Wall clock time and date at job start Tue Mar 31 2020 18:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47088 * 2 1 4 4 C 1.50697 * 109.46808 * 119.99482 * 2 1 3 5 5 O 1.21287 * 119.99751 * 120.00251 * 4 2 1 6 6 N 1.34780 * 120.00542 * 299.99839 * 4 2 1 7 7 C 1.46493 * 120.00293 * 180.02562 * 6 4 2 8 8 C 1.53007 * 115.54988 * 180.02562 * 7 6 4 9 9 C 1.53043 * 109.45620 * 85.61135 * 8 7 6 10 10 C 1.53197 * 109.30665 * 178.60134 * 9 8 7 11 11 N 1.46924 * 108.76765 * 54.65767 * 10 9 8 12 12 C 1.36938 * 120.63683 * 126.35960 * 11 10 9 13 13 H 1.07995 * 120.00061 * 207.70497 * 12 11 10 14 14 C 1.38810 * 119.99621 * 27.69457 * 12 11 10 15 15 N 1.31622 * 120.00040 * 17.35920 * 14 12 11 16 16 Si 1.86799 * 120.00074 * 197.35135 * 14 12 11 17 17 H 1.48501 * 109.47103 * 60.00551 * 16 14 12 18 18 H 1.48495 * 109.47135 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47048 * 300.00606 * 16 14 12 20 20 C 1.46934 * 118.73730 * 306.38110 * 11 10 9 21 21 C 1.53036 * 109.45791 * 325.55891 * 8 7 6 22 22 C 1.52995 * 117.50090 * 34.33279 * 7 6 4 23 23 C 1.52998 * 117.49870 * 325.67021 * 7 6 4 24 24 C 1.53001 * 109.47368 * 239.99686 * 2 1 3 25 25 F 1.39904 * 109.46645 * 300.00189 * 24 2 1 26 26 F 1.39901 * 109.47067 * 60.00222 * 24 2 1 27 27 F 1.39903 * 109.47013 * 180.02562 * 24 2 1 28 28 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47015 * 300.00685 * 1 2 3 30 30 H 1.09008 * 109.46784 * 60.00098 * 1 2 3 31 31 H 0.97003 * 119.99086 * 0.02562 * 6 4 2 32 32 H 1.09000 * 109.45635 * 205.58069 * 8 7 6 33 33 H 1.08995 * 109.49698 * 298.56370 * 9 8 7 34 34 H 1.08994 * 109.50201 * 58.66584 * 9 8 7 35 35 H 1.08996 * 109.59940 * 294.86772 * 10 9 8 36 36 H 1.09001 * 109.58118 * 174.43482 * 10 9 8 37 37 H 0.96999 * 120.00028 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.58268 * 293.82301 * 20 11 10 39 39 H 1.08994 * 109.58741 * 173.39516 * 20 11 10 40 40 H 1.09006 * 109.49524 * 301.33357 * 21 8 7 41 41 H 1.08997 * 109.50434 * 61.40151 * 21 8 7 42 42 H 1.09004 * 117.49954 * 359.97438 * 22 7 6 43 43 H 1.09005 * 117.50292 * 145.02004 * 22 7 6 44 44 H 1.09005 * 117.50114 * 214.97804 * 23 7 6 45 45 H 1.09001 * 117.50248 * 359.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4547 7 6 2.1955 -0.9400 3.6508 8 6 1.7642 -0.3310 4.9866 9 6 0.3906 -0.8810 5.3777 10 6 -0.0223 -0.2961 6.7321 11 7 0.0402 1.1696 6.6528 12 6 -1.0435 1.9338 6.9945 13 1 -1.1827 2.9054 6.5439 14 6 -1.9631 1.4596 7.9197 15 7 -1.6415 0.4613 8.7150 16 14 -3.6571 2.2382 8.0364 17 1 -4.3559 2.1007 6.7333 18 1 -4.4438 1.5556 9.0949 19 1 -3.5181 3.6776 8.3740 20 6 1.2877 1.8000 6.1995 21 6 1.6860 1.1913 4.8513 22 6 3.5844 -1.5777 3.5806 23 6 2.3349 -2.4620 3.5808 24 6 2.0401 -0.7213 -1.2492 25 9 1.5737 -2.0403 -1.2491 26 9 1.5738 -0.0618 -2.3915 27 9 3.4391 -0.7218 -1.2488 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.1488 0.5387 2.5435 32 1 2.4917 -0.5905 5.7557 33 1 -0.3424 -0.6005 4.6214 34 1 0.4410 -1.9673 5.4510 35 1 0.6589 -0.6496 7.5060 36 1 -1.0401 -0.6061 6.9689 37 1 -2.2840 0.1301 9.3619 38 1 2.0757 1.6173 6.9301 39 1 1.1343 2.8730 6.0850 40 1 2.6587 1.5801 4.5498 41 1 0.9411 1.4521 4.0996 42 1 4.1344 -1.4841 2.6441 43 1 4.1911 -1.5636 4.4860 44 1 2.1201 -3.0293 4.4865 45 1 2.0626 -2.9499 2.6449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725793174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:38 Heat of formation + Delta-G solvation = -146.233297 kcal Electronic energy + Delta-G solvation = -30637.108109 eV Core-core repulsion = 26047.882394 eV Total energy + Delta-G solvation = -4589.225715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.27875 -47.80379 -47.67659 -40.73921 -38.25537 -36.15906 -34.64873 -32.84439 -32.52181 -30.40403 -29.79027 -26.75905 -25.68901 -24.21055 -22.79722 -22.63563 -21.70440 -20.91953 -19.94914 -19.01924 -18.94483 -18.61924 -17.81110 -17.06843 -16.79639 -15.58201 -15.53468 -14.91555 -14.79134 -14.47664 -14.36047 -14.12506 -14.04769 -13.89107 -13.83925 -13.72708 -13.62129 -13.58531 -13.36747 -13.01593 -12.87651 -12.80773 -12.39011 -12.33063 -11.74964 -11.55543 -11.39881 -11.12532 -11.01775 -10.76516 -10.75574 -10.45725 -10.33654 -10.13951 -9.99655 -9.87164 -9.61305 -9.42071 -8.60782 -8.48382 -6.72777 -5.83582 -3.26010 2.22002 2.29840 2.82078 3.34211 3.40882 3.41065 3.43133 3.75024 3.86135 4.04690 4.35160 4.45098 4.48728 4.60726 4.76659 4.97882 5.09859 5.16074 5.20866 5.28114 5.36188 5.51508 5.60807 5.63803 5.68976 5.84816 5.90281 6.03771 6.11486 6.23458 6.38268 6.42687 6.46662 6.58581 6.64475 6.68068 6.74866 6.87620 7.27156 7.32763 7.61265 7.74257 7.91792 8.40165 9.16527 9.80083 10.36486 11.24805 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.003046 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.782495 B = 9189.200496 C =10006.404737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.164 4.164 3 H 0.139 0.861 4 C 0.520 3.480 5 O -0.519 6.519 6 N -0.678 5.678 7 C 0.107 3.893 8 C -0.042 4.042 9 C -0.132 4.132 10 C 0.170 3.830 11 N -0.592 5.592 12 C -0.255 4.255 13 H 0.065 0.935 14 C 0.004 3.996 15 N -0.902 5.902 16 Si 0.901 3.099 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.145 3.855 21 C -0.126 4.126 22 C -0.179 4.179 23 C -0.174 4.174 24 C 0.474 3.526 25 F -0.171 7.171 26 F -0.182 7.182 27 F -0.174 7.174 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.408 0.592 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.017 0.983 36 H 0.088 0.912 37 H 0.255 0.745 38 H 0.018 0.982 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 -1.347 -17.156 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 H 0.156 0.844 4 C 0.304 3.696 5 O -0.395 6.395 6 N -0.328 5.328 7 C 0.020 3.980 8 C -0.061 4.061 9 C -0.171 4.171 10 C 0.044 3.956 11 N -0.315 5.315 12 C -0.385 4.385 13 H 0.082 0.918 14 C -0.195 4.195 15 N -0.546 5.546 16 Si 0.731 3.269 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.209 1.209 20 C 0.019 3.981 21 C -0.166 4.166 22 C -0.217 4.217 23 C -0.212 4.212 24 C 0.420 3.580 25 F -0.153 7.153 26 F -0.164 7.164 27 F -0.155 7.155 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.246 0.754 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.123 0.877 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.358 -2.123 -17.103 18.739 hybrid contribution -1.041 0.683 -0.109 1.250 sum 6.316 -1.439 -17.212 18.391 Atomic orbital electron populations 1.21874 0.89053 1.04953 1.05120 1.22665 1.01553 1.03045 0.91418 0.84350 1.19717 0.80927 0.84825 0.84159 1.90773 1.37058 1.25284 1.86366 1.45269 1.52277 1.31493 1.03789 1.21013 0.98771 0.92416 0.85820 1.20801 0.98757 0.95495 0.91036 1.22246 0.94668 0.98812 1.01406 1.20794 1.01732 0.82867 0.90171 1.44063 1.09013 1.01391 1.77019 1.19129 0.99898 1.01388 1.18075 0.91758 1.25028 0.99844 0.99006 0.95639 1.70020 1.34191 1.29051 1.21341 0.86390 0.84474 0.78765 0.77247 1.21059 1.21628 1.20899 1.20883 0.89357 0.96053 0.91842 1.22038 0.99629 0.94478 1.00448 1.23460 0.91104 1.03686 1.03440 1.23364 1.01606 0.92648 1.03616 1.19741 0.75913 0.77899 0.84488 1.93211 1.88274 1.37126 1.96653 1.93183 1.88582 1.80871 1.53751 1.93218 1.29272 1.96358 1.96662 0.90411 0.89410 0.89853 0.75400 0.90155 0.92775 0.93002 0.96451 0.89398 0.93543 0.96388 0.92748 0.92825 0.92767 0.87722 0.88896 0.88664 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.85 37.16 0.33 -0.77 16 2 C -0.16 -1.44 2.71 -91.77 -0.25 -1.69 16 3 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.52 6.14 6.63 -10.99 -0.07 6.07 16 5 O -0.52 -7.71 10.31 5.55 0.06 -7.65 16 6 N -0.68 -7.83 5.28 -47.61 -0.25 -8.08 16 7 C 0.11 1.42 2.48 -131.82 -0.33 1.09 16 8 C -0.04 -0.62 2.28 -90.58 -0.21 -0.83 16 9 C -0.13 -2.30 5.22 -26.61 -0.14 -2.44 16 10 C 0.17 3.81 5.31 -3.71 -0.02 3.79 16 11 N -0.59 -13.87 2.99 -172.32 -0.52 -14.39 16 12 C -0.26 -6.67 9.59 -15.06 -0.14 -6.82 16 13 H 0.06 1.64 7.89 -52.49 -0.41 1.23 16 14 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 15 N -0.90 -25.38 11.19 55.49 0.62 -24.76 16 16 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.15 2.78 6.52 -3.70 -0.02 2.76 16 21 C -0.13 -1.89 4.83 -26.61 -0.13 -2.02 16 22 C -0.18 -2.38 9.37 -26.70 -0.25 -2.63 16 23 C -0.17 -2.40 8.91 -26.69 -0.24 -2.63 16 24 C 0.47 5.09 2.43 37.16 0.09 5.18 16 25 F -0.17 -2.15 15.88 2.25 0.04 -2.11 16 26 F -0.18 -1.79 16.80 2.25 0.04 -1.76 16 27 F -0.17 -2.16 16.40 2.25 0.04 -2.12 16 28 H 0.08 0.64 7.80 -51.93 -0.41 0.23 16 29 H 0.09 0.56 7.56 -51.93 -0.39 0.17 16 30 H 0.08 0.48 7.80 -51.92 -0.41 0.08 16 31 H 0.41 4.12 6.08 -40.82 -0.25 3.87 16 32 H 0.08 1.24 7.90 -51.93 -0.41 0.83 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.85 7.25 -51.93 -0.38 0.47 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 2.24 6.04 -51.93 -0.31 1.93 16 37 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.77 6.50 -51.93 -0.34 0.44 16 42 H 0.10 1.51 6.38 -51.93 -0.33 1.18 16 43 H 0.09 1.14 8.05 -51.93 -0.42 0.73 16 44 H 0.10 1.26 7.60 -51.93 -0.39 0.86 16 45 H 0.11 1.58 6.38 -51.93 -0.33 1.25 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -29.94 359.94 -7.49 -37.42 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.44 Total: 3.03 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.46 Total: -0.92 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.15 Total: -47.23 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.06 Total: -7.65 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.11 Total: -5.99 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.94 -7.49 -37.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725793174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.810 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds