Wall clock time and date at job start Tue Mar 31 2020 18:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47100 * 2 1 4 4 O 1.42899 * 109.47150 * 119.99804 * 2 1 3 5 5 C 1.42903 * 113.99985 * 269.99941 * 4 2 1 6 6 C 1.50699 * 109.46825 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00048 * 269.72514 * 6 5 4 8 8 C 1.38238 * 119.99811 * 179.76519 * 7 6 5 9 9 C 1.38231 * 120.00153 * 0.50805 * 8 7 6 10 10 C 1.38236 * 119.99716 * 359.74740 * 9 8 7 11 11 C 1.38229 * 120.00479 * 359.97438 * 10 9 8 12 12 C 1.50693 * 109.46919 * 240.00118 * 2 1 3 13 13 O 1.21278 * 120.00092 * 244.99831 * 12 2 1 14 14 N 1.34780 * 120.00188 * 65.00014 * 12 2 1 15 15 C 1.46504 * 119.99814 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.46941 * 180.02562 * 15 14 12 17 17 O 1.42905 * 113.28091 * 313.06421 * 16 15 14 18 18 C 1.53495 * 114.20669 * 180.02562 * 16 15 14 19 19 N 1.47066 * 87.98658 * 220.34216 * 18 16 15 20 20 C 1.36937 * 136.06113 * 206.85859 * 19 18 16 21 21 H 1.07995 * 120.00001 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00320 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99557 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47363 * 60.00463 * 24 22 20 26 26 H 1.48506 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47174 * 300.00290 * 24 22 20 28 28 C 1.47067 * 87.88528 * 27.11900 * 19 18 16 29 29 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46854 * 300.00270 * 1 2 3 31 31 H 1.08996 * 109.47367 * 59.99720 * 1 2 3 32 32 H 1.08994 * 109.47096 * 299.99962 * 5 4 2 33 33 H 1.09000 * 109.46675 * 60.00233 * 5 4 2 34 34 H 1.07998 * 120.00232 * 0.02562 * 7 6 5 35 35 H 1.08004 * 119.99798 * 180.23183 * 8 7 6 36 36 H 1.07999 * 120.00377 * 179.71570 * 9 8 7 37 37 H 1.08005 * 119.99546 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.00210 * 179.97438 * 11 10 9 39 39 H 0.96992 * 119.99879 * 359.97438 * 14 12 2 40 40 H 1.09003 * 109.47373 * 59.99924 * 15 14 12 41 41 H 1.08997 * 109.47135 * 299.99923 * 15 14 12 42 42 H 0.96696 * 113.99817 * 46.93921 * 17 16 15 43 43 H 1.09005 * 113.46950 * 105.56781 * 18 16 15 44 44 H 1.08994 * 113.52293 * 335.13266 * 18 16 15 45 45 H 0.96999 * 119.99537 * 179.97438 * 23 22 20 46 46 H 1.09007 * 113.46858 * 87.65629 * 28 19 18 47 47 H 1.08993 * 113.47208 * 218.09965 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7015 -0.6281 3.4610 7 6 1.8031 -1.1953 4.3453 8 6 2.2629 -1.9434 5.4130 9 6 3.6213 -2.1156 5.6023 10 6 4.5199 -1.5439 4.7209 11 6 4.0600 -0.8006 3.6500 12 6 2.0323 -0.7104 -1.2304 13 8 2.6529 -1.7466 -1.1215 14 7 1.7918 -0.1941 -2.4520 15 6 2.2797 -0.8851 -3.6482 16 6 1.8756 -0.0945 -4.8942 17 8 0.5063 0.3142 -4.8843 18 6 2.3340 -0.7257 -6.2162 19 7 2.6573 0.6283 -6.6905 20 6 2.7364 1.2547 -7.9056 21 1 2.5270 0.7049 -8.8112 22 6 3.0849 2.5967 -7.9734 23 7 3.3397 3.2669 -6.8696 24 14 3.1920 3.4513 -9.6309 25 1 1.8710 3.3893 -10.3062 26 1 3.5804 4.8708 -9.4317 27 1 4.2105 2.7733 -10.4725 28 6 2.8648 1.0119 -5.2860 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9320 0.9514 2.0450 33 1 1.2538 0.6547 2.5588 34 1 0.7419 -1.0575 4.1998 35 1 1.5609 -2.3897 6.1018 36 1 3.9807 -2.6962 6.4390 37 1 5.5813 -1.6781 4.8691 38 1 4.7620 -0.3537 2.9617 39 1 1.2952 0.6344 -2.5392 40 1 1.8447 -1.8835 -3.6940 41 1 3.3660 -0.9638 -3.6047 42 1 0.2204 0.7112 -4.0503 43 1 1.5263 -1.1997 -6.7740 44 1 3.2076 -1.3690 -6.1112 45 1 3.5835 4.2046 -6.9170 46 1 3.8800 0.8316 -4.9322 47 1 2.5086 2.0152 -5.0528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716943707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:32 Heat of formation + Delta-G solvation = -35.907551 kcal Electronic energy + Delta-G solvation = -27986.537949 eV Core-core repulsion = 23943.953057 eV Total energy + Delta-G solvation = -4042.584891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.22914 -39.57790 -38.87090 -37.54236 -35.04020 -34.03702 -32.81836 -32.05590 -31.18912 -31.09089 -28.54880 -26.53665 -26.17287 -24.82020 -24.01170 -22.86845 -21.94390 -21.63659 -20.50223 -19.41952 -18.07620 -17.45770 -16.90013 -16.72289 -16.11334 -15.87010 -15.63326 -15.43779 -15.15434 -14.87225 -14.45196 -14.20632 -13.97544 -13.70028 -13.63843 -13.53582 -13.21929 -13.13645 -12.81685 -12.72163 -12.61007 -12.35954 -12.25543 -11.84328 -11.67811 -11.32610 -11.21080 -11.09888 -10.90948 -10.72673 -10.48082 -10.19755 -9.96654 -9.60090 -9.48912 -9.19643 -9.18817 -9.12337 -8.90524 -8.85059 -6.92622 -5.79600 -3.11339 0.95684 1.12669 2.60160 2.74677 3.39243 3.41928 3.42897 3.44071 3.87763 4.39816 4.42044 4.48499 4.49850 4.59007 4.67000 4.71296 4.77906 4.85195 4.94502 4.98223 5.00903 5.19795 5.22759 5.28232 5.30928 5.34850 5.41444 5.58176 5.66647 5.74332 5.74764 5.81182 6.00592 6.14905 6.21611 6.27502 6.29835 6.37185 6.50706 6.51273 6.68555 6.78634 6.96335 7.12397 7.43310 7.46431 7.92867 8.07988 8.21941 9.00518 9.67271 10.58049 11.38238 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.001905 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.077954 B =14693.096631 C =14952.229605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.069 3.931 3 H 0.089 0.911 4 O -0.349 6.349 5 C 0.099 3.901 6 C -0.089 4.089 7 C -0.098 4.098 8 C -0.125 4.125 9 C -0.115 4.115 10 C -0.124 4.124 11 C -0.095 4.095 12 C 0.515 3.485 13 O -0.519 6.519 14 N -0.722 5.722 15 C 0.109 3.891 16 C 0.057 3.943 17 O -0.521 6.521 18 C 0.134 3.866 19 N -0.600 5.600 20 C -0.213 4.213 21 H 0.082 0.918 22 C -0.009 4.009 23 N -0.923 5.923 24 Si 0.916 3.084 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.137 3.863 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.397 0.603 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.359 0.641 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.254 0.746 46 H 0.033 0.967 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 -5.855 25.128 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 H 0.106 0.894 4 O -0.268 6.268 5 C 0.023 3.977 6 C -0.089 4.089 7 C -0.116 4.116 8 C -0.143 4.143 9 C -0.133 4.133 10 C -0.142 4.142 11 C -0.113 4.113 12 C 0.299 3.701 13 O -0.394 6.394 14 N -0.378 5.378 15 C -0.015 4.015 16 C 0.014 3.986 17 O -0.324 6.324 18 C 0.007 3.993 19 N -0.325 5.325 20 C -0.341 4.341 21 H 0.100 0.900 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.746 3.254 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.010 3.990 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.232 0.768 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.205 0.795 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.707 -6.757 24.326 25.517 hybrid contribution -0.061 1.392 -0.336 1.433 sum -3.767 -5.365 23.990 24.870 Atomic orbital electron populations 1.22242 0.93374 1.03956 1.03268 1.21921 0.95202 0.96454 0.85642 0.89351 1.88140 1.86517 1.33675 1.18428 1.21442 0.99789 0.91749 0.84743 1.19554 0.93712 1.00043 0.95573 1.21063 0.99458 0.96618 0.94456 1.21144 0.95779 0.99254 0.98167 1.21208 0.93468 0.99356 0.99291 1.21169 0.99872 0.98006 0.95118 1.21119 0.94970 0.97961 0.97267 1.20288 0.80037 0.85655 0.84103 1.90729 1.39200 1.23088 1.86347 1.45870 1.58318 1.27850 1.05723 1.21952 1.00408 0.96363 0.82813 1.23432 0.83652 0.98184 0.93317 1.86655 1.24898 1.81985 1.38860 1.22383 0.96873 0.90368 0.89678 1.45265 1.80100 1.04941 1.02149 1.18869 1.40282 0.92378 0.82530 0.90015 1.24787 1.01863 0.96407 0.97452 1.69802 1.52666 1.08938 1.25562 0.86143 0.77923 0.78561 0.82800 1.21010 1.21557 1.21135 1.22748 0.94002 0.97373 0.84858 0.90978 0.91219 0.90639 0.92090 0.92129 0.85926 0.85935 0.86042 0.85853 0.85788 0.76784 0.90953 0.90137 0.79501 0.93024 0.93250 0.93641 0.94902 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.48 37.16 0.35 -0.97 16 2 C 0.07 0.71 3.13 -27.88 -0.09 0.62 16 3 H 0.09 0.69 7.79 -51.93 -0.40 0.29 16 4 O -0.35 -4.26 9.51 -55.09 -0.52 -4.79 16 5 C 0.10 0.89 5.87 36.01 0.21 1.10 16 6 C -0.09 -0.86 5.51 -104.62 -0.58 -1.44 16 7 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 8 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 9 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 10 C -0.12 -1.05 10.05 -39.59 -0.40 -1.44 16 11 C -0.10 -0.91 9.70 -39.58 -0.38 -1.29 16 12 C 0.51 7.08 7.18 -10.99 -0.08 7.01 16 13 O -0.52 -9.53 16.51 -14.30 -0.24 -9.76 16 14 N -0.72 -9.01 5.30 -60.29 -0.32 -9.33 16 15 C 0.11 1.64 5.43 -4.04 -0.02 1.62 16 16 C 0.06 1.03 1.73 -90.11 -0.16 0.87 16 17 O -0.52 -9.28 13.56 -35.23 -0.48 -9.75 16 18 C 0.13 2.77 8.11 -8.51 -0.07 2.70 16 19 N -0.60 -15.47 3.78 -184.75 -0.70 -16.17 16 20 C -0.21 -6.05 10.75 -15.06 -0.16 -6.21 16 21 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.92 -27.19 11.51 55.49 0.64 -26.55 16 24 Si 0.92 22.20 29.55 -169.99 -5.02 17.18 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 C 0.14 3.09 6.83 -8.51 -0.06 3.04 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 31 H 0.07 0.46 7.92 -51.93 -0.41 0.05 16 32 H 0.06 0.48 8.03 -51.93 -0.42 0.06 16 33 H 0.06 0.41 7.81 -51.93 -0.41 0.01 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 36 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.40 3.94 6.73 -40.82 -0.27 3.66 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 42 H 0.36 4.59 7.20 45.56 0.33 4.92 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.03 0.76 7.93 -51.93 -0.41 0.34 16 47 H 0.08 1.91 7.12 -51.93 -0.37 1.54 16 LS Contribution 395.34 15.07 5.96 5.96 Total: -1.00 -36.84 395.34 -9.92 -46.76 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.53 Total: 5.14 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -2.70 Total: 1.32 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.38 Total: -52.05 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -1.24 Total: -24.30 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.84 -9.92 -46.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716943707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.854 kcal (2) G-P(sol) polarization free energy of solvation -36.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds