Wall clock time and date at job start Tue Mar 31 2020 17:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46853 * 2 1 4 4 C 1.53003 * 109.47228 * 240.00530 * 2 1 3 5 5 N 1.46497 * 109.47186 * 64.99287 * 4 2 1 6 6 C 1.36938 * 120.00172 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99829 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00123 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99866 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99896 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46864 * 89.99795 * 10 8 6 12 12 H 1.48496 * 109.46960 * 209.99567 * 10 8 6 13 13 H 1.48495 * 109.47062 * 330.00073 * 10 8 6 14 14 C 1.52995 * 109.47577 * 120.00128 * 2 1 3 15 15 N 1.46503 * 109.47289 * 295.00207 * 14 2 1 16 16 C 1.34775 * 119.99975 * 180.02562 * 15 14 2 17 17 O 1.21587 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.47540 * 119.99785 * 179.97438 * 16 15 14 19 19 C 1.39915 * 120.31607 * 0.02562 * 18 16 15 20 20 C 1.37754 * 120.05227 * 179.97438 * 19 18 16 21 21 C 1.38631 * 120.43550 * 359.95623 * 20 19 18 22 22 C 1.38347 * 120.05865 * 0.02562 * 21 20 19 23 23 C 1.38773 * 120.15436 * 0.06781 * 22 21 20 24 24 O 1.36181 * 119.69582 * 179.82544 * 23 22 21 25 25 C 1.42920 * 115.91543 * 68.41846 * 24 23 22 26 26 C 1.52074 * 110.71971 * 275.56618 * 25 24 23 27 27 C 1.52059 * 112.36667 * 64.83633 * 26 25 24 28 28 O 1.36494 * 120.29482 * 180.02562 * 22 21 20 29 29 H 1.09004 * 109.46853 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46668 * 299.99132 * 1 2 3 31 31 H 1.08990 * 109.47512 * 59.99686 * 1 2 3 32 32 H 1.08994 * 109.47120 * 184.99744 * 4 2 1 33 33 H 1.08999 * 109.46980 * 304.99700 * 4 2 1 34 34 H 0.97002 * 120.00304 * 0.02562 * 5 4 2 35 35 H 0.97002 * 119.99792 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47187 * 174.99979 * 14 2 1 37 37 H 1.09001 * 109.47248 * 55.00400 * 14 2 1 38 38 H 0.96999 * 119.99611 * 359.97438 * 15 14 2 39 39 H 1.08001 * 119.97427 * 359.97438 * 19 18 16 40 40 H 1.08008 * 119.78063 * 179.97438 * 20 19 18 41 41 H 1.08007 * 119.96961 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.22490 * 35.91762 * 25 24 23 43 43 H 1.09004 * 109.21582 * 155.30274 * 25 24 23 44 44 H 1.09003 * 108.94220 * 304.06431 * 26 25 24 45 45 H 1.09004 * 108.86816 * 185.55548 * 26 25 24 46 46 H 1.09002 * 109.21622 * 174.79025 * 27 26 25 47 47 H 1.08999 * 109.21721 * 55.41868 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.0010 -0.4206 -3.6856 7 1 2.5614 -1.3383 -3.7866 8 6 1.6341 0.2966 -4.8161 9 7 0.9507 1.4147 -4.6930 10 14 2.1103 -0.3252 -6.5120 11 1 1.0399 -1.2135 -7.0320 12 1 2.2861 0.8282 -7.4307 13 1 3.3832 -1.0845 -6.4214 14 6 2.0401 -0.7212 1.2492 15 7 1.6526 0.0353 2.4424 16 6 1.9967 -0.4132 3.6659 17 8 2.6284 -1.4459 3.7793 18 6 1.6069 0.3490 4.8675 19 6 0.8795 1.5379 4.7445 20 6 0.5179 2.2449 5.8701 21 6 0.8692 1.7865 7.1304 22 6 1.5880 0.6121 7.2651 23 6 1.9610 -0.1098 6.1402 24 8 2.6715 -1.2627 6.2834 25 6 1.9722 -2.3575 6.8792 26 6 2.0247 -2.2679 8.3964 27 6 1.2919 -1.0468 8.9295 28 8 1.9360 0.1560 8.5036 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8898 32 1 3.1263 -0.7993 -1.2057 33 1 1.6055 -1.7197 -1.2953 34 1 1.1487 0.8595 -2.3517 35 1 0.6946 1.9161 -5.4830 36 1 3.1264 -0.7994 1.2054 37 1 1.6056 -1.7198 1.2951 38 1 1.1490 0.8593 2.3518 39 1 0.6013 1.9016 3.7664 40 1 -0.0432 3.1624 5.7701 41 1 0.5821 2.3471 8.0078 42 1 0.9320 -2.3387 6.5538 43 1 2.4312 -3.2931 6.5595 44 1 3.0669 -2.2201 8.7121 45 1 1.5706 -3.1644 8.8184 46 1 1.2817 -1.0819 10.0189 47 1 0.2662 -1.0546 8.5608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714442792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:32 Heat of formation + Delta-G solvation = -96.965419 kcal Electronic energy + Delta-G solvation = -28453.589451 eV Core-core repulsion = 24408.356892 eV Total energy + Delta-G solvation = -4045.232559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10412 -40.63923 -38.58113 -38.51790 -37.99372 -35.97639 -34.27323 -33.80197 -32.35821 -31.50263 -30.18346 -27.94472 -27.54755 -27.04654 -25.16054 -24.07390 -23.02238 -22.77279 -21.68957 -21.22449 -19.78397 -19.14614 -18.37933 -18.17115 -17.43248 -17.09505 -16.73298 -16.47186 -16.37545 -16.17533 -15.90594 -15.63178 -15.40850 -15.20941 -15.07647 -14.81188 -14.64247 -14.21212 -14.11128 -13.65766 -13.56993 -13.39806 -13.13360 -12.96961 -12.92496 -12.79063 -12.21542 -12.18776 -12.15309 -11.99153 -11.93507 -11.71189 -11.65601 -11.39298 -11.30081 -10.94242 -10.72423 -10.22774 -9.88926 -9.58467 -8.99033 -7.95289 -5.23337 -0.35855 0.02439 1.47921 1.49166 1.57756 1.74232 2.03382 2.41896 2.48228 2.56927 2.83783 3.38304 3.56564 3.67657 3.70444 3.75695 3.89230 3.96246 4.04896 4.07055 4.15212 4.24014 4.29120 4.32457 4.35332 4.37655 4.52897 4.54874 4.70031 4.75418 4.77636 4.81363 4.93987 5.03271 5.04560 5.05154 5.12991 5.15868 5.25504 5.31200 5.39113 5.48263 5.50435 5.53159 6.10635 6.27587 6.48500 6.52156 7.18190 7.34498 8.09402 8.34253 9.28058 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028383 B = 0.001985 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.276454 B =14101.983678 C =14831.641231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.080 0.920 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.247 4.247 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.294 1.294 13 H -0.272 1.272 14 C 0.140 3.860 15 N -0.708 5.708 16 C 0.552 3.448 17 O -0.562 6.562 18 C -0.159 4.159 19 C -0.074 4.074 20 C -0.107 4.107 21 C -0.085 4.085 22 C 0.039 3.961 23 C 0.098 3.902 24 O -0.330 6.330 25 C 0.058 3.942 26 C -0.183 4.183 27 C 0.053 3.947 28 O -0.335 6.335 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.018 0.982 33 H 0.021 0.979 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.413 0.587 39 H 0.161 0.839 40 H 0.178 0.822 41 H 0.165 0.835 42 H 0.055 0.945 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.131 0.869 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 -0.104 32.204 32.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.099 0.901 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.378 4.378 7 H 0.090 0.910 8 C -0.267 4.267 9 N -0.617 5.617 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.220 1.220 13 H -0.197 1.197 14 C 0.016 3.984 15 N -0.361 5.361 16 C 0.340 3.660 17 O -0.442 6.442 18 C -0.163 4.163 19 C -0.093 4.093 20 C -0.124 4.124 21 C -0.104 4.104 22 C -0.005 4.005 23 C 0.052 3.948 24 O -0.246 6.246 25 C -0.016 4.016 26 C -0.220 4.220 27 C -0.021 4.021 28 O -0.252 6.252 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.210 0.790 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.251 0.749 39 H 0.179 0.821 40 H 0.196 0.804 41 H 0.183 0.817 42 H 0.074 0.926 43 H 0.121 0.879 44 H 0.092 0.908 45 H 0.139 0.861 46 H 0.149 0.851 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.472 -0.957 32.230 32.552 hybrid contribution -0.057 -0.065 -1.358 1.361 sum -4.529 -1.022 30.872 31.219 Atomic orbital electron populations 1.21732 0.93643 1.01997 1.01903 1.21332 0.97339 1.00091 0.92503 0.90139 1.20718 0.96484 0.94179 0.85693 1.42492 1.66826 1.27807 1.01268 1.19617 1.27906 1.05249 0.85077 0.90955 1.25539 1.01750 0.97913 1.01476 1.69797 1.45064 1.17755 1.29108 0.85151 0.77993 0.76822 0.79861 1.21366 1.22043 1.19718 1.21142 0.99496 0.95065 0.82727 1.45782 1.57492 1.28141 1.04734 1.18345 0.79225 0.84730 0.83699 1.90794 1.40773 1.25589 1.87015 1.20093 1.04723 0.99762 0.91696 1.21670 0.94357 0.91612 1.01658 1.21471 0.99734 1.01148 0.90083 1.21669 0.93892 0.94514 1.00311 1.19321 1.00360 0.96666 0.84111 1.19509 0.94031 0.89126 0.92101 1.86355 1.37530 1.19346 1.81415 1.22763 0.96887 0.88585 0.93354 1.22494 1.03473 1.00869 0.95169 1.22939 0.95340 0.81990 1.01825 1.86367 1.66507 1.43201 1.29169 0.93008 0.90398 0.93663 0.96400 0.96056 0.78991 0.93942 0.92332 0.91690 0.74894 0.82139 0.80418 0.81713 0.92646 0.87908 0.90831 0.86100 0.85111 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 8.94 71.98 0.64 -3.10 16 2 C -0.09 -2.79 2.46 -10.79 -0.03 -2.82 16 3 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 4 C 0.16 6.21 5.65 86.38 0.49 6.70 16 5 N -0.74 -37.28 5.33 -343.46 -1.83 -39.11 16 6 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 7 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 8 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 9 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 10 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 14 C 0.14 3.86 5.06 86.38 0.44 4.30 16 15 N -0.71 -16.56 5.24 -466.27 -2.44 -19.00 16 16 C 0.55 15.59 7.77 86.70 0.67 16.27 16 17 O -0.56 -20.62 15.18 16.82 0.26 -20.36 16 18 C -0.16 -3.66 5.88 -20.03 -0.12 -3.78 16 19 C -0.07 -1.06 9.54 22.56 0.22 -0.84 16 20 C -0.11 -1.07 10.02 22.25 0.22 -0.85 16 21 C -0.09 -1.10 9.99 22.39 0.22 -0.88 16 22 C 0.04 0.79 5.73 22.42 0.13 0.91 16 23 C 0.10 2.45 5.73 22.79 0.13 2.59 16 24 O -0.33 -9.53 8.26 -68.07 -0.56 -10.09 16 25 C 0.06 1.18 6.51 71.68 0.47 1.64 16 26 C -0.18 -2.43 5.92 29.98 0.18 -2.25 16 27 C 0.05 0.65 6.51 71.67 0.47 1.12 16 28 O -0.34 -6.53 10.16 -84.44 -0.86 -7.39 16 29 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.08 1.57 7.18 -2.39 -0.02 1.55 16 31 H 0.04 1.50 7.18 -2.39 -0.02 1.48 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.38 19.77 6.85 -92.71 -0.64 19.13 16 35 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.41 7.00 5.70 -92.71 -0.53 6.47 16 39 H 0.16 1.38 6.42 -2.91 -0.02 1.36 16 40 H 0.18 0.46 8.06 -2.91 -0.02 0.43 16 41 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.06 1.05 7.93 -2.39 -0.02 1.03 16 43 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.69 7.93 -2.39 -0.02 0.67 16 Total: -1.00 -78.53 382.19 2.14 -76.38 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.17 Total: 27.32 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 5.44 Total: 2.18 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -3.99 Total: -116.37 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -1.17 Total: -37.84 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -78.53 2.14 -76.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714442792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.581 kcal (2) G-P(sol) polarization free energy of solvation -78.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds