Wall clock time and date at job start Tue Mar 31 2020 17:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46672 * 2 1 4 4 C 1.52994 * 109.47544 * 120.00307 * 2 1 3 5 5 N 1.46498 * 109.47567 * 174.99946 * 4 2 1 6 6 C 1.36936 * 119.99997 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00032 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99771 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00192 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99795 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47378 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47150 * 120.00355 * 10 8 6 13 13 H 1.48505 * 109.47001 * 240.00278 * 10 8 6 14 14 N 1.46499 * 109.47269 * 240.00720 * 2 1 3 15 15 C 1.46504 * 119.99686 * 299.99817 * 14 2 1 16 16 C 1.34776 * 120.00785 * 119.99815 * 14 2 1 17 17 O 1.21288 * 119.99551 * 0.02562 * 16 14 2 18 18 C 1.50694 * 120.00329 * 179.97438 * 16 14 2 19 19 C 1.53002 * 109.46877 * 179.97438 * 18 16 14 20 20 H 1.08997 * 109.70651 * 54.41638 * 19 18 16 21 21 C 1.53478 * 109.70940 * 174.99707 * 19 18 16 22 22 O 1.43171 * 108.23336 * 179.48273 * 21 19 18 23 23 C 1.36108 * 116.69421 * 313.74639 * 22 21 19 24 24 C 1.38705 * 119.39414 * 197.21142 * 23 22 21 25 25 C 1.38189 * 120.06790 * 180.13206 * 24 23 22 26 26 C 1.38254 * 120.11196 * 0.04332 * 25 24 23 27 27 C 1.38193 * 120.11561 * 359.72269 * 26 25 24 28 28 C 1.38701 * 120.06483 * 0.37842 * 27 26 25 29 29 O 1.36111 * 119.39556 * 180.02562 * 28 27 26 30 30 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47446 * 299.99474 * 1 2 3 32 32 H 1.09007 * 109.47199 * 60.00096 * 1 2 3 33 33 H 1.08999 * 109.47220 * 295.00548 * 4 2 1 34 34 H 1.09001 * 109.47079 * 54.99695 * 4 2 1 35 35 H 0.97000 * 119.99820 * 359.97438 * 5 4 2 36 36 H 0.96999 * 120.00232 * 179.97438 * 9 8 6 37 37 H 1.09008 * 109.47048 * 269.99807 * 15 14 2 38 38 H 1.09003 * 109.47353 * 29.99885 * 15 14 2 39 39 H 1.09003 * 109.47338 * 150.00483 * 15 14 2 40 40 H 1.08996 * 109.47388 * 60.00248 * 18 16 14 41 41 H 1.09002 * 109.47013 * 299.99720 * 18 16 14 42 42 H 1.09009 * 109.70617 * 59.79809 * 21 19 18 43 43 H 1.09004 * 109.74866 * 299.19437 * 21 19 18 44 44 H 1.07998 * 119.96192 * 0.11359 * 24 23 22 45 45 H 1.08005 * 119.94579 * 180.02562 * 25 24 23 46 46 H 1.08010 * 119.94315 * 179.97438 * 26 25 24 47 47 H 1.07995 * 119.96610 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1839 -1.4380 2.2071 7 1 3.6469 -1.8432 3.0519 8 6 5.5673 -1.5381 2.1512 9 7 6.2218 -1.0447 1.1213 10 14 6.5001 -2.3730 3.5376 11 1 5.5398 -2.8395 4.5698 12 1 7.2510 -3.5355 2.9993 13 1 7.4511 -1.4080 4.1458 14 7 2.0184 -0.6904 -1.1962 15 6 1.6644 -2.0930 -1.4282 16 6 2.7932 -0.0355 -2.0834 17 8 3.0866 1.1256 -1.8912 18 6 3.2960 -0.7460 -3.3136 19 6 4.1453 0.2160 -4.1467 20 1 4.9368 0.6381 -3.5275 21 6 4.7624 -0.5345 -5.3347 22 8 5.5387 0.3955 -6.0978 23 6 4.9583 1.5955 -6.3728 24 6 5.4805 2.3885 -7.3839 25 6 4.9039 3.6106 -7.6731 26 6 3.8058 4.0467 -6.9551 27 6 3.2776 3.2594 -5.9497 28 6 3.8528 2.0327 -5.6530 29 8 3.3211 1.2681 -4.6604 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7517 -0.1585 2.1369 34 1 1.6054 -1.7198 1.2950 35 1 3.9824 -0.4628 0.4314 36 1 7.1885 -1.1143 1.0824 37 1 2.4158 -2.7376 -0.9719 38 1 0.6904 -2.3002 -0.9848 39 1 1.6239 -2.2851 -2.5004 40 1 2.4485 -1.0889 -3.9070 41 1 3.9018 -1.6021 -3.0166 42 1 3.9708 -0.9509 -5.9578 43 1 5.4039 -1.3370 -4.9704 44 1 6.3389 2.0506 -7.9456 45 1 5.3119 4.2263 -8.4611 46 1 3.3575 5.0025 -7.1832 47 1 2.4195 3.6022 -5.3907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666908956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:21 Heat of formation + Delta-G solvation = -86.316145 kcal Electronic energy + Delta-G solvation = -29487.390780 eV Core-core repulsion = 25442.620008 eV Total energy + Delta-G solvation = -4044.770772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.33556 -40.99273 -38.75294 -38.29876 -37.72830 -35.84291 -34.30580 -33.26385 -31.82294 -31.61556 -30.11946 -28.22839 -27.75559 -27.34576 -25.13066 -24.45117 -23.72140 -22.42772 -21.52504 -20.21678 -19.69524 -19.10387 -18.62399 -18.11743 -17.86542 -17.10837 -16.63218 -16.59642 -16.22065 -15.97714 -15.69900 -15.49991 -15.28560 -15.20169 -14.85325 -14.80208 -14.61791 -14.23316 -13.94732 -13.74462 -13.72413 -13.31664 -13.11204 -13.06029 -12.90735 -12.82298 -12.79126 -12.68669 -12.49701 -12.13805 -12.10674 -11.95675 -11.81246 -11.72390 -11.43258 -11.01722 -10.74745 -9.63430 -9.54462 -9.06039 -9.01331 -7.95099 -5.24922 0.30832 0.33870 1.44536 1.46274 1.56070 1.69139 1.98361 2.07756 2.24488 2.54100 2.75566 3.12470 3.37959 3.50514 3.55478 3.72948 3.78662 3.96881 4.09873 4.13195 4.19937 4.23941 4.31168 4.34503 4.38538 4.42741 4.46175 4.49433 4.61881 4.64616 4.74484 4.78622 4.85745 4.90837 4.91518 5.05336 5.15574 5.21394 5.22935 5.30971 5.46899 5.50970 5.68918 5.73975 5.93698 6.24814 6.41968 6.48932 7.26128 7.31612 8.07637 8.31264 9.28064 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.003114 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.723275 B = 8989.047156 C =10161.016186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.129 3.871 3 H 0.061 0.939 4 C 0.143 3.857 5 N -0.742 5.742 6 C -0.242 4.242 7 H 0.078 0.922 8 C -0.076 4.076 9 N -0.969 5.969 10 Si 0.974 3.026 11 H -0.264 1.264 12 H -0.291 1.291 13 H -0.299 1.299 14 N -0.599 5.599 15 C 0.074 3.926 16 C 0.506 3.494 17 O -0.584 6.584 18 C -0.120 4.120 19 C 0.068 3.932 20 H 0.052 0.948 21 C 0.031 3.969 22 O -0.321 6.321 23 C 0.023 3.977 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.112 4.112 27 C -0.134 4.134 28 C 0.028 3.972 29 O -0.311 6.311 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.039 0.961 35 H 0.371 0.629 36 H 0.249 0.751 37 H 0.045 0.955 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.101 0.899 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.167 0.833 46 H 0.161 0.839 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 0.784 -19.288 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 H 0.079 0.921 4 C 0.016 3.984 5 N -0.384 5.384 6 C -0.374 4.374 7 H 0.096 0.904 8 C -0.269 4.269 9 N -0.620 5.620 10 Si 0.804 3.196 11 H -0.188 1.188 12 H -0.218 1.218 13 H -0.226 1.226 14 N -0.331 5.331 15 C -0.068 4.068 16 C 0.295 3.705 17 O -0.464 6.464 18 C -0.159 4.159 19 C 0.011 3.989 20 H 0.070 0.930 21 C -0.044 4.044 22 O -0.236 6.236 23 C -0.022 4.022 24 C -0.141 4.141 25 C -0.132 4.132 26 C -0.130 4.130 27 C -0.152 4.152 28 C -0.017 4.017 29 O -0.226 6.226 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.203 0.797 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.119 0.881 43 H 0.165 0.835 44 H 0.167 0.833 45 H 0.184 0.816 46 H 0.179 0.821 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.607 1.206 -18.956 21.755 hybrid contribution 1.137 -0.238 1.165 1.645 sum -9.470 0.968 -17.791 20.178 Atomic orbital electron populations 1.21960 0.91373 1.03722 1.02937 1.21215 0.95977 0.96177 0.84091 0.92108 1.21194 0.84178 0.97858 0.95196 1.42522 1.01989 1.69803 1.24106 1.19677 0.89946 1.28182 0.99550 0.90430 1.25586 0.97504 1.03162 1.00602 1.69871 1.06837 1.52880 1.32377 0.85058 0.78443 0.77308 0.78829 1.18834 1.21755 1.22622 1.47788 1.50207 1.13544 1.21558 1.21997 1.01858 0.79483 1.03481 1.20959 0.77675 0.86627 0.85220 1.90698 1.58678 1.19434 1.77606 1.21716 1.02686 0.98110 0.93349 1.22805 0.93382 0.87952 0.94802 0.93023 1.23870 0.98085 0.90991 0.91410 1.86257 1.42899 1.23611 1.70794 1.19305 0.96222 0.88369 0.98319 1.20807 1.02149 0.95236 0.95926 1.21331 0.95925 0.95159 1.00780 1.21307 0.96642 1.00339 0.94704 1.20744 1.02409 0.91272 1.00824 1.19395 0.96949 0.94083 0.91228 1.86343 1.41812 1.44521 1.49941 0.90047 0.90384 0.92038 0.95641 0.94314 0.79727 0.94245 0.93663 0.88960 0.88108 0.84193 0.84514 0.88083 0.83517 0.83306 0.81592 0.82104 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.17 71.98 0.66 -2.72 16 2 C 0.13 4.46 2.80 44.99 0.13 4.59 16 3 H 0.06 2.57 6.90 -2.39 -0.02 2.56 16 4 C 0.14 5.73 5.55 86.38 0.48 6.21 16 5 N -0.74 -38.88 5.43 -343.46 -1.87 -40.75 16 6 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 7 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 8 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 9 N -0.97 -61.04 13.06 21.65 0.28 -60.76 16 10 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 11 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 13 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 14 N -0.60 -19.18 2.24 -822.58 -1.85 -21.03 16 15 C 0.07 1.67 9.40 127.77 1.20 2.87 16 16 C 0.51 18.40 7.27 87.66 0.64 19.04 16 17 O -0.58 -27.48 14.80 9.18 0.14 -27.34 16 18 C -0.12 -3.09 3.98 29.85 0.12 -2.97 16 19 C 0.07 2.06 2.55 30.76 0.08 2.14 16 20 H 0.05 2.01 7.94 -2.39 -0.02 1.99 16 21 C 0.03 0.72 6.56 72.14 0.47 1.19 16 22 O -0.32 -9.08 10.42 -82.56 -0.86 -9.94 16 23 C 0.02 0.65 6.49 22.56 0.15 0.80 16 24 C -0.12 -2.76 9.96 22.37 0.22 -2.54 16 25 C -0.11 -2.04 10.04 22.26 0.22 -1.82 16 26 C -0.11 -2.18 10.04 22.26 0.22 -1.96 16 27 C -0.13 -3.55 9.96 22.37 0.22 -3.33 16 28 C 0.03 0.89 6.49 22.56 0.15 1.03 16 29 O -0.31 -10.55 9.40 -72.20 -0.68 -11.23 16 30 H 0.08 1.57 6.66 -2.39 -0.02 1.55 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.04 1.43 7.84 -2.39 -0.02 1.41 16 35 H 0.37 21.52 7.06 -92.71 -0.65 20.87 16 36 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.04 1.23 8.14 -2.38 -0.02 1.22 16 38 H 0.09 1.67 6.43 -2.39 -0.02 1.66 16 39 H 0.10 1.51 6.44 -2.39 -0.02 1.50 16 40 H 0.14 2.48 7.40 -2.39 -0.02 2.47 16 41 H 0.14 3.06 8.11 -2.39 -0.02 3.04 16 42 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.15 2.59 8.14 -2.38 -0.02 2.57 16 44 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 45 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 46 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 47 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -83.35 384.00 3.79 -79.57 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: 0.32 Total: 36.98 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.27 Total: 5.70 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -3.43 Total: -122.53 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -1.40 Total: -48.51 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -83.35 3.79 -79.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666908956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.751 kcal (2) G-P(sol) polarization free energy of solvation -83.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds