Wall clock time and date at job start Tue Mar 31 2020 17:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46853 * 2 1 4 4 C 1.53003 * 109.47228 * 240.00530 * 2 1 3 5 5 N 1.46497 * 109.47186 * 64.99287 * 4 2 1 6 6 C 1.36938 * 120.00172 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99829 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00123 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99866 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99896 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46864 * 89.99795 * 10 8 6 12 12 H 1.48496 * 109.46960 * 209.99567 * 10 8 6 13 13 H 1.48495 * 109.47062 * 330.00073 * 10 8 6 14 14 C 1.52995 * 109.47577 * 120.00128 * 2 1 3 15 15 N 1.46503 * 109.47289 * 295.00207 * 14 2 1 16 16 C 1.34775 * 119.99975 * 180.02562 * 15 14 2 17 17 O 1.21587 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.47540 * 119.99785 * 179.97438 * 16 15 14 19 19 C 1.39915 * 120.31607 * 0.02562 * 18 16 15 20 20 C 1.37754 * 120.05227 * 179.97438 * 19 18 16 21 21 C 1.38631 * 120.43550 * 359.95623 * 20 19 18 22 22 C 1.38347 * 120.05865 * 0.02562 * 21 20 19 23 23 C 1.38773 * 120.15436 * 0.06781 * 22 21 20 24 24 O 1.36181 * 119.69582 * 179.82544 * 23 22 21 25 25 C 1.42920 * 115.91543 * 68.41846 * 24 23 22 26 26 C 1.52074 * 110.71971 * 275.56618 * 25 24 23 27 27 C 1.52059 * 112.36667 * 64.83633 * 26 25 24 28 28 O 1.36494 * 120.29482 * 180.02562 * 22 21 20 29 29 H 1.09004 * 109.46853 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46668 * 299.99132 * 1 2 3 31 31 H 1.08990 * 109.47512 * 59.99686 * 1 2 3 32 32 H 1.08994 * 109.47120 * 184.99744 * 4 2 1 33 33 H 1.08999 * 109.46980 * 304.99700 * 4 2 1 34 34 H 0.97002 * 120.00304 * 0.02562 * 5 4 2 35 35 H 0.97002 * 119.99792 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47187 * 174.99979 * 14 2 1 37 37 H 1.09001 * 109.47248 * 55.00400 * 14 2 1 38 38 H 0.96999 * 119.99611 * 359.97438 * 15 14 2 39 39 H 1.08001 * 119.97427 * 359.97438 * 19 18 16 40 40 H 1.08008 * 119.78063 * 179.97438 * 20 19 18 41 41 H 1.08007 * 119.96961 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.22490 * 35.91762 * 25 24 23 43 43 H 1.09004 * 109.21582 * 155.30274 * 25 24 23 44 44 H 1.09003 * 108.94220 * 304.06431 * 26 25 24 45 45 H 1.09004 * 108.86816 * 185.55548 * 26 25 24 46 46 H 1.09002 * 109.21622 * 174.79025 * 27 26 25 47 47 H 1.08999 * 109.21721 * 55.41868 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.0010 -0.4206 -3.6856 7 1 2.5614 -1.3383 -3.7866 8 6 1.6341 0.2966 -4.8161 9 7 0.9507 1.4147 -4.6930 10 14 2.1103 -0.3252 -6.5120 11 1 1.0399 -1.2135 -7.0320 12 1 2.2861 0.8282 -7.4307 13 1 3.3832 -1.0845 -6.4214 14 6 2.0401 -0.7212 1.2492 15 7 1.6526 0.0353 2.4424 16 6 1.9967 -0.4132 3.6659 17 8 2.6284 -1.4459 3.7793 18 6 1.6069 0.3490 4.8675 19 6 0.8795 1.5379 4.7445 20 6 0.5179 2.2449 5.8701 21 6 0.8692 1.7865 7.1304 22 6 1.5880 0.6121 7.2651 23 6 1.9610 -0.1098 6.1402 24 8 2.6715 -1.2627 6.2834 25 6 1.9722 -2.3575 6.8792 26 6 2.0247 -2.2679 8.3964 27 6 1.2919 -1.0468 8.9295 28 8 1.9360 0.1560 8.5036 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8898 32 1 3.1263 -0.7993 -1.2057 33 1 1.6055 -1.7197 -1.2953 34 1 1.1487 0.8595 -2.3517 35 1 0.6946 1.9161 -5.4830 36 1 3.1264 -0.7994 1.2054 37 1 1.6056 -1.7198 1.2951 38 1 1.1490 0.8593 2.3518 39 1 0.6013 1.9016 3.7664 40 1 -0.0432 3.1624 5.7701 41 1 0.5821 2.3471 8.0078 42 1 0.9320 -2.3387 6.5538 43 1 2.4312 -3.2931 6.5595 44 1 3.0669 -2.2201 8.7121 45 1 1.5706 -3.1644 8.8184 46 1 1.2817 -1.0819 10.0189 47 1 0.2662 -1.0546 8.5608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714442792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:33 Heat of formation + Delta-G solvation = -73.932547 kcal Electronic energy + Delta-G solvation = -28452.590671 eV Core-core repulsion = 24408.356892 eV Total energy + Delta-G solvation = -4044.233779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.35835 -39.63991 -37.83547 -37.66570 -36.69765 -34.38841 -33.30746 -32.57224 -31.25896 -29.94317 -29.48994 -27.06477 -26.49317 -25.47673 -24.04513 -22.55312 -22.35933 -21.97365 -20.63853 -19.97209 -18.91945 -17.70501 -17.46473 -17.01733 -16.56441 -16.02062 -15.76287 -15.64455 -15.37831 -15.14170 -14.67569 -14.39119 -14.35751 -14.03607 -13.96885 -13.62268 -13.58498 -13.05661 -12.78842 -12.64210 -12.57086 -12.36691 -12.19463 -12.03747 -11.56211 -11.29955 -11.06369 -10.91148 -10.75932 -10.69821 -10.57890 -10.49592 -10.38608 -10.05483 -9.78633 -9.64459 -9.31199 -8.97560 -8.89195 -8.87300 -6.92036 -5.76951 -3.05169 0.38561 0.68337 2.55650 2.99712 3.18924 3.20240 3.44178 3.49497 3.51161 3.58484 4.24247 4.27999 4.42240 4.47529 4.59652 4.68318 4.69533 4.85447 4.87714 4.91079 4.94571 5.03877 5.16505 5.22244 5.31553 5.38488 5.43190 5.58100 5.60437 5.64160 5.79040 5.81122 5.87222 5.96475 6.01104 6.07323 6.11325 6.23720 6.38844 6.48766 6.64935 6.76451 6.77658 6.86955 7.22503 7.47893 7.70940 8.20159 8.42303 9.53574 10.10875 10.45699 11.46072 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028383 B = 0.001985 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.276454 B =14101.983678 C =14831.641231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.128 3.872 15 N -0.721 5.721 16 C 0.554 3.446 17 O -0.517 6.517 18 C -0.134 4.134 19 C -0.080 4.080 20 C -0.119 4.119 21 C -0.094 4.094 22 C 0.053 3.947 23 C 0.124 3.876 24 O -0.295 6.295 25 C 0.066 3.934 26 C -0.190 4.190 27 C 0.059 3.941 28 O -0.317 6.317 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.398 0.602 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 -1.160 30.685 30.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.005 3.995 15 N -0.374 5.374 16 C 0.340 3.660 17 O -0.393 6.393 18 C -0.138 4.138 19 C -0.099 4.099 20 C -0.137 4.137 21 C -0.113 4.113 22 C 0.009 3.991 23 C 0.078 3.922 24 O -0.210 6.210 25 C -0.008 4.008 26 C -0.227 4.227 27 C -0.016 4.016 28 O -0.234 6.234 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.234 0.766 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.074 0.926 43 H 0.125 0.875 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.123 0.877 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.210 -2.011 30.686 30.919 hybrid contribution -0.442 0.280 -0.981 1.112 sum -3.652 -1.730 29.705 29.978 Atomic orbital electron populations 1.21793 0.94681 1.01958 1.01436 1.21560 0.96691 1.00554 0.94194 0.90490 1.20574 0.96665 0.94196 0.85340 1.42337 1.66959 1.27660 1.00582 1.19242 1.28648 1.05369 0.83652 0.91149 1.24739 1.01083 0.97415 0.97871 1.69655 1.43655 1.16564 1.28471 0.86173 0.78030 0.77505 0.84400 1.21746 1.21795 1.20751 1.21429 1.00290 0.95200 0.82618 1.45985 1.57754 1.27910 1.05750 1.17919 0.80113 0.85165 0.82815 1.90825 1.38604 1.23500 1.86358 1.20144 1.02393 0.98198 0.93021 1.21360 0.95730 0.93002 0.99766 1.21031 1.00847 1.00570 0.91228 1.21283 0.95468 0.95768 0.98746 1.19101 0.99637 0.95825 0.84522 1.19174 0.92981 0.88972 0.91048 1.86433 1.35864 1.18122 1.80564 1.22586 0.97263 0.89469 0.91515 1.22534 1.03756 0.99223 0.97235 1.22680 0.95263 0.83244 1.00375 1.86406 1.65569 1.41980 1.29407 0.92799 0.93994 0.91105 0.96067 0.95979 0.78213 0.93548 0.91179 0.91251 0.76633 0.84522 0.84259 0.84332 0.92650 0.87516 0.89663 0.89071 0.87718 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.16 0.33 -1.71 16 2 C -0.11 -1.69 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 5 N -0.73 -18.26 5.33 -59.91 -0.32 -18.58 16 6 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 10 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.13 1.79 5.06 -4.04 -0.02 1.77 16 15 N -0.72 -8.80 5.24 -61.35 -0.32 -9.12 16 16 C 0.55 7.78 7.77 -12.47 -0.10 7.68 16 17 O -0.52 -9.07 15.18 -16.47 -0.25 -9.32 16 18 C -0.13 -1.58 5.88 -104.87 -0.62 -2.20 16 19 C -0.08 -0.67 9.54 -39.13 -0.37 -1.05 16 20 C -0.12 -0.83 10.02 -39.61 -0.40 -1.22 16 21 C -0.09 -0.74 9.99 -39.40 -0.39 -1.14 16 22 C 0.05 0.56 5.73 -39.34 -0.23 0.33 16 23 C 0.12 1.54 5.73 -38.78 -0.22 1.32 16 24 O -0.29 -4.02 8.26 -49.13 -0.41 -4.43 16 25 C 0.07 0.64 6.51 36.69 0.24 0.88 16 26 C -0.19 -1.30 5.92 -27.68 -0.16 -1.47 16 27 C 0.06 0.40 6.51 36.68 0.24 0.64 16 28 O -0.32 -3.24 10.16 -36.81 -0.37 -3.61 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 31 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.38 9.94 6.85 -40.82 -0.28 9.66 16 35 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.40 3.85 5.70 -40.82 -0.23 3.61 16 39 H 0.14 0.84 6.42 -52.49 -0.34 0.51 16 40 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 43 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.35 7.93 -51.93 -0.41 -0.06 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -35.10 382.19 -9.44 -44.54 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -7.04 Total: 6.93 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.19 Total: -2.27 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.08 Total: -55.06 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -1.03 Total: -17.36 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.10 -9.44 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714442792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.393 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds