Wall clock time and date at job start Tue Mar 31 2020 18:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47040 * 2 1 4 4 C 1.50703 * 109.47257 * 120.00572 * 2 1 3 5 5 O 1.21276 * 120.00219 * 114.35522 * 4 2 1 6 6 N 1.34772 * 119.99882 * 294.35147 * 4 2 1 7 7 C 1.46504 * 120.00151 * 355.33953 * 6 4 2 8 8 C 1.46495 * 120.00307 * 175.33554 * 6 4 2 9 9 C 1.50706 * 109.47030 * 90.00110 * 8 6 4 10 10 C 1.38232 * 119.99938 * 90.00021 * 9 8 6 11 11 C 1.38239 * 119.99750 * 179.97438 * 10 9 8 12 12 C 1.38227 * 120.00039 * 0.07590 * 11 10 9 13 13 C 1.38231 * 120.00428 * 359.90232 * 12 11 10 14 14 C 1.38230 * 119.99912 * 269.98468 * 9 8 6 15 15 N 1.46504 * 109.46705 * 240.00429 * 2 1 3 16 16 C 1.36933 * 120.00379 * 299.99532 * 15 2 1 17 17 H 1.08006 * 119.99693 * 322.86293 * 16 15 2 18 18 C 1.38815 * 120.00283 * 142.85512 * 16 15 2 19 19 N 1.31617 * 119.99774 * 336.35786 * 18 16 15 20 20 Si 1.86798 * 119.99894 * 156.35706 * 18 16 15 21 21 H 1.48498 * 109.47361 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47005 * 120.00219 * 20 18 16 23 23 H 1.48494 * 109.47005 * 240.00043 * 20 18 16 24 24 C 1.46503 * 119.99918 * 120.00393 * 15 2 1 25 25 C 1.52997 * 109.47255 * 89.59662 * 24 15 2 26 26 C 1.50703 * 109.46937 * 180.02562 * 25 24 15 27 27 O 1.20831 * 120.00014 * 0.02562 * 26 25 24 28 28 O 1.34228 * 120.00127 * 180.02562 * 26 25 24 29 29 H 1.09003 * 109.47408 * 168.88264 * 1 2 3 30 30 H 1.08998 * 109.47006 * 288.87870 * 1 2 3 31 31 H 1.08996 * 109.47639 * 48.88233 * 1 2 3 32 32 H 1.09001 * 109.47248 * 264.38681 * 7 6 4 33 33 H 1.09007 * 109.46918 * 24.37964 * 7 6 4 34 34 H 1.08994 * 109.47432 * 144.38277 * 7 6 4 35 35 H 1.09004 * 109.47062 * 330.00840 * 8 6 4 36 36 H 1.08998 * 109.47586 * 210.00172 * 8 6 4 37 37 H 1.08001 * 119.99902 * 359.70253 * 10 9 8 38 38 H 1.08002 * 119.99742 * 179.97438 * 11 10 9 39 39 H 1.08008 * 119.99896 * 179.97438 * 12 11 10 40 40 H 1.07994 * 120.00145 * 180.02562 * 13 12 11 41 41 H 1.08006 * 120.00339 * 359.97438 * 14 9 8 42 42 H 0.97001 * 119.99691 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.46782 * 209.59684 * 24 15 2 44 44 H 1.08996 * 109.46944 * 329.59310 * 24 15 2 45 45 H 1.08991 * 109.47323 * 299.99743 * 25 24 15 46 46 H 1.08998 * 109.46949 * 60.00122 * 25 24 15 47 47 H 0.96702 * 117.00063 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.6428 -1.7528 1.1220 6 7 1.8032 -0.1876 2.4512 7 6 1.1564 1.1207 2.5782 8 6 2.2009 -0.9275 3.6514 9 6 3.6094 -0.5493 4.0311 10 6 3.8328 0.5097 4.8911 11 6 5.1248 0.8563 5.2397 12 6 6.1934 0.1450 4.7271 13 6 5.9701 -0.9142 3.8675 14 6 4.6780 -1.2614 3.5195 15 7 2.0182 -0.6906 -1.1963 16 6 1.6875 -2.0015 -1.4131 17 1 1.6272 -2.6879 -0.5813 18 6 1.4295 -2.4484 -2.7018 19 7 1.0441 -1.5970 -3.6286 20 14 1.6293 -4.2578 -3.1204 21 1 2.0685 -5.0001 -1.9116 22 1 0.3307 -4.8034 -3.5910 23 1 2.6468 -4.4087 -4.1914 24 6 2.8605 0.0215 -2.1606 25 6 4.3309 -0.1389 -1.7694 26 6 5.1973 0.5941 -2.7611 27 8 4.6905 1.1846 -3.6855 28 8 6.5318 0.5911 -2.6174 29 1 -0.3634 -1.0084 -0.1982 30 1 -0.3633 0.3325 0.9724 31 1 -0.3634 0.6758 -0.7741 32 1 1.9175 1.8934 2.6867 33 1 0.5613 1.3198 1.6868 34 1 0.5091 1.1225 3.4551 35 1 2.1538 -1.9979 3.4507 36 1 1.5253 -0.6814 4.4706 37 1 2.9980 1.0689 5.2872 38 1 5.2993 1.6839 5.9113 39 1 7.2029 0.4161 4.9992 40 1 6.8050 -1.4702 3.4673 41 1 4.5036 -2.0892 2.8481 42 1 0.8642 -1.9092 -4.5293 43 1 2.7022 -0.3925 -3.1565 44 1 2.5978 1.0793 -2.1609 45 1 4.4892 0.2751 -0.7737 46 1 4.5935 -1.1967 -1.7692 47 1 7.0457 1.0748 -3.2785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589339589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:44 Heat of formation + Delta-G solvation = -85.955585 kcal Electronic energy + Delta-G solvation = -30057.416581 eV Core-core repulsion = 26012.661444 eV Total energy + Delta-G solvation = -4044.755137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.25861 -41.01472 -39.79633 -37.69547 -37.00034 -36.35873 -34.06169 -33.32457 -32.31205 -31.72261 -30.10252 -28.00021 -27.07261 -26.68258 -25.01128 -23.39452 -23.31823 -22.13007 -21.56172 -20.15257 -19.18168 -18.47869 -17.83443 -17.49069 -17.39118 -17.13252 -16.75892 -16.54180 -16.35473 -15.82409 -15.65420 -15.40130 -15.19843 -14.64460 -14.30236 -14.22569 -14.03470 -13.97614 -13.76964 -13.53479 -13.39496 -13.28640 -13.20625 -12.90028 -12.75812 -12.72331 -12.52455 -12.37079 -12.11807 -12.05866 -11.89593 -11.85782 -11.78922 -11.60444 -11.54254 -10.57681 -10.37599 -9.76780 -9.67632 -9.42329 -8.57247 -7.82958 -5.38014 0.43194 0.55399 1.23488 1.39844 1.45476 1.56303 1.97047 2.14487 2.28501 2.54859 3.01666 3.27983 3.63244 3.83782 3.95812 4.07752 4.18116 4.21003 4.25756 4.33781 4.36493 4.41787 4.44430 4.55641 4.64785 4.65341 4.74332 4.78360 4.81655 4.86563 4.88870 5.06713 5.15589 5.16560 5.19728 5.22275 5.57533 5.58748 5.60642 5.66700 5.71781 5.76261 5.79543 5.88204 6.17412 6.49480 6.62159 7.04061 7.18333 7.54862 7.84794 8.35234 9.15450 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009875 B = 0.004389 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.681984 B = 6377.613792 C = 7498.077865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.149 3.851 3 H 0.093 0.907 4 C 0.496 3.504 5 O -0.555 6.555 6 N -0.616 5.616 7 C 0.061 3.939 8 C 0.156 3.844 9 C -0.111 4.111 10 C -0.106 4.106 11 C -0.127 4.127 12 C -0.124 4.124 13 C -0.138 4.138 14 C -0.119 4.119 15 N -0.569 5.569 16 C -0.233 4.233 17 H 0.054 0.946 18 C -0.032 4.032 19 N -0.909 5.909 20 Si 0.938 3.062 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.165 3.835 25 C -0.119 4.119 26 C 0.491 3.509 27 O -0.547 6.547 28 O -0.513 6.513 29 H 0.035 0.965 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.115 0.885 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.249 0.751 43 H 0.069 0.931 44 H 0.040 0.960 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.764 9.881 18.194 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.039 3.961 3 H 0.111 0.889 4 C 0.283 3.717 5 O -0.431 6.431 6 N -0.351 5.351 7 C -0.081 4.081 8 C 0.033 3.967 9 C -0.112 4.112 10 C -0.125 4.125 11 C -0.145 4.145 12 C -0.142 4.142 13 C -0.157 4.157 14 C -0.138 4.138 15 N -0.288 5.288 16 C -0.364 4.364 17 H 0.072 0.928 18 C -0.229 4.229 19 N -0.553 5.553 20 Si 0.768 3.232 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.218 1.218 24 C 0.039 3.961 25 C -0.159 4.159 26 C 0.334 3.666 27 O -0.438 6.438 28 O -0.327 6.327 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.141 0.859 41 H 0.114 0.886 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 5.639 9.240 17.986 20.993 hybrid contribution 0.622 -1.146 -1.365 1.887 sum 6.261 8.095 16.622 19.519 Atomic orbital electron populations 1.22106 0.94156 1.01737 1.01885 1.20543 0.95064 0.95073 0.85453 0.88940 1.22246 0.78444 0.85520 0.85507 1.90613 1.40974 1.25115 1.86437 1.48114 1.60911 1.21461 1.04583 1.22306 0.98119 0.82662 1.04981 1.20350 0.92098 0.96460 0.87751 1.20360 0.95646 0.97162 0.98079 1.21310 0.98240 0.95876 0.97039 1.21489 0.92310 1.00326 1.00328 1.21452 1.00444 0.95306 0.97039 1.21340 0.96519 0.98695 0.99096 1.21216 0.93695 0.99992 0.98911 1.43682 1.54011 1.09904 1.21182 1.19069 1.39692 0.85541 0.92067 0.92831 1.25642 0.99362 0.99767 0.98161 1.70159 1.47050 1.34936 1.03166 0.85671 0.77129 0.83011 0.77437 1.20383 1.21544 1.21789 1.20584 0.85166 0.94545 0.95844 1.22021 0.96246 1.00506 0.97157 1.23743 0.81363 0.76976 0.84492 1.90684 1.75362 1.43696 1.34030 1.84553 1.19487 1.71629 1.57028 0.94600 0.89229 0.92703 0.92013 0.89451 0.88503 0.92324 0.86678 0.83460 0.83289 0.84077 0.85939 0.88592 0.94191 0.91349 0.94178 0.88558 0.89542 0.71548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 8.78 71.98 0.63 -4.33 16 2 C 0.15 5.76 2.33 44.24 0.10 5.86 16 3 H 0.09 3.12 7.40 -2.39 -0.02 3.10 16 4 C 0.50 18.67 6.90 87.66 0.60 19.28 16 5 O -0.56 -25.93 13.20 -3.02 -0.04 -25.97 16 6 N -0.62 -16.68 2.85 -851.12 -2.43 -19.11 16 7 C 0.06 1.07 9.76 127.77 1.25 2.32 16 8 C 0.16 3.84 5.54 85.64 0.47 4.32 16 9 C -0.11 -2.77 5.46 -19.87 -0.11 -2.88 16 10 C -0.11 -1.99 9.70 22.27 0.22 -1.77 16 11 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 12 C -0.12 -2.46 10.05 22.27 0.22 -2.23 16 13 C -0.14 -3.48 10.05 22.27 0.22 -3.25 16 14 C -0.12 -3.54 9.58 22.27 0.21 -3.33 16 15 N -0.57 -27.49 2.21 -682.19 -1.51 -28.99 16 16 C -0.23 -12.84 7.52 84.03 0.63 -12.21 16 17 H 0.05 3.18 6.43 -2.91 -0.02 3.16 16 18 C -0.03 -1.81 4.89 84.86 0.42 -1.39 16 19 N -0.91 -53.37 11.60 21.65 0.25 -53.12 16 20 Si 0.94 46.74 29.61 68.60 2.03 48.77 16 21 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 22 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 24 C 0.17 7.83 4.55 86.38 0.39 8.22 16 25 C -0.12 -4.84 6.14 29.85 0.18 -4.66 16 26 C 0.49 18.17 8.33 71.24 0.59 18.76 16 27 O -0.55 -23.45 16.74 21.95 0.37 -23.08 16 28 O -0.51 -14.51 13.42 -51.40 -0.69 -15.20 16 29 H 0.03 1.53 7.32 -2.39 -0.02 1.51 16 30 H 0.09 2.33 5.42 -2.39 -0.01 2.32 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.60 4.13 -2.38 -0.01 1.59 16 34 H 0.10 1.08 7.97 -2.39 -0.02 1.06 16 35 H 0.06 1.79 7.43 -2.39 -0.02 1.77 16 36 H 0.12 1.91 7.89 -2.39 -0.02 1.90 16 37 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.12 2.82 8.06 -2.91 -0.02 2.79 16 41 H 0.10 3.44 7.40 -2.91 -0.02 3.42 16 42 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 43 H 0.07 3.82 5.54 -2.38 -0.01 3.81 16 44 H 0.04 1.81 7.88 -2.39 -0.02 1.79 16 45 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 46 H 0.09 3.83 8.14 -2.39 -0.02 3.81 16 47 H 0.42 7.52 9.10 -74.06 -0.67 6.85 16 Total: -1.00 -76.62 387.61 4.57 -72.05 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.32 Total: 23.94 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 6.27 Total: 20.72 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -3.68 Total: -101.22 kcal Atomic # 8 Polarization: -63.89 SS G_CDS: -0.36 Total: -64.25 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -76.62 4.57 -72.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589339589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.910 kcal (2) G-P(sol) polarization free energy of solvation -76.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds