Wall clock time and date at job start Tue Mar 31 2020 18:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47040 * 2 1 4 4 C 1.50703 * 109.47257 * 120.00572 * 2 1 3 5 5 O 1.21276 * 120.00219 * 114.35522 * 4 2 1 6 6 N 1.34772 * 119.99882 * 294.35147 * 4 2 1 7 7 C 1.46504 * 120.00151 * 355.33953 * 6 4 2 8 8 C 1.46495 * 120.00307 * 175.33554 * 6 4 2 9 9 C 1.50706 * 109.47030 * 90.00110 * 8 6 4 10 10 C 1.38232 * 119.99938 * 90.00021 * 9 8 6 11 11 C 1.38239 * 119.99750 * 179.97438 * 10 9 8 12 12 C 1.38227 * 120.00039 * 0.07590 * 11 10 9 13 13 C 1.38231 * 120.00428 * 359.90232 * 12 11 10 14 14 C 1.38230 * 119.99912 * 269.98468 * 9 8 6 15 15 N 1.46504 * 109.46705 * 240.00429 * 2 1 3 16 16 C 1.36933 * 120.00379 * 299.99532 * 15 2 1 17 17 H 1.08006 * 119.99693 * 322.86293 * 16 15 2 18 18 C 1.38815 * 120.00283 * 142.85512 * 16 15 2 19 19 N 1.31617 * 119.99774 * 336.35786 * 18 16 15 20 20 Si 1.86798 * 119.99894 * 156.35706 * 18 16 15 21 21 H 1.48498 * 109.47361 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47005 * 120.00219 * 20 18 16 23 23 H 1.48494 * 109.47005 * 240.00043 * 20 18 16 24 24 C 1.46503 * 119.99918 * 120.00393 * 15 2 1 25 25 C 1.52997 * 109.47255 * 89.59662 * 24 15 2 26 26 C 1.50703 * 109.46937 * 180.02562 * 25 24 15 27 27 O 1.20831 * 120.00014 * 0.02562 * 26 25 24 28 28 O 1.34228 * 120.00127 * 180.02562 * 26 25 24 29 29 H 1.09003 * 109.47408 * 168.88264 * 1 2 3 30 30 H 1.08998 * 109.47006 * 288.87870 * 1 2 3 31 31 H 1.08996 * 109.47639 * 48.88233 * 1 2 3 32 32 H 1.09001 * 109.47248 * 264.38681 * 7 6 4 33 33 H 1.09007 * 109.46918 * 24.37964 * 7 6 4 34 34 H 1.08994 * 109.47432 * 144.38277 * 7 6 4 35 35 H 1.09004 * 109.47062 * 330.00840 * 8 6 4 36 36 H 1.08998 * 109.47586 * 210.00172 * 8 6 4 37 37 H 1.08001 * 119.99902 * 359.70253 * 10 9 8 38 38 H 1.08002 * 119.99742 * 179.97438 * 11 10 9 39 39 H 1.08008 * 119.99896 * 179.97438 * 12 11 10 40 40 H 1.07994 * 120.00145 * 180.02562 * 13 12 11 41 41 H 1.08006 * 120.00339 * 359.97438 * 14 9 8 42 42 H 0.97001 * 119.99691 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.46782 * 209.59684 * 24 15 2 44 44 H 1.08996 * 109.46944 * 329.59310 * 24 15 2 45 45 H 1.08991 * 109.47323 * 299.99743 * 25 24 15 46 46 H 1.08998 * 109.46949 * 60.00122 * 25 24 15 47 47 H 0.96702 * 117.00063 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.6428 -1.7528 1.1220 6 7 1.8032 -0.1876 2.4512 7 6 1.1564 1.1207 2.5782 8 6 2.2009 -0.9275 3.6514 9 6 3.6094 -0.5493 4.0311 10 6 3.8328 0.5097 4.8911 11 6 5.1248 0.8563 5.2397 12 6 6.1934 0.1450 4.7271 13 6 5.9701 -0.9142 3.8675 14 6 4.6780 -1.2614 3.5195 15 7 2.0182 -0.6906 -1.1963 16 6 1.6875 -2.0015 -1.4131 17 1 1.6272 -2.6879 -0.5813 18 6 1.4295 -2.4484 -2.7018 19 7 1.0441 -1.5970 -3.6286 20 14 1.6293 -4.2578 -3.1204 21 1 2.0685 -5.0001 -1.9116 22 1 0.3307 -4.8034 -3.5910 23 1 2.6468 -4.4087 -4.1914 24 6 2.8605 0.0215 -2.1606 25 6 4.3309 -0.1389 -1.7694 26 6 5.1973 0.5941 -2.7611 27 8 4.6905 1.1846 -3.6855 28 8 6.5318 0.5911 -2.6174 29 1 -0.3634 -1.0084 -0.1982 30 1 -0.3633 0.3325 0.9724 31 1 -0.3634 0.6758 -0.7741 32 1 1.9175 1.8934 2.6867 33 1 0.5613 1.3198 1.6868 34 1 0.5091 1.1225 3.4551 35 1 2.1538 -1.9979 3.4507 36 1 1.5253 -0.6814 4.4706 37 1 2.9980 1.0689 5.2872 38 1 5.2993 1.6839 5.9113 39 1 7.2029 0.4161 4.9992 40 1 6.8050 -1.4702 3.4673 41 1 4.5036 -2.0892 2.8481 42 1 0.8642 -1.9092 -4.5293 43 1 2.7022 -0.3925 -3.1565 44 1 2.5978 1.0793 -2.1609 45 1 4.4892 0.2751 -0.7737 46 1 4.5935 -1.1967 -1.7692 47 1 7.0457 1.0748 -3.2785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589339589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:44 Heat of formation + Delta-G solvation = -65.657965 kcal Electronic energy + Delta-G solvation = -30056.536410 eV Core-core repulsion = 26012.661444 eV Total energy + Delta-G solvation = -4043.874966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.86191 -39.64281 -38.69611 -36.09690 -35.53152 -34.98387 -32.53783 -31.50576 -31.06081 -30.81851 -28.42975 -26.99805 -25.80653 -24.83394 -23.48262 -22.46568 -21.92679 -20.94787 -19.93461 -18.72021 -17.66292 -16.93571 -16.74136 -16.04575 -15.98967 -15.51037 -15.43042 -15.29488 -14.80170 -14.60359 -14.38639 -13.94294 -13.61972 -13.34507 -13.17300 -12.88255 -12.73533 -12.54219 -12.45225 -12.33797 -12.29228 -11.79468 -11.69482 -11.41005 -11.16970 -11.09044 -11.04483 -10.89562 -10.80631 -10.76897 -10.51488 -10.10823 -10.00863 -9.88571 -9.70073 -9.03390 -8.85176 -8.65813 -8.40777 -8.26043 -6.63362 -5.78568 -3.31734 1.35597 1.47637 2.76692 3.36842 3.40968 3.42860 3.49668 3.55737 3.60998 3.98204 4.53422 4.83037 4.88848 5.03624 5.08965 5.23475 5.28812 5.34718 5.35910 5.52514 5.54735 5.59723 5.72504 5.77740 5.80928 5.86752 5.90259 5.97267 6.05871 6.08670 6.14610 6.25383 6.41104 6.48648 6.51037 6.59212 6.63235 6.73999 6.84772 6.89529 6.99956 7.07381 7.14149 7.65148 7.85990 7.99285 8.38772 8.52154 8.98049 9.19618 9.78811 10.34429 11.23973 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009875 B = 0.004389 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.681984 B = 6377.613792 C = 7498.077865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 H 0.071 0.929 4 C 0.497 3.503 5 O -0.508 6.508 6 N -0.625 5.625 7 C 0.069 3.931 8 C 0.155 3.845 9 C -0.099 4.099 10 C -0.111 4.111 11 C -0.129 4.129 12 C -0.123 4.123 13 C -0.124 4.124 14 C -0.091 4.091 15 N -0.555 5.555 16 C -0.249 4.249 17 H 0.076 0.924 18 C 0.012 3.988 19 N -0.883 5.883 20 Si 0.891 3.109 21 H -0.274 1.274 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.160 3.840 25 C -0.130 4.130 26 C 0.477 3.523 27 O -0.518 6.518 28 O -0.528 6.528 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.131 0.869 42 H 0.254 0.746 43 H 0.106 0.894 44 H 0.035 0.965 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.188 7.303 15.308 17.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.089 0.911 4 C 0.284 3.716 5 O -0.380 6.380 6 N -0.362 5.362 7 C -0.074 4.074 8 C 0.032 3.968 9 C -0.101 4.101 10 C -0.129 4.129 11 C -0.147 4.147 12 C -0.141 4.141 13 C -0.142 4.142 14 C -0.110 4.110 15 N -0.272 5.272 16 C -0.378 4.378 17 H 0.093 0.907 18 C -0.189 4.189 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.199 1.199 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.033 3.967 25 C -0.170 4.170 26 C 0.320 3.680 27 O -0.406 6.406 28 O -0.339 6.339 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.149 0.851 42 H 0.064 0.936 43 H 0.124 0.876 44 H 0.053 0.947 45 H 0.101 0.899 46 H 0.122 0.878 47 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.049 6.622 15.046 17.196 hybrid contribution 0.695 -0.439 -0.632 1.038 sum 5.745 6.183 14.413 16.702 Atomic orbital electron populations 1.22213 0.95272 1.04038 0.99569 1.20321 0.94240 0.94350 0.86756 0.91140 1.22578 0.78675 0.86109 0.84247 1.90621 1.38733 1.23135 1.85540 1.48210 1.62000 1.20378 1.05584 1.22031 0.97341 0.84606 1.03456 1.20250 0.90862 0.98086 0.87609 1.20346 0.96401 0.96230 0.97094 1.21000 0.96795 0.96878 0.98247 1.21056 0.92845 1.00060 1.00765 1.21119 0.98714 0.96261 0.98049 1.21196 0.97112 0.97639 0.98222 1.21316 0.91994 0.99738 0.97918 1.43613 1.53203 1.10487 1.19915 1.19223 1.41488 0.84219 0.92872 0.90669 1.25186 0.98412 0.97305 0.97961 1.70068 1.45158 1.33977 1.03265 0.86407 0.77404 0.85915 0.78209 1.19868 1.21801 1.21562 1.20840 0.83392 0.94901 0.97522 1.22372 0.97460 1.01174 0.96033 1.24275 0.80347 0.77806 0.85578 1.90682 1.74472 1.42365 1.33089 1.84646 1.21356 1.71645 1.56240 0.90896 0.93552 0.92234 0.93502 0.89174 0.92089 0.89438 0.90564 0.86510 0.86504 0.86537 0.86266 0.85115 0.93645 0.87600 0.94678 0.89930 0.87849 0.74592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.78 37.16 0.33 -2.41 16 2 C 0.16 3.01 2.33 -69.08 -0.16 2.85 16 3 H 0.07 1.24 7.40 -51.93 -0.38 0.86 16 4 C 0.50 9.35 6.90 -10.99 -0.08 9.27 16 5 O -0.51 -11.36 13.20 5.56 0.07 -11.28 16 6 N -0.62 -9.06 2.85 -182.95 -0.52 -9.58 16 7 C 0.07 0.75 9.76 59.85 0.58 1.34 16 8 C 0.16 2.03 5.54 -5.19 -0.03 2.00 16 9 C -0.10 -1.31 5.46 -104.62 -0.57 -1.88 16 10 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 11 C -0.13 -1.39 10.05 -39.59 -0.40 -1.78 16 12 C -0.12 -1.38 10.05 -39.59 -0.40 -1.78 16 13 C -0.12 -1.58 10.05 -39.58 -0.40 -1.97 16 14 C -0.09 -1.32 9.58 -39.58 -0.38 -1.70 16 15 N -0.55 -13.03 2.21 -166.97 -0.37 -13.40 16 16 C -0.25 -6.58 7.52 -15.06 -0.11 -6.69 16 17 H 0.08 2.12 6.43 -52.48 -0.34 1.78 16 18 C 0.01 0.32 4.89 -17.43 -0.09 0.23 16 19 N -0.88 -24.99 11.60 55.49 0.64 -24.34 16 20 Si 0.89 21.88 29.61 -169.99 -5.03 16.84 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.16 3.70 4.55 -4.04 -0.02 3.68 16 25 C -0.13 -2.61 6.14 -27.88 -0.17 -2.79 16 26 C 0.48 8.99 8.33 36.01 0.30 9.29 16 27 O -0.52 -11.16 16.74 -18.75 -0.31 -11.47 16 28 O -0.53 -7.98 13.42 -39.25 -0.53 -8.51 16 29 H 0.07 1.54 7.32 -51.93 -0.38 1.16 16 30 H 0.05 0.66 5.42 -51.93 -0.28 0.38 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.00 4.13 -51.92 -0.21 0.79 16 34 H 0.06 0.52 7.97 -51.93 -0.41 0.10 16 35 H 0.09 1.30 7.43 -51.93 -0.39 0.91 16 36 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.13 2.13 7.40 -52.48 -0.39 1.74 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.11 2.85 5.54 -51.93 -0.29 2.56 16 44 H 0.03 0.78 7.88 -51.93 -0.41 0.37 16 45 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 46 H 0.10 2.21 8.14 -51.93 -0.42 1.79 16 47 H 0.40 4.06 9.10 45.56 0.41 4.48 16 LS Contribution 387.61 15.07 5.84 5.84 Total: -1.00 -33.01 387.61 -8.17 -41.18 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.00 Total: 8.69 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -1.97 Total: 6.03 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.25 Total: -47.32 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.77 Total: -31.26 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.01 -8.17 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589339589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.475 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds