Wall clock time and date at job start Tue Mar 31 2020 17:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46672 * 2 1 4 4 C 1.52994 * 109.47544 * 120.00307 * 2 1 3 5 5 N 1.46498 * 109.47567 * 174.99946 * 4 2 1 6 6 C 1.36936 * 119.99997 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00032 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99771 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00192 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99795 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47378 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47150 * 120.00355 * 10 8 6 13 13 H 1.48505 * 109.47001 * 240.00278 * 10 8 6 14 14 N 1.46499 * 109.47269 * 240.00720 * 2 1 3 15 15 C 1.46504 * 119.99686 * 299.99817 * 14 2 1 16 16 C 1.34776 * 120.00785 * 119.99815 * 14 2 1 17 17 O 1.21288 * 119.99551 * 0.02562 * 16 14 2 18 18 C 1.50694 * 120.00329 * 179.97438 * 16 14 2 19 19 C 1.53002 * 109.46877 * 179.97438 * 18 16 14 20 20 H 1.08997 * 109.70651 * 54.41638 * 19 18 16 21 21 C 1.53478 * 109.70940 * 174.99707 * 19 18 16 22 22 O 1.43171 * 108.23336 * 179.48273 * 21 19 18 23 23 C 1.36108 * 116.69421 * 313.74639 * 22 21 19 24 24 C 1.38705 * 119.39414 * 197.21142 * 23 22 21 25 25 C 1.38189 * 120.06790 * 180.13206 * 24 23 22 26 26 C 1.38254 * 120.11196 * 0.04332 * 25 24 23 27 27 C 1.38193 * 120.11561 * 359.72269 * 26 25 24 28 28 C 1.38701 * 120.06483 * 0.37842 * 27 26 25 29 29 O 1.36111 * 119.39556 * 180.02562 * 28 27 26 30 30 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47446 * 299.99474 * 1 2 3 32 32 H 1.09007 * 109.47199 * 60.00096 * 1 2 3 33 33 H 1.08999 * 109.47220 * 295.00548 * 4 2 1 34 34 H 1.09001 * 109.47079 * 54.99695 * 4 2 1 35 35 H 0.97000 * 119.99820 * 359.97438 * 5 4 2 36 36 H 0.96999 * 120.00232 * 179.97438 * 9 8 6 37 37 H 1.09008 * 109.47048 * 269.99807 * 15 14 2 38 38 H 1.09003 * 109.47353 * 29.99885 * 15 14 2 39 39 H 1.09003 * 109.47338 * 150.00483 * 15 14 2 40 40 H 1.08996 * 109.47388 * 60.00248 * 18 16 14 41 41 H 1.09002 * 109.47013 * 299.99720 * 18 16 14 42 42 H 1.09009 * 109.70617 * 59.79809 * 21 19 18 43 43 H 1.09004 * 109.74866 * 299.19437 * 21 19 18 44 44 H 1.07998 * 119.96192 * 0.11359 * 24 23 22 45 45 H 1.08005 * 119.94579 * 180.02562 * 25 24 23 46 46 H 1.08010 * 119.94315 * 179.97438 * 26 25 24 47 47 H 1.07995 * 119.96610 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1839 -1.4380 2.2071 7 1 3.6469 -1.8432 3.0519 8 6 5.5673 -1.5381 2.1512 9 7 6.2218 -1.0447 1.1213 10 14 6.5001 -2.3730 3.5376 11 1 5.5398 -2.8395 4.5698 12 1 7.2510 -3.5355 2.9993 13 1 7.4511 -1.4080 4.1458 14 7 2.0184 -0.6904 -1.1962 15 6 1.6644 -2.0930 -1.4282 16 6 2.7932 -0.0355 -2.0834 17 8 3.0866 1.1256 -1.8912 18 6 3.2960 -0.7460 -3.3136 19 6 4.1453 0.2160 -4.1467 20 1 4.9368 0.6381 -3.5275 21 6 4.7624 -0.5345 -5.3347 22 8 5.5387 0.3955 -6.0978 23 6 4.9583 1.5955 -6.3728 24 6 5.4805 2.3885 -7.3839 25 6 4.9039 3.6106 -7.6731 26 6 3.8058 4.0467 -6.9551 27 6 3.2776 3.2594 -5.9497 28 6 3.8528 2.0327 -5.6530 29 8 3.3211 1.2681 -4.6604 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7517 -0.1585 2.1369 34 1 1.6054 -1.7198 1.2950 35 1 3.9824 -0.4628 0.4314 36 1 7.1885 -1.1143 1.0824 37 1 2.4158 -2.7376 -0.9719 38 1 0.6904 -2.3002 -0.9848 39 1 1.6239 -2.2851 -2.5004 40 1 2.4485 -1.0889 -3.9070 41 1 3.9018 -1.6021 -3.0166 42 1 3.9708 -0.9509 -5.9578 43 1 5.4039 -1.3370 -4.9704 44 1 6.3389 2.0506 -7.9456 45 1 5.3119 4.2263 -8.4611 46 1 3.3575 5.0025 -7.1832 47 1 2.4195 3.6022 -5.3907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666908956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:22 Heat of formation + Delta-G solvation = -63.017485 kcal Electronic energy + Delta-G solvation = -29486.380474 eV Core-core repulsion = 25442.620008 eV Total energy + Delta-G solvation = -4043.760466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.32502 -39.68300 -37.78944 -37.24635 -36.27371 -34.02561 -33.06600 -31.73355 -30.70856 -30.10661 -29.13701 -27.20711 -26.63436 -25.58901 -24.05083 -22.81992 -22.56902 -21.15525 -20.44313 -18.99567 -18.51674 -17.61693 -17.07105 -16.88099 -16.85239 -15.79727 -15.35141 -15.22437 -15.04831 -14.75676 -14.51254 -14.37916 -13.95835 -13.85855 -13.59613 -13.39043 -13.29932 -12.99010 -12.79149 -12.47252 -12.28179 -12.15151 -11.96761 -11.92995 -11.79583 -11.76089 -11.44457 -11.24566 -10.89696 -10.86699 -10.77589 -10.48464 -10.38021 -10.02275 -9.71009 -9.39356 -8.88187 -8.69622 -8.22366 -8.07804 -6.90498 -5.74740 -3.03723 1.23664 1.27210 2.96487 3.01533 3.18507 3.29921 3.42428 3.48104 3.50508 3.68102 4.13059 4.53583 4.59126 4.59878 4.76529 4.88470 4.91715 5.08369 5.12452 5.20517 5.27856 5.30674 5.34194 5.39212 5.41564 5.54183 5.56156 5.60908 5.68695 5.71588 5.85016 5.96353 6.07001 6.09995 6.12302 6.15761 6.19389 6.38430 6.38717 6.48573 6.57423 6.74537 6.91510 7.00935 7.43189 7.69848 7.75119 8.43123 8.57871 9.54766 10.13626 10.49208 11.47552 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.003114 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.723275 B = 8989.047156 C =10161.016186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.099 0.901 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.239 4.239 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.930 5.930 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.292 1.292 14 N -0.599 5.599 15 C 0.078 3.922 16 C 0.520 3.480 17 O -0.527 6.527 18 C -0.131 4.131 19 C 0.069 3.931 20 H 0.099 0.901 21 C 0.027 3.973 22 O -0.305 6.305 23 C 0.045 3.955 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.116 4.116 28 C 0.063 3.937 29 O -0.291 6.291 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.027 0.973 34 H 0.020 0.980 35 H 0.386 0.614 36 H 0.254 0.746 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.126 0.874 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.339 1.992 -18.007 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.118 0.882 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.370 4.370 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.219 1.219 14 N -0.332 5.332 15 C -0.065 4.065 16 C 0.308 3.692 17 O -0.403 6.403 18 C -0.170 4.170 19 C 0.012 3.988 20 H 0.117 0.883 21 C -0.049 4.049 22 O -0.220 6.220 23 C 0.000 4.000 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.136 4.136 27 C -0.134 4.134 28 C 0.018 3.982 29 O -0.205 6.205 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.220 0.780 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.138 0.862 42 H 0.094 0.906 43 H 0.144 0.856 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.153 2.457 -17.693 20.072 hybrid contribution 0.760 -0.706 0.768 1.291 sum -8.393 1.751 -16.925 18.973 Atomic orbital electron populations 1.22060 0.95305 1.01936 1.02065 1.21361 0.93146 0.98530 0.84643 0.88248 1.20998 0.87087 0.96708 0.93653 1.42304 0.99719 1.70120 1.25095 1.19258 0.89440 1.29201 0.99123 0.91262 1.24739 0.96427 1.01727 0.98063 1.69689 1.07053 1.50887 1.30193 0.86142 0.79947 0.78730 0.81507 1.20634 1.21949 1.21888 1.47627 1.50911 1.12155 1.22513 1.21746 1.01572 0.82367 1.00802 1.20105 0.78253 0.86942 0.83929 1.90730 1.56686 1.16780 1.76123 1.21682 1.01420 0.98730 0.95215 1.22883 0.94179 0.87737 0.93998 0.88298 1.23703 0.97179 0.91465 0.92526 1.86307 1.41983 1.23215 1.70477 1.18979 0.95929 0.87779 0.97336 1.20411 1.01696 0.94859 0.96445 1.20858 0.96854 0.95751 1.00763 1.20894 0.96888 0.99712 0.96085 1.20479 1.01997 0.91258 0.99705 1.19009 0.95585 0.93051 0.90572 1.86388 1.41206 1.43670 1.49220 0.92415 0.91437 0.92646 0.95541 0.96223 0.77998 0.93635 0.91607 0.91220 0.91870 0.88042 0.86157 0.90560 0.85649 0.85038 0.85331 0.85299 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.17 37.16 0.34 -1.65 16 2 C 0.13 2.17 2.80 -67.93 -0.19 1.98 16 3 H 0.10 1.98 6.90 -51.93 -0.36 1.62 16 4 C 0.14 2.90 5.55 -4.05 -0.02 2.88 16 5 N -0.73 -18.68 5.43 -59.91 -0.33 -19.01 16 6 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 10 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 14 N -0.60 -9.64 2.24 -173.93 -0.39 -10.03 16 15 C 0.08 0.98 9.40 59.85 0.56 1.54 16 16 C 0.52 9.13 7.27 -10.99 -0.08 9.05 16 17 O -0.53 -11.49 14.80 -7.25 -0.11 -11.60 16 18 C -0.13 -1.70 3.98 -27.89 -0.11 -1.81 16 19 C 0.07 1.00 2.55 -26.48 -0.07 0.93 16 20 H 0.10 1.71 7.94 -51.93 -0.41 1.30 16 21 C 0.03 0.31 6.56 37.41 0.25 0.55 16 22 O -0.31 -4.25 10.42 -32.86 -0.34 -4.60 16 23 C 0.04 0.63 6.49 -39.14 -0.25 0.38 16 24 C -0.12 -1.36 9.96 -39.43 -0.39 -1.75 16 25 C -0.12 -1.25 10.04 -39.59 -0.40 -1.65 16 26 C -0.12 -1.23 10.04 -39.59 -0.40 -1.63 16 27 C -0.12 -1.50 9.96 -39.43 -0.39 -1.89 16 28 C 0.06 0.95 6.49 -39.14 -0.25 0.69 16 29 O -0.29 -4.65 9.40 -43.74 -0.41 -5.06 16 30 H 0.06 0.66 6.66 -51.93 -0.35 0.31 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.02 0.38 7.84 -51.93 -0.41 -0.02 16 35 H 0.39 10.72 7.06 -40.82 -0.29 10.43 16 36 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 37 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 38 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 39 H 0.06 0.59 6.44 -51.93 -0.33 0.25 16 40 H 0.10 1.02 7.40 -51.93 -0.38 0.64 16 41 H 0.12 1.39 8.11 -51.93 -0.42 0.97 16 42 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 46 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 47 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -35.77 384.00 -8.81 -44.57 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -7.06 Total: 9.87 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.66 Total: 0.26 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.01 Total: -56.73 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.86 Total: -21.26 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.77 -8.81 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666908956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.445 kcal (2) G-P(sol) polarization free energy of solvation -35.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds