Wall clock time and date at job start Tue Mar 31 2020 18:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47088 * 2 1 4 4 C 1.50697 * 109.46808 * 119.99482 * 2 1 3 5 5 O 1.21287 * 119.99751 * 120.00251 * 4 2 1 6 6 N 1.34780 * 120.00542 * 299.99839 * 4 2 1 7 7 C 1.46493 * 120.00293 * 180.02562 * 6 4 2 8 8 C 1.53007 * 115.54988 * 180.02562 * 7 6 4 9 9 C 1.53043 * 109.45620 * 85.61135 * 8 7 6 10 10 C 1.53197 * 109.30665 * 178.60134 * 9 8 7 11 11 N 1.46924 * 108.76765 * 54.65767 * 10 9 8 12 12 C 1.36938 * 120.63683 * 126.35960 * 11 10 9 13 13 H 1.07995 * 120.00061 * 207.70497 * 12 11 10 14 14 C 1.38810 * 119.99621 * 27.69457 * 12 11 10 15 15 N 1.31622 * 120.00040 * 17.35920 * 14 12 11 16 16 Si 1.86799 * 120.00074 * 197.35135 * 14 12 11 17 17 H 1.48501 * 109.47103 * 60.00551 * 16 14 12 18 18 H 1.48495 * 109.47135 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47048 * 300.00606 * 16 14 12 20 20 C 1.46934 * 118.73730 * 306.38110 * 11 10 9 21 21 C 1.53036 * 109.45791 * 325.55891 * 8 7 6 22 22 C 1.52995 * 117.50090 * 34.33279 * 7 6 4 23 23 C 1.52998 * 117.49870 * 325.67021 * 7 6 4 24 24 C 1.53001 * 109.47368 * 239.99686 * 2 1 3 25 25 F 1.39904 * 109.46645 * 300.00189 * 24 2 1 26 26 F 1.39901 * 109.47067 * 60.00222 * 24 2 1 27 27 F 1.39903 * 109.47013 * 180.02562 * 24 2 1 28 28 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47015 * 300.00685 * 1 2 3 30 30 H 1.09008 * 109.46784 * 60.00098 * 1 2 3 31 31 H 0.97003 * 119.99086 * 0.02562 * 6 4 2 32 32 H 1.09000 * 109.45635 * 205.58069 * 8 7 6 33 33 H 1.08995 * 109.49698 * 298.56370 * 9 8 7 34 34 H 1.08994 * 109.50201 * 58.66584 * 9 8 7 35 35 H 1.08996 * 109.59940 * 294.86772 * 10 9 8 36 36 H 1.09001 * 109.58118 * 174.43482 * 10 9 8 37 37 H 0.96999 * 120.00028 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.58268 * 293.82301 * 20 11 10 39 39 H 1.08994 * 109.58741 * 173.39516 * 20 11 10 40 40 H 1.09006 * 109.49524 * 301.33357 * 21 8 7 41 41 H 1.08997 * 109.50434 * 61.40151 * 21 8 7 42 42 H 1.09004 * 117.49954 * 359.97438 * 22 7 6 43 43 H 1.09005 * 117.50292 * 145.02004 * 22 7 6 44 44 H 1.09005 * 117.50114 * 214.97804 * 23 7 6 45 45 H 1.09001 * 117.50248 * 359.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4547 7 6 2.1955 -0.9400 3.6508 8 6 1.7642 -0.3310 4.9866 9 6 0.3906 -0.8810 5.3777 10 6 -0.0223 -0.2961 6.7321 11 7 0.0402 1.1696 6.6528 12 6 -1.0435 1.9338 6.9945 13 1 -1.1827 2.9054 6.5439 14 6 -1.9631 1.4596 7.9197 15 7 -1.6415 0.4613 8.7150 16 14 -3.6571 2.2382 8.0364 17 1 -4.3559 2.1007 6.7333 18 1 -4.4438 1.5556 9.0949 19 1 -3.5181 3.6776 8.3740 20 6 1.2877 1.8000 6.1995 21 6 1.6860 1.1913 4.8513 22 6 3.5844 -1.5777 3.5806 23 6 2.3349 -2.4620 3.5808 24 6 2.0401 -0.7213 -1.2492 25 9 1.5737 -2.0403 -1.2491 26 9 1.5738 -0.0618 -2.3915 27 9 3.4391 -0.7218 -1.2488 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.1488 0.5387 2.5435 32 1 2.4917 -0.5905 5.7557 33 1 -0.3424 -0.6005 4.6214 34 1 0.4410 -1.9673 5.4510 35 1 0.6589 -0.6496 7.5060 36 1 -1.0401 -0.6061 6.9689 37 1 -2.2840 0.1301 9.3619 38 1 2.0757 1.6173 6.9301 39 1 1.1343 2.8730 6.0850 40 1 2.6587 1.5801 4.5498 41 1 0.9411 1.4521 4.0996 42 1 4.1344 -1.4841 2.6441 43 1 4.1911 -1.5636 4.4860 44 1 2.1201 -3.0293 4.4865 45 1 2.0626 -2.9499 2.6449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725793174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:37 Heat of formation + Delta-G solvation = -163.050608 kcal Electronic energy + Delta-G solvation = -30637.837363 eV Core-core repulsion = 26047.882394 eV Total energy + Delta-G solvation = -4589.954968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.12445 -48.62749 -48.57607 -41.74774 -39.53009 -37.54086 -35.47986 -34.56181 -33.43478 -32.06761 -31.38749 -27.44987 -27.39084 -25.22604 -24.18052 -24.06321 -22.93328 -21.93298 -21.24738 -20.26198 -19.84255 -19.47729 -18.83960 -18.50815 -17.89244 -16.88645 -16.52100 -16.44239 -15.76935 -15.60489 -15.36516 -15.27465 -15.14098 -15.00621 -14.96778 -14.81405 -14.74856 -14.70612 -14.54838 -14.32118 -14.11586 -13.90482 -13.47241 -13.07994 -13.01601 -12.93629 -12.68069 -12.51534 -12.44652 -12.31681 -12.11794 -11.92622 -11.91388 -11.69810 -11.52691 -11.12509 -10.97388 -10.72142 -10.48943 -9.62837 -8.63812 -7.83470 -5.27901 1.33320 1.47904 1.50031 1.51802 1.58283 1.96201 2.54727 2.64736 2.92199 3.01862 3.03900 3.30912 3.53654 3.60103 3.75536 3.80614 3.88006 3.97914 4.03042 4.19465 4.36784 4.49475 4.58680 4.60271 4.65226 4.67032 4.78243 4.83531 4.96632 5.04528 5.07604 5.10058 5.20735 5.27422 5.28789 5.35228 5.40646 5.50363 5.60769 5.70195 5.81536 6.37275 6.43352 7.03104 7.19502 7.91962 8.42718 9.22556 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.003046 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.782495 B = 9189.200496 C =10006.404737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.153 4.153 3 H 0.173 0.827 4 C 0.518 3.482 5 O -0.551 6.551 6 N -0.672 5.672 7 C 0.114 3.886 8 C -0.032 4.032 9 C -0.116 4.116 10 C 0.177 3.823 11 N -0.609 5.609 12 C -0.260 4.260 13 H 0.070 0.930 14 C -0.051 4.051 15 N -0.936 5.936 16 Si 0.963 3.037 17 H -0.276 1.276 18 H -0.299 1.299 19 H -0.276 1.276 20 C 0.139 3.861 21 C -0.113 4.113 22 C -0.170 4.170 23 C -0.179 4.179 24 C 0.469 3.531 25 F -0.186 7.186 26 F -0.176 7.176 27 F -0.186 7.186 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.418 0.582 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.061 0.939 35 H -0.008 1.008 36 H 0.051 0.949 37 H 0.248 0.752 38 H 0.011 0.989 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.098 0.902 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 0.129 -18.898 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.175 4.175 3 H 0.190 0.810 4 C 0.304 3.696 5 O -0.429 6.429 6 N -0.323 5.323 7 C 0.027 3.973 8 C -0.051 4.051 9 C -0.155 4.155 10 C 0.051 3.949 11 N -0.333 5.333 12 C -0.390 4.390 13 H 0.088 0.912 14 C -0.246 4.246 15 N -0.583 5.583 16 Si 0.791 3.209 17 H -0.202 1.202 18 H -0.226 1.226 19 H -0.202 1.202 20 C 0.014 3.986 21 C -0.152 4.152 22 C -0.209 4.209 23 C -0.217 4.217 24 C 0.415 3.585 25 F -0.167 7.167 26 F -0.158 7.158 27 F -0.168 7.168 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.257 0.743 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.011 0.989 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.029 0.971 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.505 -0.614 -18.878 20.324 hybrid contribution -1.025 0.225 0.429 1.134 sum 6.479 -0.389 -18.449 19.558 Atomic orbital electron populations 1.21935 0.87652 1.04612 1.06676 1.22700 1.02464 1.03831 0.88543 0.80980 1.20179 0.80202 0.84419 0.84848 1.90770 1.38517 1.26798 1.86859 1.45175 1.52279 1.31610 1.03247 1.20712 0.98904 0.92085 0.85636 1.20629 0.96947 0.95633 0.91931 1.22001 0.96188 0.99157 0.98173 1.20574 0.99062 0.82962 0.92284 1.44326 1.10079 1.01691 1.77163 1.19508 1.00660 1.01612 1.17227 0.91226 1.25752 1.03118 0.99920 0.95834 1.70183 1.34928 1.30827 1.22331 0.85409 0.80454 0.77972 0.77024 1.20239 1.22552 1.20203 1.21066 0.87348 0.96415 0.93759 1.21893 1.01452 0.93892 0.97999 1.23424 0.90898 1.03046 1.03484 1.23314 1.02337 0.92938 1.03126 1.20074 0.75375 0.77559 0.85530 1.93182 1.88368 1.38423 1.96776 1.93192 1.88405 1.80574 1.53594 1.93193 1.30412 1.96382 1.96776 0.91740 0.88100 0.88058 0.74278 0.90448 0.92730 0.92067 0.98946 0.93073 0.94298 0.97127 0.92431 0.89959 0.91437 0.88644 0.87758 0.88335 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.85 71.98 0.64 -1.08 16 2 C -0.15 -2.24 2.71 -11.54 -0.03 -2.27 16 3 H 0.17 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.52 11.05 6.63 87.66 0.58 11.63 16 5 O -0.55 -15.70 10.31 -3.05 -0.03 -15.73 16 6 N -0.67 -13.55 5.28 -422.93 -2.23 -15.78 16 7 C 0.11 2.77 2.48 3.60 0.01 2.78 16 8 C -0.03 -0.89 2.28 -10.76 -0.02 -0.92 16 9 C -0.12 -3.92 5.22 30.67 0.16 -3.76 16 10 C 0.18 8.04 5.31 86.36 0.46 8.50 16 11 N -0.61 -28.36 2.99 -699.09 -2.09 -30.46 16 12 C -0.26 -13.50 9.59 84.03 0.81 -12.70 16 13 H 0.07 3.48 7.89 -2.91 -0.02 3.45 16 14 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 15 N -0.94 -54.15 11.19 21.65 0.24 -53.91 16 16 Si 0.96 43.24 29.59 68.60 2.03 45.27 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 C 0.14 5.13 6.52 86.36 0.56 5.69 16 21 C -0.11 -3.03 4.83 30.67 0.15 -2.89 16 22 C -0.17 -4.20 9.37 30.62 0.29 -3.92 16 23 C -0.18 -4.68 8.91 30.62 0.27 -4.40 16 24 C 0.47 9.25 2.43 71.98 0.17 9.42 16 25 F -0.19 -4.52 15.88 44.97 0.71 -3.81 16 26 F -0.18 -3.09 16.80 44.97 0.76 -2.33 16 27 F -0.19 -4.39 16.40 44.97 0.74 -3.65 16 28 H 0.06 0.93 7.80 -2.39 -0.02 0.91 16 29 H 0.10 0.91 7.56 -2.39 -0.02 0.89 16 30 H 0.10 0.82 7.80 -2.38 -0.02 0.80 16 31 H 0.42 6.80 6.08 -92.71 -0.56 6.24 16 32 H 0.08 2.24 7.90 -2.39 -0.02 2.22 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.94 7.25 -2.39 -0.02 1.93 16 35 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H 0.05 2.69 6.04 -2.39 -0.01 2.68 16 37 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.06 2.06 7.93 -2.39 -0.02 2.04 16 40 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.07 1.66 6.50 -2.39 -0.02 1.64 16 42 H 0.10 2.60 6.38 -2.38 -0.02 2.59 16 43 H 0.10 2.33 8.05 -2.38 -0.02 2.31 16 44 H 0.10 2.48 7.60 -2.38 -0.02 2.47 16 45 H 0.09 2.71 6.38 -2.39 -0.02 2.69 16 Total: -1.00 -66.15 359.94 5.04 -61.11 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.46 Total: 15.54 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 4.46 Total: 3.75 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -4.08 Total: -100.14 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.03 Total: -15.73 kcal Atomic # 9 Polarization: -12.00 SS G_CDS: 2.21 Total: -9.79 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -66.15 5.04 -61.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725793174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.939 kcal (2) G-P(sol) polarization free energy of solvation -66.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds