Wall clock time and date at job start Tue Mar 31 2020 17:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47387 * 2 1 4 4 C 1.52999 * 109.47544 * 240.00130 * 2 1 3 5 5 N 1.46501 * 109.47167 * 185.00477 * 4 2 1 6 6 C 1.36940 * 119.99877 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00054 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99800 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00184 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47064 * 60.00142 * 10 8 6 12 12 H 1.48505 * 109.47257 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46890 * 300.00160 * 10 8 6 14 14 N 1.46499 * 109.47174 * 119.99660 * 2 1 3 15 15 C 1.46504 * 119.99686 * 60.00456 * 14 2 1 16 16 C 1.34776 * 120.00785 * 240.00454 * 14 2 1 17 17 O 1.21288 * 119.99551 * 0.02562 * 16 14 2 18 18 C 1.50694 * 120.00329 * 179.97438 * 16 14 2 19 19 C 1.53002 * 109.46877 * 179.97438 * 18 16 14 20 20 H 1.08997 * 109.70651 * 54.41638 * 19 18 16 21 21 C 1.53478 * 109.70940 * 174.99707 * 19 18 16 22 22 O 1.43171 * 108.23336 * 179.48273 * 21 19 18 23 23 C 1.36108 * 116.69421 * 313.74639 * 22 21 19 24 24 C 1.38705 * 119.39414 * 197.21142 * 23 22 21 25 25 C 1.38189 * 120.06790 * 180.13206 * 24 23 22 26 26 C 1.38254 * 120.11196 * 0.04332 * 25 24 23 27 27 C 1.38193 * 120.11561 * 359.72269 * 26 25 24 28 28 C 1.38701 * 120.06483 * 0.37842 * 27 26 25 29 29 O 1.36111 * 119.39556 * 180.02562 * 28 27 26 30 30 H 1.09008 * 109.46988 * 60.00252 * 1 2 3 31 31 H 1.09008 * 109.46988 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47780 * 300.00199 * 1 2 3 33 33 H 1.09005 * 109.47041 * 304.99920 * 4 2 1 34 34 H 1.08990 * 109.47380 * 64.99720 * 4 2 1 35 35 H 0.97005 * 119.99913 * 359.97438 * 5 4 2 36 36 H 0.97002 * 120.00171 * 180.02562 * 9 8 6 37 37 H 1.09008 * 109.47048 * 269.99807 * 15 14 2 38 38 H 1.09003 * 109.47353 * 29.99885 * 15 14 2 39 39 H 1.09003 * 109.47338 * 150.00483 * 15 14 2 40 40 H 1.08996 * 109.47388 * 60.00248 * 18 16 14 41 41 H 1.09002 * 109.47013 * 299.99720 * 18 16 14 42 42 H 1.09009 * 109.70617 * 59.79809 * 21 19 18 43 43 H 1.09004 * 109.74866 * 299.19437 * 21 19 18 44 44 H 1.07998 * 119.96192 * 0.11359 * 24 23 22 45 45 H 1.08005 * 119.94579 * 180.02562 * 25 24 23 46 46 H 1.08010 * 119.94315 * 179.97438 * 26 25 24 47 47 H 1.07995 * 119.96610 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.1840 -1.4379 -2.2071 7 1 3.6470 -1.8430 -3.0520 8 6 5.5674 -1.5371 -2.1516 9 7 6.2218 -1.0438 -1.1216 10 14 6.5003 -2.3719 -3.5380 11 1 6.2430 -1.6524 -4.8113 12 1 7.9550 -2.3480 -3.2406 13 1 6.0444 -3.7795 -3.6641 14 7 2.0183 -0.6905 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7931 -0.0356 2.0835 17 8 3.0857 1.1257 1.8918 18 6 3.2949 -0.7458 3.3142 19 6 4.1454 0.2157 4.1466 20 1 3.5749 1.1192 4.3614 21 6 4.5558 -0.4619 5.4612 22 8 5.3584 0.4588 6.2082 23 6 6.3422 1.1058 5.5255 24 6 7.3675 1.7209 6.2287 25 6 8.3719 2.3840 5.5498 26 6 8.3574 2.4371 4.1683 27 6 7.3415 1.8223 3.4614 28 6 6.3292 1.1568 4.1368 29 8 5.3356 0.5556 3.4269 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6054 -1.7198 -1.2952 34 1 1.7517 -0.1584 -2.1369 35 1 3.9824 -0.4622 -0.4317 36 1 7.1886 -1.1128 -1.0830 37 1 0.7375 -2.1444 1.9994 38 1 1.5295 -2.5969 0.4708 39 1 2.4628 -2.5818 1.9865 40 1 3.9003 -1.6024 3.0179 41 1 2.4468 -1.0880 3.9074 42 1 5.1321 -1.3619 5.2466 43 1 3.6661 -0.7231 6.0343 44 1 7.3805 1.6818 7.3079 45 1 9.1695 2.8620 6.0992 46 1 9.1437 2.9565 3.6405 47 1 7.3328 1.8649 2.3824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666908952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:15 Heat of formation + Delta-G solvation = -85.706685 kcal Electronic energy + Delta-G solvation = -29815.208488 eV Core-core repulsion = 25770.464144 eV Total energy + Delta-G solvation = -4044.744344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31712 -40.98561 -38.74947 -38.27110 -37.72744 -35.82510 -34.29453 -33.25627 -31.81950 -31.61288 -30.12661 -28.20683 -27.69781 -27.37963 -25.10537 -24.44571 -23.72615 -22.41487 -21.51272 -20.21606 -19.66468 -19.10694 -18.61177 -18.11168 -17.84258 -17.08377 -16.71235 -16.54672 -16.20311 -15.98531 -15.62962 -15.42212 -15.34923 -15.19367 -14.85969 -14.80483 -14.63467 -14.12745 -13.82916 -13.80314 -13.68027 -13.27267 -13.24481 -13.03290 -12.89050 -12.80405 -12.76101 -12.67995 -12.50671 -12.19427 -12.13230 -11.92400 -11.81473 -11.74572 -11.40670 -10.97937 -10.74013 -9.63571 -9.53156 -9.05100 -9.00936 -7.92927 -5.24335 0.29960 0.34560 1.42795 1.46872 1.53154 1.68482 2.03074 2.10396 2.28076 2.53994 2.75302 3.15454 3.38431 3.50535 3.56722 3.73282 3.81498 3.98649 4.10744 4.12918 4.23790 4.25302 4.29277 4.34989 4.37943 4.41912 4.47172 4.48560 4.61076 4.67928 4.77502 4.79466 4.84240 4.91215 4.93899 5.04556 5.15046 5.21213 5.23318 5.30564 5.45649 5.50954 5.69166 5.72863 5.97952 6.24510 6.45916 6.50914 7.27065 7.31611 8.08596 8.31770 9.28714 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009715 B = 0.004071 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.525885 B = 6876.131291 C = 8963.942864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.129 3.871 3 H 0.060 0.940 4 C 0.141 3.859 5 N -0.742 5.742 6 C -0.248 4.248 7 H 0.078 0.922 8 C -0.075 4.075 9 N -0.965 5.965 10 Si 0.974 3.026 11 H -0.279 1.279 12 H -0.299 1.299 13 H -0.272 1.272 14 N -0.599 5.599 15 C 0.075 3.925 16 C 0.505 3.495 17 O -0.585 6.585 18 C -0.122 4.122 19 C 0.062 3.938 20 H 0.074 0.926 21 C 0.031 3.969 22 O -0.312 6.312 23 C 0.028 3.972 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.113 4.113 27 C -0.144 4.144 28 C 0.033 3.967 29 O -0.322 6.322 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.025 0.975 35 H 0.371 0.629 36 H 0.247 0.753 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.168 0.832 42 H 0.082 0.918 43 H 0.168 0.832 44 H 0.160 0.840 45 H 0.171 0.829 46 H 0.153 0.847 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 -0.482 17.953 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.025 3.975 3 H 0.078 0.922 4 C 0.014 3.986 5 N -0.385 5.385 6 C -0.380 4.380 7 H 0.096 0.904 8 C -0.267 4.267 9 N -0.615 5.615 10 Si 0.803 3.197 11 H -0.206 1.206 12 H -0.225 1.225 13 H -0.198 1.198 14 N -0.331 5.331 15 C -0.067 4.067 16 C 0.295 3.705 17 O -0.465 6.465 18 C -0.161 4.161 19 C 0.005 3.995 20 H 0.092 0.908 21 C -0.044 4.044 22 O -0.227 6.227 23 C -0.017 4.017 24 C -0.134 4.134 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.163 4.163 28 C -0.012 4.012 29 O -0.237 6.237 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.203 0.797 36 H 0.056 0.944 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.185 0.815 42 H 0.100 0.900 43 H 0.185 0.815 44 H 0.177 0.823 45 H 0.188 0.812 46 H 0.171 0.829 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.345 -0.035 17.672 19.138 hybrid contribution 0.884 -0.172 -1.313 1.592 sum -6.462 -0.207 16.359 17.590 Atomic orbital electron populations 1.21936 0.91109 1.03717 1.02977 1.21213 0.96097 0.96110 0.84036 0.92185 1.21211 0.84188 0.97869 0.95341 1.42530 1.01986 1.69828 1.24141 1.19602 0.89979 1.28735 0.99686 0.90444 1.25616 0.97528 1.03039 1.00526 1.69906 1.06772 1.52541 1.32300 0.85209 0.77003 0.78722 0.78782 1.20554 1.22506 1.19805 1.47802 1.50216 1.13528 1.21594 1.21987 1.02037 0.79627 1.03061 1.20995 0.77248 0.86697 0.85580 1.90696 1.58214 1.19729 1.77830 1.21774 1.01544 0.98299 0.94451 1.23012 0.84813 0.98938 0.92705 0.90808 1.23919 0.97682 0.90659 0.92165 1.86235 1.43830 1.55791 1.36813 1.19168 0.93116 1.00517 0.88931 1.20824 0.91736 0.99350 1.01451 1.21322 0.98927 0.99309 0.93530 1.21242 0.97657 0.99120 0.95076 1.20706 0.95746 0.99638 1.00240 1.19354 0.92060 0.99345 0.90434 1.86518 1.24734 1.74659 1.37771 0.90580 0.90196 0.91698 0.94321 0.95723 0.79715 0.94385 0.88872 0.91444 0.90500 0.87377 0.81458 0.89951 0.81456 0.82276 0.81181 0.82923 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.19 71.98 0.66 -2.60 16 2 C 0.13 4.49 2.80 44.99 0.13 4.62 16 3 H 0.06 2.56 6.90 -2.39 -0.02 2.54 16 4 C 0.14 5.77 5.50 86.38 0.48 6.25 16 5 N -0.74 -40.01 5.43 -343.46 -1.87 -41.87 16 6 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 7 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 8 C -0.07 -4.47 5.50 84.86 0.47 -4.01 16 9 N -0.97 -62.81 13.06 21.65 0.28 -62.52 16 10 Si 0.97 47.75 29.55 68.60 2.03 49.77 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 14 N -0.60 -19.23 2.24 -822.58 -1.85 -21.07 16 15 C 0.07 1.69 9.30 127.77 1.19 2.88 16 16 C 0.51 18.36 7.27 87.66 0.64 19.00 16 17 O -0.58 -27.51 14.80 9.18 0.14 -27.37 16 18 C -0.12 -3.12 3.98 29.85 0.12 -3.00 16 19 C 0.06 1.85 2.55 30.76 0.08 1.93 16 20 H 0.07 2.36 7.94 -2.39 -0.02 2.34 16 21 C 0.03 0.66 6.56 72.14 0.47 1.13 16 22 O -0.31 -8.38 10.42 -82.56 -0.86 -9.24 16 23 C 0.03 0.84 6.49 22.56 0.15 0.99 16 24 C -0.12 -2.77 9.96 22.37 0.22 -2.55 16 25 C -0.11 -2.44 10.04 22.26 0.22 -2.22 16 26 C -0.11 -3.02 10.04 22.26 0.22 -2.80 16 27 C -0.14 -5.25 9.96 22.37 0.22 -5.03 16 28 C 0.03 1.24 6.49 22.56 0.15 1.39 16 29 O -0.32 -13.30 9.40 -72.20 -0.68 -13.98 16 30 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.08 1.53 7.67 -2.38 -0.02 1.51 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.04 1.46 6.88 -2.38 -0.02 1.44 16 34 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.37 22.33 7.07 -92.70 -0.65 21.67 16 36 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 37 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.07 1.70 6.53 -2.39 -0.02 1.68 16 39 H 0.08 1.62 6.44 -2.39 -0.02 1.60 16 40 H 0.11 2.86 7.40 -2.39 -0.02 2.84 16 41 H 0.17 2.23 8.11 -2.39 -0.02 2.21 16 42 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.17 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 45 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 47 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -87.63 384.03 3.77 -83.86 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: 0.32 Total: 39.99 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 6.25 Total: 2.43 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -3.43 Total: -125.47 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -1.40 Total: -50.59 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.77 kcal Total: -87.63 3.77 -83.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666908952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.843 kcal (2) G-P(sol) polarization free energy of solvation -87.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds