Wall clock time and date at job start Tue Mar 31 2020 17:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47133 * 2 1 4 4 C 1.52997 * 109.47162 * 240.00195 * 2 1 3 5 5 N 1.46497 * 109.47518 * 159.59426 * 4 2 1 6 6 C 1.34768 * 120.00502 * 173.11319 * 5 4 2 7 7 O 1.21279 * 119.99873 * 0.78103 * 6 5 4 8 8 C 1.50700 * 120.00292 * 180.77625 * 6 5 4 9 9 H 1.09000 * 109.58101 * 300.96353 * 8 6 5 10 10 O 1.43090 * 109.47334 * 180.76062 * 8 6 5 11 11 C 1.43081 * 113.64806 * 297.98525 * 10 8 6 12 12 C 1.53140 * 109.14855 * 302.08462 * 11 10 8 13 13 O 1.43078 * 109.15561 * 55.31307 * 12 11 10 14 14 C 1.43081 * 113.58888 * 302.05029 * 13 12 11 15 15 H 1.09000 * 109.52143 * 297.98023 * 14 13 12 16 16 C 1.50700 * 109.52076 * 177.85558 * 14 13 12 17 17 C 1.38239 * 120.00180 * 5.07476 * 16 14 13 18 18 C 1.38233 * 119.99874 * 180.34915 * 17 16 14 19 19 C 1.38238 * 119.99873 * 359.90996 * 18 17 16 20 20 C 1.38233 * 120.00346 * 0.04681 * 19 18 17 21 21 C 1.38236 * 119.99868 * 0.02562 * 20 19 18 22 22 N 1.46504 * 109.47035 * 119.99887 * 2 1 3 23 23 C 1.36933 * 119.99995 * 296.13367 * 22 2 1 24 24 H 1.08002 * 120.00229 * 335.48593 * 23 22 2 25 25 C 1.38811 * 119.99668 * 155.49211 * 23 22 2 26 26 N 1.31623 * 119.99887 * 166.05623 * 25 23 22 27 27 Si 1.86795 * 120.00242 * 346.04752 * 25 23 22 28 28 H 1.48502 * 109.47053 * 93.10047 * 27 25 23 29 29 H 1.48496 * 109.47653 * 213.10379 * 27 25 23 30 30 H 1.48498 * 109.47390 * 333.10417 * 27 25 23 31 31 H 1.08992 * 109.47218 * 60.00302 * 1 2 3 32 32 H 1.09007 * 109.46453 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46966 * 299.99650 * 1 2 3 34 34 H 1.09005 * 109.47228 * 39.58837 * 4 2 1 35 35 H 1.09001 * 109.47077 * 279.59040 * 4 2 1 36 36 H 0.97003 * 119.99440 * 353.11066 * 5 4 2 37 37 H 1.08995 * 109.52447 * 182.18456 * 11 10 8 38 38 H 1.09002 * 109.52370 * 61.98523 * 11 10 8 39 39 H 1.09004 * 109.52478 * 295.40884 * 12 11 10 40 40 H 1.09007 * 109.57648 * 175.24939 * 12 11 10 41 41 H 1.07999 * 119.99690 * 0.28363 * 17 16 14 42 42 H 1.07994 * 119.99965 * 179.97438 * 18 17 16 43 43 H 1.08003 * 119.99857 * 180.02562 * 19 18 17 44 44 H 1.08000 * 120.00213 * 180.02562 * 20 19 18 45 45 H 1.07998 * 119.99750 * 179.97438 * 21 20 19 46 46 H 0.97004 * 119.99500 * 116.13972 * 22 2 1 47 47 H 0.96998 * 120.00164 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.4233 -0.3186 -1.5151 6 6 4.1284 -0.9308 -2.4868 7 8 3.6133 -1.8053 -3.1507 8 6 5.5570 -0.5287 -2.7486 9 1 5.5974 0.5300 -3.0050 10 8 6.0802 -1.3045 -3.8311 11 6 6.1147 -2.7101 -3.5658 12 6 6.9571 -2.9641 -2.3124 13 8 6.4330 -2.1896 -1.2295 14 6 6.3985 -0.7841 -1.4950 15 1 7.4128 -0.4189 -1.6563 16 6 5.7851 -0.0649 -0.3213 17 6 5.4580 -0.7655 0.8246 18 6 4.8886 -0.1070 1.8984 19 6 4.6481 1.2524 1.8270 20 6 4.9759 1.9532 0.6815 21 6 5.5439 1.2944 -0.3929 22 7 2.0184 -0.6906 1.1962 23 6 1.7541 -0.1784 2.4383 24 1 1.5560 0.8767 2.5564 25 6 1.7410 -1.0153 3.5457 26 7 1.7624 -0.5030 4.7580 27 14 1.6927 -2.8683 3.3155 28 1 3.0778 -3.4039 3.3197 29 1 0.9202 -3.4850 4.4238 30 1 1.0418 -3.1895 2.0200 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3632 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.4145 -0.4573 -2.1020 35 1 1.9998 -1.7986 -1.0887 36 1 3.8317 0.3886 -0.9917 37 1 6.5585 -3.2303 -4.4146 38 1 5.1005 -3.0750 -3.4032 39 1 7.9901 -2.6724 -2.5024 40 1 6.9190 -4.0227 -2.0551 41 1 5.6463 -1.8274 0.8805 42 1 4.6327 -0.6544 2.7935 43 1 4.2036 1.7670 2.6662 44 1 4.7884 3.0153 0.6259 45 1 5.7997 1.8419 -1.2881 46 1 2.5290 -1.5107 1.1083 47 1 1.7528 -1.0878 5.5318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731598118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:20 Heat of formation + Delta-G solvation = -66.374608 kcal Electronic energy + Delta-G solvation = -31803.134573 eV Core-core repulsion = 27759.228531 eV Total energy + Delta-G solvation = -4043.906042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21519 -38.77219 -38.50660 -36.40124 -35.95446 -34.06325 -32.79697 -31.72065 -30.55343 -29.79756 -29.28446 -28.02189 -25.93523 -24.79531 -23.41347 -22.49404 -21.99441 -21.10071 -20.44938 -19.54378 -17.72950 -17.48418 -17.00592 -16.88397 -16.36336 -16.14201 -15.52448 -15.17463 -15.07452 -14.54686 -14.39561 -14.14222 -14.01921 -13.96225 -13.64128 -13.01537 -12.98345 -12.78987 -12.68575 -12.60807 -12.29019 -12.18803 -11.86661 -11.70825 -11.42285 -11.14379 -11.07721 -10.90687 -10.72431 -10.68359 -10.48171 -10.45616 -10.19347 -9.82019 -9.63280 -9.04842 -8.81187 -8.68029 -8.46827 -8.25936 -7.14271 -5.88277 -3.24958 1.64102 1.78169 2.69726 3.30918 3.34542 3.46877 3.49283 3.51804 3.57019 4.12009 4.44113 4.57393 4.63746 4.76163 4.86954 4.98264 5.09512 5.17365 5.24597 5.27766 5.29508 5.34027 5.39481 5.45302 5.59459 5.75480 5.86111 5.87416 5.89709 5.92515 6.05003 6.20652 6.25214 6.32427 6.43519 6.45416 6.68417 6.69112 6.72762 6.81704 6.83075 7.04882 7.07411 7.18042 7.40015 7.78103 8.07186 8.34003 8.41422 9.18904 9.87119 10.15040 11.28776 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013335 B = 0.005118 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.237631 B = 5469.453200 C = 5708.097773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.043 0.957 4 C 0.109 3.891 5 N -0.711 5.711 6 C 0.496 3.504 7 O -0.542 6.542 8 C 0.046 3.954 9 H 0.134 0.866 10 O -0.352 6.352 11 C 0.006 3.994 12 C 0.025 3.975 13 O -0.363 6.363 14 C 0.115 3.885 15 H 0.087 0.913 16 C -0.106 4.106 17 C -0.093 4.093 18 C -0.061 4.061 19 C -0.075 4.075 20 C -0.123 4.123 21 C -0.148 4.148 22 N -0.734 5.734 23 C -0.233 4.233 24 H 0.082 0.918 25 C 0.020 3.980 26 N -0.921 5.921 27 Si 0.861 3.139 28 H -0.287 1.287 29 H -0.296 1.296 30 H -0.272 1.272 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.409 0.591 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.359 0.641 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.593 2.163 -13.161 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.061 0.939 4 C -0.015 4.015 5 N -0.369 5.369 6 C 0.281 3.719 7 O -0.421 6.421 8 C -0.016 4.016 9 H 0.151 0.849 10 O -0.269 6.269 11 C -0.071 4.071 12 C -0.052 4.052 13 O -0.282 6.282 14 C 0.056 3.944 15 H 0.104 0.896 16 C -0.106 4.106 17 C -0.111 4.111 18 C -0.079 4.079 19 C -0.093 4.093 20 C -0.141 4.141 21 C -0.167 4.167 22 N -0.378 5.378 23 C -0.363 4.363 24 H 0.100 0.900 25 C -0.177 4.177 26 N -0.566 5.566 27 Si 0.691 3.309 28 H -0.214 1.214 29 H -0.223 1.223 30 H -0.197 1.197 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.252 0.748 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.124 0.876 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.191 0.809 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.105 1.691 -13.444 16.903 hybrid contribution 0.102 -1.220 0.227 1.245 sum 10.207 0.472 -13.217 16.706 Atomic orbital electron populations 1.22213 0.97384 1.01380 1.00729 1.20510 0.92723 0.95393 0.85619 0.93920 1.21760 0.81531 1.00301 0.97858 1.46765 1.14473 1.39702 1.35979 1.20948 0.88115 0.82509 0.80361 1.90598 1.71101 1.31473 1.48923 1.22868 0.91143 0.98219 0.89381 0.84876 1.88128 1.82935 1.18198 1.37662 1.23594 1.02978 0.82350 0.98160 1.23301 0.96941 0.97164 0.87777 1.88150 1.84990 1.16387 1.38662 1.21276 0.98461 0.82824 0.91790 0.89584 1.19270 1.02784 0.93642 0.94905 1.20915 0.97793 1.00053 0.92376 1.21245 0.93606 0.94627 0.98472 1.21217 0.95801 0.94690 0.97642 1.21046 0.99885 0.99695 0.93521 1.20676 1.03245 0.93138 0.99626 1.42710 1.63677 1.29633 1.01750 1.18773 1.41797 0.93741 0.82005 0.89992 1.25017 1.00822 0.96653 0.95238 1.69745 1.55555 1.34190 0.97152 0.86843 0.77921 0.88638 0.77541 1.21432 1.22297 1.19724 0.94342 0.93274 0.91496 0.91789 0.91411 0.74827 0.87909 0.88743 0.92293 0.87631 0.85953 0.85291 0.85499 0.86250 0.86551 0.80865 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.12 37.16 0.34 -2.39 16 2 C 0.17 2.97 3.11 -67.93 -0.21 2.76 16 3 H 0.04 0.77 7.97 -51.93 -0.41 0.36 16 4 C 0.11 1.85 5.27 -4.04 -0.02 1.83 16 5 N -0.71 -11.21 4.78 -60.30 -0.29 -11.50 16 6 C 0.50 8.06 6.60 -10.99 -0.07 7.99 16 7 O -0.54 -10.37 13.99 -14.33 -0.20 -10.57 16 8 C 0.05 0.60 3.12 -27.81 -0.09 0.52 16 9 H 0.13 1.42 7.33 -51.93 -0.38 1.04 16 10 O -0.35 -4.86 10.48 -62.54 -0.66 -5.51 16 11 C 0.01 0.07 6.59 37.23 0.25 0.31 16 12 C 0.03 0.28 7.05 37.23 0.26 0.54 16 13 O -0.36 -5.13 8.73 -48.80 -0.43 -5.56 16 14 C 0.11 1.47 2.90 -27.81 -0.08 1.39 16 15 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 16 C -0.11 -1.45 3.26 -104.62 -0.34 -1.79 16 17 C -0.09 -1.49 9.25 -39.58 -0.37 -1.86 16 18 C -0.06 -1.06 8.01 -39.58 -0.32 -1.38 16 19 C -0.08 -1.20 9.55 -39.58 -0.38 -1.58 16 20 C -0.12 -1.62 9.82 -39.58 -0.39 -2.01 16 21 C -0.15 -1.81 7.08 -39.58 -0.28 -2.09 16 22 N -0.73 -15.26 3.72 -53.42 -0.20 -15.46 16 23 C -0.23 -5.63 8.28 -15.06 -0.12 -5.76 16 24 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 25 C 0.02 0.53 5.50 -17.43 -0.10 0.43 16 26 N -0.92 -26.21 13.97 55.49 0.78 -25.44 16 27 Si 0.86 21.04 27.67 -169.99 -4.70 16.34 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 30 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 31 H 0.04 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.27 7.75 -51.93 -0.40 0.87 16 34 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 35 H 0.07 1.27 7.96 -51.93 -0.41 0.86 16 36 H 0.41 6.06 3.72 -40.82 -0.15 5.90 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.44 5.58 -51.93 -0.29 1.15 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.12 2.06 7.02 -52.49 -0.37 1.69 16 42 H 0.13 2.55 8.06 -52.49 -0.42 2.12 16 43 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.12 1.10 7.36 -52.49 -0.39 0.71 16 46 H 0.36 7.81 6.61 -40.82 -0.27 7.54 16 47 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -29.75 367.82 -8.92 -38.67 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -6.85 Total: 16.56 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.92 Total: -3.08 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.29 Total: -52.40 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -1.28 Total: -21.64 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.70 Total: 16.34 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.75 -8.92 -38.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731598118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.706 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds