Wall clock time and date at job start Tue Mar 31 2020 18:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47007 * 2 1 4 4 C 1.50701 * 109.47335 * 239.99865 * 2 1 3 5 5 O 1.21280 * 119.99773 * 253.72365 * 4 2 1 6 6 N 1.34772 * 120.00120 * 73.71847 * 4 2 1 7 7 C 1.46503 * 119.99725 * 355.09980 * 6 4 2 8 8 C 1.46492 * 120.00259 * 175.09770 * 6 4 2 9 9 C 1.50702 * 109.47246 * 90.00157 * 8 6 4 10 10 C 1.38240 * 119.99883 * 269.73552 * 9 8 6 11 11 C 1.38239 * 119.99486 * 179.76688 * 10 9 8 12 12 C 1.38234 * 120.00172 * 0.47531 * 11 10 9 13 13 C 1.38234 * 120.00098 * 359.79665 * 12 11 10 14 14 C 1.38233 * 119.99893 * 89.99909 * 9 8 6 15 15 N 1.46502 * 109.46954 * 119.99637 * 2 1 3 16 16 C 1.36937 * 120.00023 * 56.27605 * 15 2 1 17 17 H 1.07995 * 119.99698 * 323.12902 * 16 15 2 18 18 C 1.38813 * 119.99992 * 143.13105 * 16 15 2 19 19 N 1.31617 * 119.99820 * 339.38741 * 18 16 15 20 20 Si 1.86804 * 120.00035 * 159.38571 * 18 16 15 21 21 H 1.48497 * 109.46964 * 90.00027 * 20 18 16 22 22 H 1.48494 * 109.46878 * 210.00032 * 20 18 16 23 23 H 1.48502 * 109.46844 * 329.99882 * 20 18 16 24 24 C 1.46500 * 119.99997 * 236.27059 * 15 2 1 25 25 C 1.52999 * 109.47212 * 90.00294 * 24 15 2 26 26 C 1.50698 * 109.47421 * 179.97438 * 25 24 15 27 27 O 1.20821 * 120.00315 * 359.97438 * 26 25 24 28 28 O 1.34235 * 119.99871 * 180.02562 * 26 25 24 29 29 H 1.09002 * 109.46962 * 187.82199 * 1 2 3 30 30 H 1.09004 * 109.47037 * 307.81707 * 1 2 3 31 31 H 1.08994 * 109.47282 * 67.82264 * 1 2 3 32 32 H 1.09001 * 109.46810 * 92.89411 * 7 6 4 33 33 H 1.08998 * 109.46771 * 212.89156 * 7 6 4 34 34 H 1.08997 * 109.47345 * 332.89409 * 7 6 4 35 35 H 1.09001 * 109.47583 * 209.99966 * 8 6 4 36 36 H 1.09001 * 109.47063 * 330.00330 * 8 6 4 37 37 H 1.07992 * 120.00118 * 359.97438 * 10 9 8 38 38 H 1.07997 * 119.99683 * 180.24851 * 11 10 9 39 39 H 1.08002 * 119.99504 * 179.77090 * 12 11 10 40 40 H 1.08003 * 120.00041 * 179.97438 * 13 12 11 41 41 H 1.07993 * 120.00162 * 0.02562 * 14 9 8 42 42 H 0.97010 * 119.99589 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.47472 * 210.00236 * 24 15 2 44 44 H 1.09003 * 109.47392 * 330.00289 * 24 15 2 45 45 H 1.09008 * 109.47324 * 300.00218 * 25 24 15 46 46 H 1.09003 * 109.46946 * 59.99722 * 25 24 15 47 47 H 0.96704 * 116.99693 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5121 -1.8204 -1.1364 6 7 1.9485 -0.1124 -2.4353 7 6 1.2728 1.1809 -2.5657 8 6 2.5330 -0.7556 -3.6146 9 6 1.5035 -1.6436 -4.2647 10 6 1.3967 -2.9692 -3.8873 11 6 0.4490 -3.7824 -4.4802 12 6 -0.3852 -3.2726 -5.4574 13 6 -0.2747 -1.9485 -5.8388 14 6 0.6695 -1.1339 -5.2422 15 7 2.0183 -0.6905 1.1962 16 6 1.6257 -1.9772 1.4522 17 1 0.6191 -2.2911 1.2190 18 6 2.5217 -2.8779 2.0116 19 7 3.8164 -2.6565 1.9275 20 14 1.8899 -4.4043 2.8838 21 1 1.7650 -5.5162 1.9075 22 1 2.8416 -4.7914 3.9559 23 1 0.5607 -4.1184 3.4813 24 6 2.9266 -0.0046 2.1185 25 6 2.1118 0.7279 3.1864 26 6 3.0462 1.4330 4.1355 27 8 4.2412 1.3571 3.9747 28 8 2.5507 2.1447 5.1602 29 1 -0.3633 -1.0181 0.1399 30 1 -0.3633 0.6301 0.8119 31 1 -0.3633 0.3879 -0.9516 32 1 2.0040 1.9839 -2.4714 33 1 0.7899 1.2418 -3.5409 34 1 0.5221 1.2793 -1.7816 35 1 2.8539 0.0078 -4.3234 36 1 3.3918 -1.3554 -3.3131 37 1 2.0514 -3.3685 -3.1269 38 1 0.3629 -4.8169 -4.1825 39 1 -1.1231 -3.9090 -5.9232 40 1 -0.9263 -1.5503 -6.6026 41 1 0.7560 -0.0995 -5.5403 42 1 4.4425 -3.2862 2.3181 43 1 3.5788 -0.7353 2.5969 44 1 3.5309 0.7147 1.5656 45 1 1.4596 1.4587 2.7080 46 1 1.5076 0.0086 3.7392 47 1 3.1892 2.5795 5.7419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589339587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:40 Heat of formation + Delta-G solvation = -85.109901 kcal Electronic energy + Delta-G solvation = -29816.536208 eV Core-core repulsion = 25771.817743 eV Total energy + Delta-G solvation = -4044.718465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.15874 -40.92535 -39.76781 -37.66259 -36.92708 -36.24594 -34.02437 -33.19218 -32.29957 -31.74645 -30.06911 -27.98960 -27.12864 -26.61615 -24.87912 -23.40426 -23.26064 -22.09437 -21.56694 -20.07231 -19.09603 -18.36653 -17.77332 -17.45085 -17.30276 -17.16590 -16.80668 -16.38638 -16.33682 -15.82457 -15.67506 -15.38282 -15.07504 -14.62244 -14.27630 -14.19885 -14.02448 -13.93374 -13.74786 -13.51231 -13.34775 -13.27084 -12.93118 -12.85772 -12.81425 -12.61496 -12.48767 -12.44500 -12.22246 -11.99830 -11.95384 -11.82192 -11.77994 -11.48417 -11.44820 -10.47958 -10.29292 -9.79104 -9.65283 -9.35186 -8.52584 -7.73771 -5.31876 0.42052 0.53009 1.34147 1.42580 1.44980 1.52657 2.13324 2.19922 2.40246 2.57147 3.00986 3.40745 3.66146 3.85561 3.94088 4.10040 4.18948 4.26157 4.30534 4.35702 4.36960 4.44404 4.47645 4.59319 4.61867 4.72143 4.73429 4.79555 4.83110 4.92271 4.93441 5.10125 5.14092 5.16394 5.20141 5.28196 5.50770 5.58367 5.64676 5.68229 5.75870 5.78620 5.84631 5.90161 6.15883 6.49354 6.72623 7.12036 7.24006 7.71128 7.92095 8.38617 9.25356 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.003805 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.108600 B = 7356.310507 C = 8749.753874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.146 3.854 3 H 0.094 0.906 4 C 0.477 3.523 5 O -0.541 6.541 6 N -0.624 5.624 7 C 0.064 3.936 8 C 0.156 3.844 9 C -0.108 4.108 10 C -0.123 4.123 11 C -0.140 4.140 12 C -0.123 4.123 13 C -0.123 4.123 14 C -0.105 4.105 15 N -0.568 5.568 16 C -0.227 4.227 17 H 0.057 0.943 18 C -0.033 4.033 19 N -0.910 5.910 20 Si 0.940 3.060 21 H -0.300 1.300 22 H -0.295 1.295 23 H -0.260 1.260 24 C 0.162 3.838 25 C -0.118 4.118 26 C 0.488 3.512 27 O -0.557 6.557 28 O -0.512 6.512 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.144 0.856 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.241 0.759 43 H 0.065 0.935 44 H 0.023 0.977 45 H 0.121 0.879 46 H 0.100 0.900 47 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.750 12.194 -11.223 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.036 3.964 3 H 0.112 0.888 4 C 0.264 3.736 5 O -0.415 6.415 6 N -0.361 5.361 7 C -0.078 4.078 8 C 0.033 3.967 9 C -0.109 4.109 10 C -0.142 4.142 11 C -0.158 4.158 12 C -0.141 4.141 13 C -0.140 4.140 14 C -0.124 4.124 15 N -0.287 5.287 16 C -0.357 4.357 17 H 0.074 0.926 18 C -0.230 4.230 19 N -0.554 5.554 20 Si 0.770 3.230 21 H -0.227 1.227 22 H -0.222 1.222 23 H -0.184 1.184 24 C 0.036 3.964 25 C -0.157 4.157 26 C 0.332 3.668 27 O -0.448 6.448 28 O -0.325 6.325 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.162 0.838 40 H 0.173 0.827 41 H 0.169 0.831 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.042 0.958 45 H 0.139 0.861 46 H 0.118 0.882 47 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -10.300 11.302 -11.361 19.050 hybrid contribution 1.078 -1.404 1.089 2.078 sum -9.222 9.897 -10.273 16.986 Atomic orbital electron populations 1.22138 0.93436 1.01864 1.02809 1.20808 0.95898 0.95354 0.84372 0.88806 1.22745 0.78442 0.86816 0.85641 1.90737 1.44072 1.20976 1.85681 1.48321 1.58666 1.22707 1.06369 1.22247 0.97898 0.82997 1.04609 1.20241 0.93278 0.95791 0.87353 1.20350 0.99177 0.93874 0.97534 1.21183 0.98952 0.95223 0.98818 1.21321 0.96470 1.00076 0.97934 1.21450 0.98991 0.96764 0.96879 1.21514 0.98612 0.93551 1.00368 1.21314 0.94800 1.00937 0.95318 1.43889 1.54398 1.11378 1.19046 1.18824 0.93565 0.87260 1.36081 0.92586 1.25730 0.94937 0.99218 1.03121 1.70164 1.01383 1.37251 1.46589 0.85711 0.78274 0.80992 0.78061 1.22739 1.22188 1.18432 1.20538 0.91228 0.94457 0.90210 1.21981 0.98280 0.99880 0.95600 1.23889 0.88184 0.74977 0.79729 1.90701 1.19546 1.60893 1.73640 1.84536 1.46000 1.62223 1.39716 0.94677 0.90166 0.89895 0.91639 0.89248 0.89346 0.86916 0.93542 0.89642 0.86311 0.83781 0.82749 0.83113 0.95004 0.91701 0.95807 0.86130 0.88151 0.71679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 8.83 71.98 0.64 -3.80 16 2 C 0.15 5.57 2.34 44.24 0.10 5.67 16 3 H 0.09 3.05 7.40 -2.39 -0.02 3.03 16 4 C 0.48 20.13 6.92 87.66 0.61 20.74 16 5 O -0.54 -29.64 14.05 -3.03 -0.04 -29.68 16 6 N -0.62 -19.33 2.86 -851.15 -2.43 -21.76 16 7 C 0.06 1.23 9.87 127.77 1.26 2.49 16 8 C 0.16 4.64 5.51 85.64 0.47 5.11 16 9 C -0.11 -3.14 5.46 -19.86 -0.11 -3.25 16 10 C -0.12 -4.31 9.58 22.27 0.21 -4.09 16 11 C -0.14 -4.10 10.05 22.27 0.22 -3.88 16 12 C -0.12 -2.73 10.05 22.27 0.22 -2.51 16 13 C -0.12 -2.35 10.05 22.27 0.22 -2.12 16 14 C -0.11 -2.22 9.70 22.27 0.22 -2.00 16 15 N -0.57 -26.98 2.24 -682.20 -1.53 -28.50 16 16 C -0.23 -12.32 7.39 84.03 0.62 -11.70 16 17 H 0.06 3.08 6.54 -2.91 -0.02 3.06 16 18 C -0.03 -1.91 4.98 84.86 0.42 -1.49 16 19 N -0.91 -57.02 11.37 21.65 0.25 -56.77 16 20 Si 0.94 47.12 29.60 68.60 2.03 49.16 16 21 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 22 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 23 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 24 C 0.16 7.55 4.54 86.38 0.39 7.94 16 25 C -0.12 -4.16 6.13 29.85 0.18 -3.98 16 26 C 0.49 16.65 8.33 71.24 0.59 17.24 16 27 O -0.56 -23.52 16.74 21.98 0.37 -23.15 16 28 O -0.51 -12.69 13.42 -51.46 -0.69 -13.38 16 29 H 0.03 1.31 6.54 -2.39 -0.02 1.29 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 2.00 5.46 -2.39 -0.01 1.99 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.22 8.09 -2.39 -0.02 1.20 16 34 H 0.09 1.61 4.13 -2.39 -0.01 1.60 16 35 H 0.11 2.38 8.02 -2.39 -0.02 2.37 16 36 H 0.05 1.74 7.44 -2.39 -0.02 1.72 16 37 H 0.09 3.72 7.41 -2.91 -0.02 3.70 16 38 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.24 14.93 8.31 -92.70 -0.77 14.16 16 43 H 0.07 3.70 5.39 -2.39 -0.01 3.69 16 44 H 0.02 1.10 7.91 -2.39 -0.02 1.08 16 45 H 0.12 3.41 8.14 -2.38 -0.02 3.39 16 46 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 47 H 0.42 6.52 9.10 -74.05 -0.67 5.84 16 Total: -1.00 -84.16 387.89 4.56 -79.60 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.32 Total: 24.12 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 6.28 Total: 20.38 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -3.71 Total: -107.04 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: -0.37 Total: -66.22 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.16 kcal Total: -84.16 4.56 -79.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589339587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.509 kcal (2) G-P(sol) polarization free energy of solvation -84.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds