Wall clock time and date at job start Tue Mar 31 2020 18:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47100 * 2 1 4 4 O 1.42899 * 109.47150 * 119.99804 * 2 1 3 5 5 C 1.42903 * 113.99985 * 269.99941 * 4 2 1 6 6 C 1.50699 * 109.46825 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00048 * 269.72514 * 6 5 4 8 8 C 1.38238 * 119.99811 * 179.76519 * 7 6 5 9 9 C 1.38231 * 120.00153 * 0.50805 * 8 7 6 10 10 C 1.38236 * 119.99716 * 359.74740 * 9 8 7 11 11 C 1.38229 * 120.00479 * 359.97438 * 10 9 8 12 12 C 1.50693 * 109.46919 * 240.00118 * 2 1 3 13 13 O 1.21278 * 120.00092 * 244.99831 * 12 2 1 14 14 N 1.34780 * 120.00188 * 65.00014 * 12 2 1 15 15 C 1.46504 * 119.99814 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.46941 * 180.02562 * 15 14 12 17 17 O 1.42905 * 113.28091 * 313.06421 * 16 15 14 18 18 C 1.53495 * 114.20669 * 180.02562 * 16 15 14 19 19 N 1.47066 * 87.98658 * 220.34216 * 18 16 15 20 20 C 1.36937 * 136.06113 * 206.85859 * 19 18 16 21 21 H 1.07995 * 120.00001 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00320 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99557 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47363 * 60.00463 * 24 22 20 26 26 H 1.48506 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47174 * 300.00290 * 24 22 20 28 28 C 1.47067 * 87.88528 * 27.11900 * 19 18 16 29 29 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46854 * 300.00270 * 1 2 3 31 31 H 1.08996 * 109.47367 * 59.99720 * 1 2 3 32 32 H 1.08994 * 109.47096 * 299.99962 * 5 4 2 33 33 H 1.09000 * 109.46675 * 60.00233 * 5 4 2 34 34 H 1.07998 * 120.00232 * 0.02562 * 7 6 5 35 35 H 1.08004 * 119.99798 * 180.23183 * 8 7 6 36 36 H 1.07999 * 120.00377 * 179.71570 * 9 8 7 37 37 H 1.08005 * 119.99546 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.00210 * 179.97438 * 11 10 9 39 39 H 0.96992 * 119.99879 * 359.97438 * 14 12 2 40 40 H 1.09003 * 109.47373 * 59.99924 * 15 14 12 41 41 H 1.08997 * 109.47135 * 299.99923 * 15 14 12 42 42 H 0.96696 * 113.99817 * 46.93921 * 17 16 15 43 43 H 1.09005 * 113.46950 * 105.56781 * 18 16 15 44 44 H 1.08994 * 113.52293 * 335.13266 * 18 16 15 45 45 H 0.96999 * 119.99537 * 179.97438 * 23 22 20 46 46 H 1.09007 * 113.46858 * 87.65629 * 28 19 18 47 47 H 1.08993 * 113.47208 * 218.09965 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7015 -0.6281 3.4610 7 6 1.8031 -1.1953 4.3453 8 6 2.2629 -1.9434 5.4130 9 6 3.6213 -2.1156 5.6023 10 6 4.5199 -1.5439 4.7209 11 6 4.0600 -0.8006 3.6500 12 6 2.0323 -0.7104 -1.2304 13 8 2.6529 -1.7466 -1.1215 14 7 1.7918 -0.1941 -2.4520 15 6 2.2797 -0.8851 -3.6482 16 6 1.8756 -0.0945 -4.8942 17 8 0.5063 0.3142 -4.8843 18 6 2.3340 -0.7257 -6.2162 19 7 2.6573 0.6283 -6.6905 20 6 2.7364 1.2547 -7.9056 21 1 2.5270 0.7049 -8.8112 22 6 3.0849 2.5967 -7.9734 23 7 3.3397 3.2669 -6.8696 24 14 3.1920 3.4513 -9.6309 25 1 1.8710 3.3893 -10.3062 26 1 3.5804 4.8708 -9.4317 27 1 4.2105 2.7733 -10.4725 28 6 2.8648 1.0119 -5.2860 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9320 0.9514 2.0450 33 1 1.2538 0.6547 2.5588 34 1 0.7419 -1.0575 4.1998 35 1 1.5609 -2.3897 6.1018 36 1 3.9807 -2.6962 6.4390 37 1 5.5813 -1.6781 4.8691 38 1 4.7620 -0.3537 2.9617 39 1 1.2952 0.6344 -2.5392 40 1 1.8447 -1.8835 -3.6940 41 1 3.3660 -0.9638 -3.6047 42 1 0.2204 0.7112 -4.0503 43 1 1.5263 -1.1997 -6.7740 44 1 3.2076 -1.3690 -6.1112 45 1 3.5835 4.2046 -6.9170 46 1 3.8800 0.8316 -4.9322 47 1 2.5086 2.0152 -5.0528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716943707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:31 Heat of formation + Delta-G solvation = -62.409425 kcal Electronic energy + Delta-G solvation = -27987.687156 eV Core-core repulsion = 23943.953057 eV Total energy + Delta-G solvation = -4043.734099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.37533 -40.51410 -40.05455 -38.43228 -36.60280 -35.31009 -34.10382 -33.47672 -31.88255 -31.78969 -30.15824 -27.84299 -27.12755 -26.55014 -25.05762 -23.61253 -23.47506 -22.26229 -21.57806 -21.02407 -19.23667 -18.63809 -18.22460 -17.61373 -17.24058 -17.03287 -16.72203 -16.53019 -16.24160 -16.04581 -15.77730 -15.49987 -15.30937 -15.03891 -14.61690 -14.47414 -14.26994 -14.23541 -13.90378 -13.81176 -13.58763 -13.35637 -13.27392 -13.01267 -12.96473 -12.79869 -12.49983 -12.41815 -12.28130 -11.92120 -11.84368 -11.77893 -11.39087 -11.04929 -10.94534 -10.68088 -10.51673 -10.17932 -9.82297 -9.76313 -8.95220 -7.92426 -5.25186 0.32062 0.49974 1.45230 1.49001 1.54068 1.54754 1.79308 2.45914 2.69125 3.03633 3.17090 3.29395 3.33979 3.52883 3.66518 3.87096 3.89272 3.90599 3.99959 4.10909 4.15489 4.28804 4.35576 4.37671 4.40284 4.64058 4.67772 4.73295 4.74708 4.76445 4.77063 4.84419 4.93008 5.07640 5.14823 5.15196 5.22765 5.25145 5.31318 5.46763 5.54475 5.60798 5.66241 5.90401 6.03136 6.10709 6.44450 6.83235 6.89499 7.16193 7.57257 8.56002 9.24898 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.001905 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.077954 B =14693.096631 C =14952.229605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.072 3.928 3 H 0.116 0.884 4 O -0.381 6.381 5 C 0.097 3.903 6 C -0.109 4.109 7 C -0.109 4.109 8 C -0.132 4.132 9 C -0.122 4.122 10 C -0.135 4.135 11 C -0.117 4.117 12 C 0.513 3.487 13 O -0.570 6.570 14 N -0.711 5.711 15 C 0.123 3.877 16 C 0.096 3.904 17 O -0.535 6.535 18 C 0.126 3.874 19 N -0.634 5.634 20 C -0.230 4.230 21 H 0.083 0.917 22 C -0.067 4.067 23 N -0.951 5.951 24 Si 0.982 3.018 25 H -0.277 1.277 26 H -0.292 1.292 27 H -0.277 1.277 28 C 0.135 3.865 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.412 0.588 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.382 0.618 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.249 0.751 46 H 0.027 0.973 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 -5.859 26.181 27.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 H 0.134 0.866 4 O -0.300 6.300 5 C 0.021 3.979 6 C -0.109 4.109 7 C -0.127 4.127 8 C -0.150 4.150 9 C -0.140 4.140 10 C -0.153 4.153 11 C -0.136 4.136 12 C 0.300 3.700 13 O -0.449 6.449 14 N -0.367 5.367 15 C -0.002 4.002 16 C 0.053 3.947 17 O -0.341 6.341 18 C 0.001 3.999 19 N -0.360 5.360 20 C -0.358 4.358 21 H 0.101 0.899 22 C -0.260 4.260 23 N -0.600 5.600 24 Si 0.810 3.190 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.009 3.991 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.140 0.860 39 H 0.249 0.751 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.232 0.768 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.058 0.942 46 H 0.044 0.956 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.001 -6.757 25.400 26.755 hybrid contribution 0.326 1.336 -0.605 1.503 sum -4.675 -5.421 24.795 25.807 Atomic orbital electron populations 1.22251 0.91161 1.03584 1.05316 1.22036 0.96683 0.96740 0.83462 0.86646 1.88099 1.86941 1.35440 1.19512 1.21602 1.01202 0.91414 0.83649 1.19802 0.94001 1.00825 0.96290 1.21336 1.00169 0.96639 0.94567 1.21496 0.96377 0.98831 0.98252 1.21550 0.93539 0.99162 0.99701 1.21444 1.00979 0.97844 0.95007 1.21311 0.95335 0.98894 0.98019 1.21021 0.78867 0.85037 0.85109 1.90706 1.41594 1.25489 1.87065 1.45722 1.57962 1.28114 1.04859 1.21625 1.00032 0.96210 0.82342 1.22807 0.82841 0.95496 0.93586 1.86606 1.24233 1.82202 1.41096 1.22620 0.97705 0.88855 0.90766 1.45625 1.80457 1.07464 1.02443 1.19255 1.39606 0.92976 0.83930 0.89900 1.25637 1.02235 0.97145 1.00964 1.69979 1.53854 1.08776 1.27401 0.85104 0.78114 0.77036 0.78777 1.20259 1.21795 1.20351 1.22748 0.94889 0.97460 0.84050 0.92528 0.89020 0.88769 0.91430 0.89741 0.84501 0.83735 0.83829 0.84432 0.85963 0.75057 0.90193 0.90898 0.76823 0.92816 0.91265 0.94195 0.95572 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.48 71.98 0.68 -1.42 16 2 C 0.07 1.33 3.13 29.85 0.09 1.42 16 3 H 0.12 1.49 7.79 -2.39 -0.02 1.48 16 4 O -0.38 -8.92 9.51 -129.99 -1.24 -10.16 16 5 C 0.10 1.62 5.87 71.24 0.42 2.04 16 6 C -0.11 -2.07 5.51 -19.86 -0.11 -2.18 16 7 C -0.11 -1.78 9.70 22.27 0.22 -1.57 16 8 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 9 C -0.12 -1.75 10.05 22.27 0.22 -1.53 16 10 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 11 C -0.12 -2.26 9.70 22.27 0.22 -2.05 16 12 C 0.51 13.55 7.18 87.65 0.63 14.18 16 13 O -0.57 -20.93 16.51 15.97 0.26 -20.67 16 14 N -0.71 -16.55 5.30 -463.06 -2.46 -19.00 16 15 C 0.12 3.55 5.43 86.38 0.47 4.01 16 16 C 0.10 3.35 1.73 -10.46 -0.02 3.33 16 17 O -0.53 -18.11 13.56 -148.98 -2.02 -20.13 16 18 C 0.13 5.13 8.11 83.18 0.67 5.80 16 19 N -0.63 -32.91 3.78 -738.90 -2.79 -35.71 16 20 C -0.23 -13.12 10.75 84.03 0.90 -12.22 16 21 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 22 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 23 N -0.95 -56.99 11.51 21.65 0.25 -56.74 16 24 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 28 C 0.13 6.15 6.83 83.18 0.57 6.72 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.79 7.87 -2.39 -0.02 0.77 16 31 H 0.09 0.83 7.92 -2.39 -0.02 0.81 16 32 H 0.07 0.99 8.03 -2.39 -0.02 0.97 16 33 H 0.08 0.95 7.81 -2.39 -0.02 0.93 16 34 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.41 7.18 6.73 -92.71 -0.62 6.56 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.07 2.27 7.89 -2.39 -0.02 2.25 16 42 H 0.38 8.82 7.20 -74.06 -0.53 8.28 16 43 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.07 2.55 8.10 -2.39 -0.02 2.53 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 46 H 0.03 1.23 7.93 -2.38 -0.02 1.21 16 47 H 0.05 2.47 7.12 -2.39 -0.02 2.46 16 Total: -1.00 -81.29 395.34 -0.26 -81.55 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.17 Total: 23.41 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.88 Total: 9.52 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -5.00 Total: -111.45 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -2.99 Total: -50.96 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -81.29 -0.26 -81.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716943707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.145 kcal (2) G-P(sol) polarization free energy of solvation -81.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds