Wall clock time and date at job start Tue Mar 31 2020 17:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47133 * 2 1 4 4 C 1.52997 * 109.47162 * 240.00195 * 2 1 3 5 5 N 1.46497 * 109.47518 * 159.59426 * 4 2 1 6 6 C 1.34768 * 120.00502 * 173.11319 * 5 4 2 7 7 O 1.21279 * 119.99873 * 0.78103 * 6 5 4 8 8 C 1.50700 * 120.00292 * 180.77625 * 6 5 4 9 9 H 1.09000 * 109.58101 * 300.96353 * 8 6 5 10 10 O 1.43090 * 109.47334 * 180.76062 * 8 6 5 11 11 C 1.43081 * 113.64806 * 297.98525 * 10 8 6 12 12 C 1.53140 * 109.14855 * 302.08462 * 11 10 8 13 13 O 1.43078 * 109.15561 * 55.31307 * 12 11 10 14 14 C 1.43081 * 113.58888 * 302.05029 * 13 12 11 15 15 H 1.09000 * 109.52143 * 297.98023 * 14 13 12 16 16 C 1.50700 * 109.52076 * 177.85558 * 14 13 12 17 17 C 1.38239 * 120.00180 * 5.07476 * 16 14 13 18 18 C 1.38233 * 119.99874 * 180.34915 * 17 16 14 19 19 C 1.38238 * 119.99873 * 359.90996 * 18 17 16 20 20 C 1.38233 * 120.00346 * 0.04681 * 19 18 17 21 21 C 1.38236 * 119.99868 * 0.02562 * 20 19 18 22 22 N 1.46504 * 109.47035 * 119.99887 * 2 1 3 23 23 C 1.36933 * 119.99995 * 296.13367 * 22 2 1 24 24 H 1.08002 * 120.00229 * 335.48593 * 23 22 2 25 25 C 1.38811 * 119.99668 * 155.49211 * 23 22 2 26 26 N 1.31623 * 119.99887 * 166.05623 * 25 23 22 27 27 Si 1.86795 * 120.00242 * 346.04752 * 25 23 22 28 28 H 1.48502 * 109.47053 * 93.10047 * 27 25 23 29 29 H 1.48496 * 109.47653 * 213.10379 * 27 25 23 30 30 H 1.48498 * 109.47390 * 333.10417 * 27 25 23 31 31 H 1.08992 * 109.47218 * 60.00302 * 1 2 3 32 32 H 1.09007 * 109.46453 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46966 * 299.99650 * 1 2 3 34 34 H 1.09005 * 109.47228 * 39.58837 * 4 2 1 35 35 H 1.09001 * 109.47077 * 279.59040 * 4 2 1 36 36 H 0.97003 * 119.99440 * 353.11066 * 5 4 2 37 37 H 1.08995 * 109.52447 * 182.18456 * 11 10 8 38 38 H 1.09002 * 109.52370 * 61.98523 * 11 10 8 39 39 H 1.09004 * 109.52478 * 295.40884 * 12 11 10 40 40 H 1.09007 * 109.57648 * 175.24939 * 12 11 10 41 41 H 1.07999 * 119.99690 * 0.28363 * 17 16 14 42 42 H 1.07994 * 119.99965 * 179.97438 * 18 17 16 43 43 H 1.08003 * 119.99857 * 180.02562 * 19 18 17 44 44 H 1.08000 * 120.00213 * 180.02562 * 20 19 18 45 45 H 1.07998 * 119.99750 * 179.97438 * 21 20 19 46 46 H 0.97004 * 119.99500 * 116.13972 * 22 2 1 47 47 H 0.96998 * 120.00164 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.4233 -0.3186 -1.5151 6 6 4.1284 -0.9308 -2.4868 7 8 3.6133 -1.8053 -3.1507 8 6 5.5570 -0.5287 -2.7486 9 1 5.5974 0.5300 -3.0050 10 8 6.0802 -1.3045 -3.8311 11 6 6.1147 -2.7101 -3.5658 12 6 6.9571 -2.9641 -2.3124 13 8 6.4330 -2.1896 -1.2295 14 6 6.3985 -0.7841 -1.4950 15 1 7.4128 -0.4189 -1.6563 16 6 5.7851 -0.0649 -0.3213 17 6 5.4580 -0.7655 0.8246 18 6 4.8886 -0.1070 1.8984 19 6 4.6481 1.2524 1.8270 20 6 4.9759 1.9532 0.6815 21 6 5.5439 1.2944 -0.3929 22 7 2.0184 -0.6906 1.1962 23 6 1.7541 -0.1784 2.4383 24 1 1.5560 0.8767 2.5564 25 6 1.7410 -1.0153 3.5457 26 7 1.7624 -0.5030 4.7580 27 14 1.6927 -2.8683 3.3155 28 1 3.0778 -3.4039 3.3197 29 1 0.9202 -3.4850 4.4238 30 1 1.0418 -3.1895 2.0200 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3632 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.4145 -0.4573 -2.1020 35 1 1.9998 -1.7986 -1.0887 36 1 3.8317 0.3886 -0.9917 37 1 6.5585 -3.2303 -4.4146 38 1 5.1005 -3.0750 -3.4032 39 1 7.9901 -2.6724 -2.5024 40 1 6.9190 -4.0227 -2.0551 41 1 5.6463 -1.8274 0.8805 42 1 4.6327 -0.6544 2.7935 43 1 4.2036 1.7670 2.6662 44 1 4.7884 3.0153 0.6259 45 1 5.7997 1.8419 -1.2881 46 1 2.5290 -1.5107 1.1083 47 1 1.7528 -1.0878 5.5318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731598118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:19 Heat of formation + Delta-G solvation = -85.323926 kcal Electronic energy + Delta-G solvation = -31803.956277 eV Core-core repulsion = 27759.228531 eV Total energy + Delta-G solvation = -4044.727746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31155 -39.91421 -39.72267 -37.86714 -37.06131 -35.49302 -34.18685 -33.35026 -31.71539 -31.08204 -30.76010 -29.12496 -27.24090 -25.94498 -25.14646 -23.65826 -23.09469 -22.27025 -21.89262 -20.85444 -19.61117 -18.52164 -18.15893 -18.00869 -17.47601 -17.26342 -16.76892 -16.58460 -16.28989 -16.14258 -15.75942 -15.50040 -15.21958 -15.15286 -14.71331 -14.67755 -14.48127 -14.11164 -13.88527 -13.84608 -13.56761 -13.46313 -13.23465 -13.06119 -12.93031 -12.81961 -12.48352 -12.33681 -12.17560 -11.98854 -11.85738 -11.76497 -11.70270 -11.50881 -10.89931 -10.74250 -10.24754 -9.92974 -9.68670 -9.44710 -9.01425 -7.97418 -5.28283 0.47913 0.61871 1.33743 1.42927 1.48159 1.48885 2.15318 2.53157 2.55549 2.56041 2.95120 3.37837 3.42249 3.61862 3.64113 3.66313 3.91989 3.95308 4.06016 4.19342 4.22609 4.25162 4.37030 4.38650 4.42140 4.49075 4.51635 4.70651 4.75246 4.75841 4.81856 4.86954 4.93163 5.02135 5.14217 5.26924 5.28392 5.39593 5.56842 5.60537 5.66780 5.74918 5.94241 6.02417 6.05984 6.19068 6.28890 6.53861 7.17787 7.21125 7.92419 8.17643 9.23370 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013335 B = 0.005118 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.237631 B = 5469.453200 C = 5708.097773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.168 3.832 3 H 0.052 0.948 4 C 0.117 3.883 5 N -0.707 5.707 6 C 0.489 3.511 7 O -0.575 6.575 8 C 0.050 3.950 9 H 0.169 0.831 10 O -0.357 6.357 11 C 0.004 3.996 12 C 0.024 3.976 13 O -0.391 6.391 14 C 0.116 3.884 15 H 0.117 0.883 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.080 4.080 19 C -0.092 4.092 20 C -0.113 4.113 21 C -0.134 4.134 22 N -0.732 5.732 23 C -0.186 4.186 24 H 0.061 0.939 25 C -0.030 4.030 26 N -0.964 5.964 27 Si 0.908 3.092 28 H -0.290 1.290 29 H -0.310 1.310 30 H -0.268 1.268 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.413 0.587 37 H 0.130 0.870 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.356 0.644 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.093 3.539 -16.654 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.060 3.940 3 H 0.070 0.930 4 C -0.007 4.007 5 N -0.366 5.366 6 C 0.276 3.724 7 O -0.456 6.456 8 C -0.012 4.012 9 H 0.186 0.814 10 O -0.274 6.274 11 C -0.072 4.072 12 C -0.052 4.052 13 O -0.310 6.310 14 C 0.058 3.942 15 H 0.134 0.866 16 C -0.101 4.101 17 C -0.121 4.121 18 C -0.098 4.098 19 C -0.111 4.111 20 C -0.130 4.130 21 C -0.152 4.152 22 N -0.375 5.375 23 C -0.317 4.317 24 H 0.079 0.921 25 C -0.224 4.224 26 N -0.614 5.614 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.238 1.238 30 H -0.193 1.193 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.257 0.743 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.107 0.893 43 H 0.124 0.876 44 H 0.167 0.833 45 H 0.179 0.821 46 H 0.187 0.813 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.611 3.070 -16.984 20.801 hybrid contribution -0.318 -1.601 1.184 2.017 sum 11.293 1.469 -15.799 19.476 Atomic orbital electron populations 1.22141 0.96489 1.01078 1.01499 1.20615 0.93316 0.95398 0.84671 0.92982 1.21579 0.82724 0.98765 0.97630 1.46744 1.14019 1.39757 1.36047 1.21628 0.89382 0.81792 0.79631 1.90598 1.72108 1.32784 1.50070 1.23046 0.88612 0.99891 0.89629 0.81404 1.88125 1.82618 1.18713 1.37940 1.23651 1.01649 0.81982 0.99930 1.23476 0.97744 0.97608 0.86420 1.88133 1.85504 1.17283 1.40099 1.21410 0.99643 0.82429 0.90715 0.86595 1.19464 1.01874 0.94434 0.94313 1.20741 0.98752 0.99414 0.93176 1.20908 0.95894 0.95227 0.97816 1.21107 0.97157 0.94195 0.98601 1.21323 0.98466 1.00989 0.92269 1.21115 1.01073 0.92436 1.00589 1.42696 1.63704 1.29352 1.01725 1.18576 1.37687 0.92444 0.83005 0.92086 1.25368 1.02755 0.98971 0.95266 1.69849 1.59070 1.34742 0.97714 0.86076 0.77393 0.85895 0.76804 1.21677 1.23780 1.19294 0.90883 0.94123 0.93408 0.90085 0.93575 0.74318 0.85215 0.92002 0.89815 0.86594 0.87631 0.89297 0.87649 0.83263 0.82057 0.81271 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.12 71.98 0.66 -4.37 16 2 C 0.17 5.75 3.11 44.99 0.14 5.89 16 3 H 0.05 1.75 7.97 -2.39 -0.02 1.73 16 4 C 0.12 3.75 5.27 86.38 0.46 4.21 16 5 N -0.71 -20.57 4.78 -463.08 -2.21 -22.78 16 6 C 0.49 14.68 6.60 87.66 0.58 15.26 16 7 O -0.57 -21.20 13.99 15.99 0.22 -20.98 16 8 C 0.05 1.12 3.12 29.89 0.09 1.21 16 9 H 0.17 2.55 7.33 -2.39 -0.02 2.54 16 10 O -0.36 -8.54 10.48 -122.87 -1.29 -9.83 16 11 C 0.00 0.09 6.59 72.03 0.47 0.57 16 12 C 0.02 0.47 7.05 72.03 0.51 0.97 16 13 O -0.39 -10.25 8.73 -136.01 -1.19 -11.44 16 14 C 0.12 2.56 2.90 29.89 0.09 2.64 16 15 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 16 C -0.10 -2.49 3.26 -19.86 -0.06 -2.55 16 17 C -0.10 -3.27 9.25 22.27 0.21 -3.07 16 18 C -0.08 -2.87 8.01 22.27 0.18 -2.69 16 19 C -0.09 -2.96 9.55 22.27 0.21 -2.75 16 20 C -0.11 -2.63 9.82 22.27 0.22 -2.41 16 21 C -0.13 -2.70 7.08 22.27 0.16 -2.54 16 22 N -0.73 -30.53 3.72 -322.93 -1.20 -31.73 16 23 C -0.19 -9.19 8.28 84.03 0.70 -8.49 16 24 H 0.06 3.31 8.06 -2.91 -0.02 3.29 16 25 C -0.03 -1.66 5.50 84.86 0.47 -1.19 16 26 N -0.96 -57.34 13.97 21.65 0.30 -57.04 16 27 Si 0.91 45.09 27.67 68.60 1.90 46.99 16 28 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 29 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 30 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 31 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 32 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.05 1.76 7.75 -2.39 -0.02 1.74 16 34 H 0.08 2.36 7.97 -2.38 -0.02 2.34 16 35 H 0.05 1.70 7.96 -2.39 -0.02 1.68 16 36 H 0.41 10.98 3.72 -92.71 -0.34 10.63 16 37 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.06 1.82 5.58 -2.39 -0.01 1.81 16 39 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.11 3.68 7.02 -2.91 -0.02 3.66 16 42 H 0.09 3.84 8.06 -2.91 -0.02 3.82 16 43 H 0.11 3.78 8.06 -2.91 -0.02 3.75 16 44 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 45 H 0.16 1.90 7.36 -2.91 -0.02 1.88 16 46 H 0.36 15.63 6.61 -92.71 -0.61 15.02 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -67.96 367.82 1.63 -66.33 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: 0.03 Total: 39.80 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 5.06 Total: 0.69 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -3.11 Total: -111.55 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -2.25 Total: -42.24 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Total: -67.96 1.63 -66.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731598118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.999 kcal (2) G-P(sol) polarization free energy of solvation -67.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds