Wall clock time and date at job start Tue Mar 31 2020 17:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47387 * 2 1 4 4 C 1.52999 * 109.47544 * 240.00130 * 2 1 3 5 5 N 1.46501 * 109.47167 * 185.00477 * 4 2 1 6 6 C 1.36940 * 119.99877 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00054 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99800 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00184 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47064 * 60.00142 * 10 8 6 12 12 H 1.48505 * 109.47257 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46890 * 300.00160 * 10 8 6 14 14 N 1.46499 * 109.47174 * 119.99660 * 2 1 3 15 15 C 1.46504 * 119.99686 * 60.00456 * 14 2 1 16 16 C 1.34776 * 120.00785 * 240.00454 * 14 2 1 17 17 O 1.21288 * 119.99551 * 0.02562 * 16 14 2 18 18 C 1.50694 * 120.00329 * 179.97438 * 16 14 2 19 19 C 1.53002 * 109.46877 * 179.97438 * 18 16 14 20 20 H 1.08997 * 109.70651 * 54.41638 * 19 18 16 21 21 C 1.53478 * 109.70940 * 174.99707 * 19 18 16 22 22 O 1.43171 * 108.23336 * 179.48273 * 21 19 18 23 23 C 1.36108 * 116.69421 * 313.74639 * 22 21 19 24 24 C 1.38705 * 119.39414 * 197.21142 * 23 22 21 25 25 C 1.38189 * 120.06790 * 180.13206 * 24 23 22 26 26 C 1.38254 * 120.11196 * 0.04332 * 25 24 23 27 27 C 1.38193 * 120.11561 * 359.72269 * 26 25 24 28 28 C 1.38701 * 120.06483 * 0.37842 * 27 26 25 29 29 O 1.36111 * 119.39556 * 180.02562 * 28 27 26 30 30 H 1.09008 * 109.46988 * 60.00252 * 1 2 3 31 31 H 1.09008 * 109.46988 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47780 * 300.00199 * 1 2 3 33 33 H 1.09005 * 109.47041 * 304.99920 * 4 2 1 34 34 H 1.08990 * 109.47380 * 64.99720 * 4 2 1 35 35 H 0.97005 * 119.99913 * 359.97438 * 5 4 2 36 36 H 0.97002 * 120.00171 * 180.02562 * 9 8 6 37 37 H 1.09008 * 109.47048 * 269.99807 * 15 14 2 38 38 H 1.09003 * 109.47353 * 29.99885 * 15 14 2 39 39 H 1.09003 * 109.47338 * 150.00483 * 15 14 2 40 40 H 1.08996 * 109.47388 * 60.00248 * 18 16 14 41 41 H 1.09002 * 109.47013 * 299.99720 * 18 16 14 42 42 H 1.09009 * 109.70617 * 59.79809 * 21 19 18 43 43 H 1.09004 * 109.74866 * 299.19437 * 21 19 18 44 44 H 1.07998 * 119.96192 * 0.11359 * 24 23 22 45 45 H 1.08005 * 119.94579 * 180.02562 * 25 24 23 46 46 H 1.08010 * 119.94315 * 179.97438 * 26 25 24 47 47 H 1.07995 * 119.96610 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.1840 -1.4379 -2.2071 7 1 3.6470 -1.8430 -3.0520 8 6 5.5674 -1.5371 -2.1516 9 7 6.2218 -1.0438 -1.1216 10 14 6.5003 -2.3719 -3.5380 11 1 6.2430 -1.6524 -4.8113 12 1 7.9550 -2.3480 -3.2406 13 1 6.0444 -3.7795 -3.6641 14 7 2.0183 -0.6905 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7931 -0.0356 2.0835 17 8 3.0857 1.1257 1.8918 18 6 3.2949 -0.7458 3.3142 19 6 4.1454 0.2157 4.1466 20 1 3.5749 1.1192 4.3614 21 6 4.5558 -0.4619 5.4612 22 8 5.3584 0.4588 6.2082 23 6 6.3422 1.1058 5.5255 24 6 7.3675 1.7209 6.2287 25 6 8.3719 2.3840 5.5498 26 6 8.3574 2.4371 4.1683 27 6 7.3415 1.8223 3.4614 28 6 6.3292 1.1568 4.1368 29 8 5.3356 0.5556 3.4269 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6054 -1.7198 -1.2952 34 1 1.7517 -0.1584 -2.1369 35 1 3.9824 -0.4622 -0.4317 36 1 7.1886 -1.1128 -1.0830 37 1 0.7375 -2.1444 1.9994 38 1 1.5295 -2.5969 0.4708 39 1 2.4628 -2.5818 1.9865 40 1 3.9003 -1.6024 3.0179 41 1 2.4468 -1.0880 3.9074 42 1 5.1321 -1.3619 5.2466 43 1 3.6661 -0.7231 6.0343 44 1 7.3805 1.6818 7.3079 45 1 9.1695 2.8620 6.0992 46 1 9.1437 2.9565 3.6405 47 1 7.3328 1.8649 2.3824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666908952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:16 Heat of formation + Delta-G solvation = -61.203628 kcal Electronic energy + Delta-G solvation = -29814.145956 eV Core-core repulsion = 25770.464144 eV Total energy + Delta-G solvation = -4043.681812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.21219 -39.66903 -37.65214 -37.13237 -36.25314 -33.98473 -33.01850 -31.70270 -30.53889 -30.06759 -29.01660 -27.16488 -26.59455 -25.58531 -23.95175 -22.68077 -22.50037 -21.09432 -20.38676 -18.93903 -18.44567 -17.52808 -17.02819 -16.85028 -16.73232 -15.75450 -15.35818 -15.13706 -14.96374 -14.60964 -14.46618 -14.25556 -13.84069 -13.69052 -13.62110 -13.32997 -13.24970 -12.98206 -12.73187 -12.35561 -12.26916 -12.12384 -11.96181 -11.82151 -11.79188 -11.64518 -11.40578 -11.12953 -10.83362 -10.81325 -10.73821 -10.45769 -10.29204 -10.04565 -9.65537 -9.38458 -8.82788 -8.52470 -8.23754 -7.92616 -6.85649 -5.67975 -2.98256 1.40559 1.44543 2.97776 3.09761 3.23954 3.35840 3.45904 3.50404 3.51831 3.85160 4.17985 4.60467 4.61920 4.66349 4.80098 4.91157 5.05760 5.11666 5.20908 5.27455 5.32127 5.35464 5.41479 5.44684 5.52564 5.58277 5.59400 5.63853 5.67577 5.74715 5.92404 5.99797 6.06754 6.12131 6.20894 6.25131 6.35274 6.39486 6.53004 6.58140 6.74095 6.74516 7.00415 7.04892 7.60207 7.72865 7.75782 8.48483 8.57775 9.59976 10.19031 10.54640 11.53168 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009715 B = 0.004071 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.525885 B = 6876.131291 C = 8963.942864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 H 0.099 0.901 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.244 4.244 7 H 0.067 0.933 8 C -0.010 4.010 9 N -0.924 5.924 10 Si 0.904 3.096 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.287 1.287 14 N -0.598 5.598 15 C 0.081 3.919 16 C 0.520 3.480 17 O -0.527 6.527 18 C -0.133 4.133 19 C 0.070 3.930 20 H 0.090 0.910 21 C 0.025 3.975 22 O -0.309 6.309 23 C 0.038 3.962 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.115 4.115 27 C -0.109 4.109 28 C 0.067 3.933 29 O -0.277 6.277 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.019 0.981 34 H 0.027 0.973 35 H 0.388 0.612 36 H 0.255 0.745 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.120 0.880 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 1.122 16.056 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.376 4.376 7 H 0.085 0.915 8 C -0.207 4.207 9 N -0.572 5.572 10 Si 0.735 3.265 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.214 1.214 14 N -0.332 5.332 15 C -0.062 4.062 16 C 0.308 3.692 17 O -0.403 6.403 18 C -0.173 4.173 19 C 0.012 3.988 20 H 0.108 0.892 21 C -0.050 4.050 22 O -0.223 6.223 23 C -0.007 4.007 24 C -0.136 4.136 25 C -0.145 4.145 26 C -0.133 4.133 27 C -0.128 4.128 28 C 0.021 3.979 29 O -0.190 6.190 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.222 0.778 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.097 0.903 43 H 0.138 0.862 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.097 1.619 15.796 17.009 hybrid contribution 0.580 -0.708 -0.691 1.147 sum -5.518 0.911 15.105 16.107 Atomic orbital electron populations 1.22045 0.95251 1.01962 1.01950 1.21368 0.93124 0.98554 0.84688 0.88265 1.20991 0.87240 0.96637 0.93637 1.42302 0.99605 1.70126 1.25182 1.19138 0.89435 1.29779 0.99204 0.91465 1.24743 0.96431 1.01601 0.97927 1.69693 1.07153 1.50407 1.29942 0.86326 0.79103 0.79208 0.81849 1.21334 1.21730 1.21412 1.47639 1.50846 1.12133 1.22545 1.21708 0.99607 0.82129 1.02800 1.20132 0.77879 0.87005 0.84208 1.90725 1.56231 1.17032 1.76342 1.21685 1.00137 0.99595 0.95884 1.22787 0.85989 0.98874 0.91107 0.89231 1.23676 0.96314 0.91666 0.93373 1.86258 1.43929 1.55445 1.36694 1.18930 0.92068 0.99903 0.89776 1.20339 0.92645 1.00681 0.99958 1.20840 0.98557 1.00780 0.94293 1.20931 0.98373 1.00046 0.93977 1.20644 0.93622 0.97123 1.01368 1.19043 0.91772 0.97974 0.89089 1.86583 1.23183 1.73942 1.35316 0.91497 0.92454 0.92753 0.96306 0.95572 0.77798 0.93541 0.93347 0.90334 0.91371 0.87141 0.87062 0.90333 0.86174 0.85272 0.85448 0.85237 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.19 37.15 0.34 -1.61 16 2 C 0.13 2.16 2.80 -67.93 -0.19 1.97 16 3 H 0.10 1.98 6.90 -51.93 -0.36 1.62 16 4 C 0.14 2.92 5.50 -4.04 -0.02 2.90 16 5 N -0.73 -19.00 5.43 -59.91 -0.33 -19.32 16 6 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 7 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 8 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 9 N -0.92 -28.74 13.06 55.49 0.72 -28.02 16 10 Si 0.90 22.79 29.55 -169.99 -5.02 17.76 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 14 N -0.60 -9.65 2.24 -173.93 -0.39 -10.04 16 15 C 0.08 1.01 9.30 59.85 0.56 1.57 16 16 C 0.52 9.13 7.27 -10.99 -0.08 9.05 16 17 O -0.53 -11.46 14.80 -7.25 -0.11 -11.57 16 18 C -0.13 -1.74 3.98 -27.89 -0.11 -1.85 16 19 C 0.07 1.01 2.55 -26.48 -0.07 0.94 16 20 H 0.09 1.35 7.94 -51.93 -0.41 0.93 16 21 C 0.03 0.29 6.56 37.41 0.25 0.54 16 22 O -0.31 -4.30 10.42 -32.86 -0.34 -4.64 16 23 C 0.04 0.58 6.49 -39.14 -0.25 0.32 16 24 C -0.12 -1.52 9.96 -39.43 -0.39 -1.91 16 25 C -0.13 -1.50 10.04 -39.59 -0.40 -1.89 16 26 C -0.12 -1.52 10.04 -39.59 -0.40 -1.92 16 27 C -0.11 -1.80 9.96 -39.43 -0.39 -2.19 16 28 C 0.07 1.16 6.49 -39.14 -0.25 0.91 16 29 O -0.28 -5.23 9.40 -43.74 -0.41 -5.64 16 30 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 31 H 0.06 0.65 7.67 -51.92 -0.40 0.25 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.02 0.37 6.88 -51.93 -0.36 0.02 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.39 11.04 7.07 -40.82 -0.29 10.75 16 36 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.08 1.07 6.53 -51.93 -0.34 0.73 16 39 H 0.07 0.79 6.44 -51.93 -0.33 0.45 16 40 H 0.11 1.47 7.40 -51.93 -0.38 1.08 16 41 H 0.11 0.93 8.11 -51.93 -0.42 0.51 16 42 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 46 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 47 H 0.14 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -36.52 384.03 -8.82 -45.34 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -7.07 Total: 11.05 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.66 Total: -0.70 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.01 Total: -57.38 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.86 Total: -21.86 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.52 -8.82 -45.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666908952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.866 kcal (2) G-P(sol) polarization free energy of solvation -36.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds