109.47392 * 330.00289 * 24 15 2 45 45 H 1.09008 * 109.47324 * 300.00218 * 25 24 15 46 46 H 1.09003 * 109.46946 * 59.99722 * 25 24 15 47 47 H 0.96704 * 116.99693 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5121 -1.8204 -1.1364 6 7 1.9485 -0.1124 -2.4353 7 6 1.2728 1.1809 -2.5657 8 6 2.5330 -0.7556 -3.6146 9 6 1.5035 -1.6436 -4.2647 10 6 1.3967 -2.9692 -3.8873 11 6 0.4490 -3.7824 -4.4802 12 6 -0.3852 -3.2726 -5.4574 13 6 -0.2747 -1.9485 -5.8388 14 6 0.6695 -1.1339 -5.2422 15 7 2.0183 -0.6905 1.1962 16 6 1.6257 -1.9772 1.4522 17 1 0.6191 -2.2911 1.2190 18 6 2.5217 -2.8779 2.0116 19 7 3.8164 -2.6565 1.9275 20 14 1.8899 -4.4043 2.8838 21 1 1.7650 -5.5162 1.9075 22 1 2.8416 -4.7914 3.9559 23 1 0.5607 -4.1184 3.4813 24 6 2.9266 -0.0046 2.1185 25 6 2.1118 0.7279 3.1864 26 6 3.0462 1.4330 4.1355 27 8 4.2412 1.3571 3.9747 28 8 2.5507 2.1447 5.1602 29 1 -0.3633 -1.0181 0.1399 30 1 -0.3633 0.6301 0.8119 31 1 -0.3633 0.3879 -0.9516 32 1 2.0040 1.9839 -2.4714 33 1 0.7899 1.2418 -3.5409 34 1 0.5221 1.2793 -1.7816 35 1 2.8539 0.0078 -4.3234 36 1 3.3918 -1.3554 -3.3131 37 1 2.0514 -3.3685 -3.1269 38 1 0.3629 -4.8169 -4.1825 39 1 -1.1231 -3.9090 -5.9232 40 1 -0.9263 -1.5503 -6.6026 41 1 0.7560 -0.0995 -5.5403 42 1 4.4425 -3.2862 2.3181 43 1 3.5788 -0.7353 2.5969 44 1 3.5309 0.7147 1.5656 45 1 1.4596 1.4587 2.7080 46 1 1.5076 0.0086 3.7392 47 1 3.1892 2.5795 5.7419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589339587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:41 Heat of formation + Delta-G solvation = -62.626788 kcal Electronic energy + Delta-G solvation = -29815.561268 eV Core-core repulsion = 25771.817743 eV Total energy + Delta-G solvation = -4043.743524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.74457 -39.59138 -38.52542 -36.08617 -35.52910 -34.74790 -32.44277 -31.44266 -31.01805 -30.71109 -28.43978 -26.90064 -25.70906 -24.86374 -23.40525 -22.35434 -21.82252 -20.83990 -20.02193 -18.55217 -17.68315 -16.78357 -16.67518 -15.91302 -15.83091 -15.55650 -15.38215 -15.24420 -14.73544 -14.63259 -14.37622 -13.70730 -13.50135 -13.25559 -13.12230 -12.83724 -12.75698 -12.46191 -12.34888 -12.31534 -12.26750 -11.70226 -11.61065 -11.35712 -11.13879 -11.07942 -10.97271 -10.81696 -10.76736 -10.71129 -10.61974 -10.13554 -10.00111 -9.95037 -9.66634 -8.84844 -8.74277 -8.46274 -8.36088 -8.04540 -6.59651 -5.69307 -3.25993 1.46807 1.58485 2.74751 3.41757 3.46981 3.49868 3.51961 3.62959 3.72003 4.11135 4.54852 4.93847 5.00698 5.13505 5.20853 5.28118 5.32050 5.42784 5.46960 5.61081 5.65182 5.69550 5.75031 5.81318 5.84867 5.88709 5.94004 5.99740 6.05659 6.17533 6.22935 6.26842 6.37073 6.47318 6.51591 6.58489 6.71095 6.84787 6.86424 6.90148 6.98220 7.07733 7.19004 7.72448 7.90730 8.08718 8.37094 8.55298 9.16646 9.29697 9.82986 10.36478 11.33366 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.003805 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.108600 B = 7356.310507 C = 8749.753874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.068 0.932 4 C 0.486 3.514 5 O -0.475 6.475 6 N -0.631 5.631 7 C 0.072 3.928 8 C 0.155 3.845 9 C -0.096 4.096 10 C -0.089 4.089 11 C -0.124 4.124 12 C -0.125 4.125 13 C -0.130 4.130 14 C -0.113 4.113 15 N -0.554 5.554 16 C -0.249 4.249 17 H 0.063 0.937 18 C 0.024 3.976 19 N -0.871 5.871 20 Si 0.891 3.109 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.158 3.842 25 C -0.130 4.130 26 C 0.477 3.523 27 O -0.516 6.516 28 O -0.529 6.529 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.252 0.748 43 H 0.110 0.890 44 H 0.032 0.968 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.366 8.759 -9.383 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.086 0.914 4 C 0.272 3.728 5 O -0.343 6.343 6 N -0.370 5.370 7 C -0.071 4.071 8 C 0.032 3.968 9 C -0.098 4.098 10 C -0.108 4.108 11 C -0.142 4.142 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.131 4.131 15 N -0.272 5.272 16 C -0.378 4.378 17 H 0.080 0.920 18 C -0.178 4.178 19 N -0.512 5.512 20 Si 0.721 3.279 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.032 3.968 25 C -0.170 4.170 26 C 0.319 3.681 27 O -0.404 6.404 28 O -0.340 6.340 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.150 0.850 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.063 0.937 43 H 0.128 0.872 44 H 0.050 0.950 45 H 0.104 0.896 46 H 0.122 0.878 47 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -6.853 7.783 -9.516 14.075 hybrid contribution 0.088 -0.476 0.650 0.811 sum -6.765 7.307 -8.866 13.333 Atomic orbital electron populations 1.22250 0.96164 1.03131 1.00045 1.20555 0.94147 0.94935 0.86338 0.91438 1.22551 0.79111 0.87396 0.83776 1.90743 1.41014 1.18148 1.84414 1.48445 1.59536 1.21579 1.07446 1.21921 0.97389 0.85215 1.02574 1.20191 0.94278 0.95093 0.87240 1.20371 0.98308 0.94819 0.96272 1.21355 0.97853 0.93381 0.98181 1.21199 0.96095 0.99989 0.96875 1.21097 0.99457 0.95664 0.98090 1.21032 0.99035 0.94219 1.00545 1.20985 0.96001 0.99218 0.96936 1.43780 1.54500 1.11930 1.16988 1.18749 0.94268 0.86259 1.38534 0.91958 1.25138 0.94790 0.96716 1.01128 1.69984 1.00437 1.36443 1.44342 0.86500 0.78155 0.83875 0.79387 1.21330 1.21659 1.20369 1.20830 0.91057 0.95557 0.89398 1.22341 0.98860 0.99377 0.96433 1.24213 0.89243 0.75285 0.79342 1.90695 1.17952 1.59292 1.72455 1.84630 1.45720 1.63064 1.40603 0.91484 0.92457 0.93115 0.93574 0.92359 0.89927 0.90880 0.89517 0.84992 0.86322 0.86625 0.86598 0.86624 0.93737 0.87216 0.94997 0.89627 0.87827 0.74509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.83 37.16 0.33 -2.28 16 2 C 0.15 2.95 2.34 -69.08 -0.16 2.79 16 3 H 0.07 1.18 7.40 -51.93 -0.38 0.79 16 4 C 0.49 10.05 6.92 -10.99 -0.08 9.98 16 5 O -0.47 -12.13 14.05 5.56 0.08 -12.05 16 6 N -0.63 -10.14 2.86 -182.96 -0.52 -10.66 16 7 C 0.07 0.85 9.87 59.85 0.59 1.44 16 8 C 0.16 2.32 5.51 -5.20 -0.03 2.29 16 9 C -0.10 -1.42 5.46 -104.62 -0.57 -1.99 16 10 C -0.09 -1.46 9.58 -39.58 -0.38 -1.84 16 11 C -0.12 -1.77 10.05 -39.58 -0.40 -2.16 16 12 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 13 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 14 C -0.11 -1.40 9.70 -39.58 -0.38 -1.78 16 15 N -0.55 -12.92 2.24 -166.98 -0.37 -13.29 16 16 C -0.25 -6.52 7.39 -15.06 -0.11 -6.63 16 17 H 0.06 1.66 6.54 -52.49 -0.34 1.32 16 18 C 0.02 0.66 4.98 -17.43 -0.09 0.57 16 19 N -0.87 -25.54 11.37 55.49 0.63 -24.91 16 20 Si 0.89 21.86 29.60 -169.99 -5.03 16.83 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.16 3.60 4.54 -4.04 -0.02 3.58 16 25 C -0.13 -2.38 6.13 -27.88 -0.17 -2.55 16 26 C 0.48 8.43 8.33 36.00 0.30 8.73 16 27 O -0.52 -10.86 16.74 -18.75 -0.31 -11.17 16 28 O -0.53 -7.32 13.42 -39.27 -0.53 -7.85 16 29 H 0.07 1.29 6.54 -51.93 -0.34 0.95 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.71 5.46 -51.93 -0.28 0.42 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.08 0.95 4.13 -51.93 -0.21 0.73 16 35 H 0.07 0.87 8.02 -51.93 -0.42 0.45 16 36 H 0.09 1.50 7.44 -51.93 -0.39 1.11 16 37 H 0.13 2.49 7.41 -52.49 -0.39 2.10 16 38 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.11 2.96 5.39 -51.93 -0.28 2.68 16 44 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 45 H 0.09 1.36 8.14 -51.92 -0.42 0.93 16 46 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 47 H 0.40 3.67 9.10 45.56 0.41 4.09 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -34.37 387.89 -8.15 -42.52 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.97 Total: 8.44 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -1.96 Total: 6.29 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.27 Total: -48.86 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.76 Total: -31.07 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.37 -8.15 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589339587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.104 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds