Wall clock time and date at job start Tue Mar 31 2020 17:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 N 1.46492 * 109.47631 * 174.99916 * 4 2 1 6 6 C 1.34775 * 120.00395 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00014 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00117 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.52302 * 304.86455 * 8 6 5 10 10 O 1.43075 * 109.52470 * 184.67110 * 8 6 5 11 11 C 1.43080 * 113.59448 * 298.05089 * 10 8 6 12 12 C 1.53147 * 109.14742 * 302.04842 * 11 10 8 13 13 O 1.43074 * 109.15304 * 55.30703 * 12 11 10 14 14 C 1.43070 * 113.59392 * 302.05235 * 13 12 11 15 15 H 1.09001 * 109.57849 * 298.01067 * 14 13 12 16 16 C 1.50699 * 109.52302 * 177.85502 * 14 13 12 17 17 C 1.38236 * 119.99857 * 325.04986 * 16 14 13 18 18 C 1.38239 * 120.00177 * 179.79317 * 17 16 14 19 19 C 1.38236 * 119.99621 * 0.45825 * 18 17 16 20 20 C 1.38241 * 119.99994 * 359.77305 * 19 18 17 21 21 C 1.38223 * 119.99860 * 0.02562 * 20 19 18 22 22 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 23 23 C 1.36939 * 119.99792 * 84.99599 * 22 2 1 24 24 H 1.08001 * 119.99680 * 0.02562 * 23 22 2 25 25 C 1.38809 * 119.99850 * 179.97438 * 23 22 2 26 26 N 1.31613 * 120.00225 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00107 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47389 * 60.00084 * 27 25 23 29 29 H 1.48497 * 109.47307 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47026 * 300.00519 * 27 25 23 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 35 35 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 36 36 H 0.97006 * 119.99812 * 0.02562 * 5 4 2 37 37 H 1.08996 * 109.52391 * 182.14732 * 11 10 8 38 38 H 1.08999 * 109.52123 * 61.94628 * 11 10 8 39 39 H 1.09005 * 109.51721 * 295.40855 * 12 11 10 40 40 H 1.08998 * 109.57247 * 175.24997 * 12 11 10 41 41 H 1.08003 * 120.00377 * 359.97438 * 17 16 14 42 42 H 1.07994 * 120.00179 * 180.25410 * 18 17 16 43 43 H 1.08000 * 119.99645 * 179.79532 * 19 18 17 44 44 H 1.08002 * 119.99742 * 179.97438 * 20 19 18 45 45 H 1.08006 * 119.99920 * 179.97438 * 21 20 19 46 46 H 0.96994 * 119.99975 * 265.00388 * 22 2 1 47 47 H 0.97005 * 120.00673 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4291 2.1908 7 8 3.5698 -1.8840 3.1396 8 6 5.6749 -1.5367 2.1307 9 1 5.9683 -2.0229 1.2004 10 8 6.1440 -2.3058 3.2422 11 6 5.8459 -1.7178 4.5121 12 6 6.4624 -0.3172 4.5742 13 8 5.9933 0.4518 3.4627 14 6 6.2914 -0.1363 2.1929 15 1 7.3719 -0.2079 2.0682 16 6 5.7132 0.7178 1.0942 17 6 4.5136 1.3764 1.2894 18 6 3.9853 2.1632 0.2830 19 6 4.6519 2.2839 -0.9219 20 6 5.8492 1.6215 -1.1188 21 6 6.3794 0.8380 -0.1111 22 7 2.0184 -0.6906 -1.1961 23 6 2.1491 -0.0075 -2.3757 24 1 1.8925 1.0404 -2.4241 25 6 2.6124 -0.6618 -3.5089 26 7 2.9255 -1.9387 -3.4498 27 14 2.7914 0.2702 -5.1179 28 1 3.7465 1.3928 -4.9362 29 1 3.3004 -0.6482 -6.1680 30 1 1.4692 0.8069 -5.5288 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.7516 -0.1583 2.1370 35 1 1.6054 -1.7198 1.2952 36 1 3.9824 -0.4621 0.4320 37 1 6.2642 -2.3355 5.3068 38 1 4.7653 -1.6460 4.6356 39 1 7.5488 -0.3952 4.5308 40 1 6.1690 0.1699 5.5041 41 1 3.9905 1.2785 2.2292 42 1 3.0502 2.6810 0.4370 43 1 4.2375 2.8960 -1.7093 44 1 6.3698 1.7155 -2.0604 45 1 7.3146 0.3201 -0.2650 46 1 2.2490 -1.6317 -1.1525 47 1 3.2490 -2.3961 -4.2418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731598119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:23 Heat of formation + Delta-G solvation = -63.669514 kcal Electronic energy + Delta-G solvation = -31568.063736 eV Core-core repulsion = 27524.274995 eV Total energy + Delta-G solvation = -4043.788740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17970 -38.82361 -38.38838 -36.32441 -35.83927 -33.84134 -32.83773 -31.65134 -30.60332 -29.83039 -28.77825 -27.99185 -25.85794 -24.67009 -23.64127 -22.65882 -22.05349 -21.18156 -20.20989 -19.70343 -17.42152 -17.27937 -16.98550 -16.86663 -16.46812 -16.04329 -15.43521 -15.19206 -15.01275 -14.64683 -14.41985 -14.18120 -14.05721 -13.63005 -13.49351 -13.14310 -13.05361 -12.77500 -12.53718 -12.33498 -12.20989 -12.09098 -11.91547 -11.77795 -11.37523 -11.10586 -10.99387 -10.88143 -10.82931 -10.74380 -10.56959 -10.34689 -10.02391 -9.76868 -9.70762 -9.00734 -8.94857 -8.81528 -8.43985 -8.11346 -7.02341 -5.79928 -3.09181 1.51300 1.71603 2.84137 3.36988 3.41432 3.43284 3.44861 3.58236 3.69249 4.03058 4.53850 4.54620 4.68945 4.84610 4.96222 5.09102 5.14004 5.16692 5.29105 5.33661 5.37354 5.45418 5.48372 5.50297 5.58740 5.64789 5.79913 5.87160 5.95941 5.97582 6.08214 6.16531 6.19199 6.29510 6.33321 6.56220 6.63938 6.72934 6.75089 6.85002 6.86670 6.87102 6.97850 7.05296 7.23701 7.64861 7.94206 8.36809 8.55404 9.48833 10.03948 10.39795 11.42219 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.004792 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.173051 B = 5841.295453 C = 6481.291687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.157 3.843 3 H 0.059 0.941 4 C 0.111 3.889 5 N -0.700 5.700 6 C 0.496 3.504 7 O -0.546 6.546 8 C 0.045 3.955 9 H 0.137 0.863 10 O -0.351 6.351 11 C 0.002 3.998 12 C 0.026 3.974 13 O -0.366 6.366 14 C 0.117 3.883 15 H 0.085 0.915 16 C -0.123 4.123 17 C -0.068 4.068 18 C -0.122 4.122 19 C -0.079 4.079 20 C -0.116 4.116 21 C -0.100 4.100 22 N -0.720 5.720 23 C -0.231 4.231 24 H 0.068 0.932 25 C -0.008 4.008 26 N -0.930 5.930 27 Si 0.899 3.101 28 H -0.286 1.286 29 H -0.293 1.293 30 H -0.288 1.288 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.417 0.583 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.520 6.387 12.325 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.047 3.953 3 H 0.077 0.923 4 C -0.013 4.013 5 N -0.355 5.355 6 C 0.281 3.719 7 O -0.426 6.426 8 C -0.017 4.017 9 H 0.154 0.846 10 O -0.268 6.268 11 C -0.074 4.074 12 C -0.051 4.051 13 O -0.285 6.285 14 C 0.059 3.941 15 H 0.103 0.897 16 C -0.124 4.124 17 C -0.087 4.087 18 C -0.140 4.140 19 C -0.097 4.097 20 C -0.135 4.135 21 C -0.118 4.118 22 N -0.362 5.362 23 C -0.363 4.363 24 H 0.086 0.914 25 C -0.204 4.204 26 N -0.579 5.579 27 Si 0.730 3.270 28 H -0.213 1.213 29 H -0.219 1.219 30 H -0.215 1.215 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.258 0.742 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.111 6.164 12.834 15.915 hybrid contribution 0.260 0.098 -1.415 1.442 sum 7.372 6.261 11.419 14.965 Atomic orbital electron populations 1.22387 0.98573 1.01229 1.00244 1.20585 0.92430 0.96157 0.86135 0.92311 1.21707 0.79790 1.01077 0.98774 1.46677 1.08291 1.57106 1.23458 1.20925 0.89778 0.78006 0.83205 1.90562 1.69834 1.48586 1.33572 1.22870 0.91930 0.93951 0.92911 0.84564 1.88155 1.78031 1.47132 1.13523 1.23638 1.03946 0.93953 0.85884 1.23286 0.98578 0.92909 0.90326 1.88136 1.80402 1.46840 1.13125 1.21294 0.98887 0.90125 0.83788 0.89715 1.19279 0.97017 1.01767 0.94287 1.20907 0.94218 0.94396 0.99198 1.21029 0.99726 0.99540 0.93705 1.21143 0.94130 0.97887 0.96568 1.21000 0.96610 0.97332 0.98511 1.20825 0.99636 0.98625 0.92691 1.42415 1.77942 1.10677 1.05160 1.19063 1.36453 0.93602 0.87145 0.91402 1.24661 1.02275 0.95798 0.97706 1.69639 1.50763 1.08578 1.28873 0.86401 0.77740 0.78683 0.84139 1.21256 1.21865 1.21469 0.93289 0.92343 0.94340 0.91989 0.91988 0.74158 0.88119 0.88327 0.92440 0.87789 0.86017 0.86123 0.86093 0.86034 0.86164 0.78237 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.16 2.86 3.05 -67.93 -0.21 2.65 16 3 H 0.06 1.04 5.45 -51.93 -0.28 0.76 16 4 C 0.11 1.92 5.18 -4.05 -0.02 1.90 16 5 N -0.70 -12.02 2.93 -60.30 -0.18 -12.20 16 6 C 0.50 8.64 6.10 -10.98 -0.07 8.57 16 7 O -0.55 -10.73 13.86 -14.27 -0.20 -10.93 16 8 C 0.05 0.68 3.40 -27.81 -0.09 0.58 16 9 H 0.14 1.93 8.14 -51.93 -0.42 1.51 16 10 O -0.35 -5.31 10.51 -62.51 -0.66 -5.96 16 11 C 0.00 0.03 6.59 37.23 0.25 0.27 16 12 C 0.03 0.29 7.05 37.23 0.26 0.55 16 13 O -0.37 -5.02 9.38 -48.80 -0.46 -5.47 16 14 C 0.12 1.57 2.79 -27.81 -0.08 1.49 16 15 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 16 C -0.12 -1.73 3.53 -104.62 -0.37 -2.10 16 17 C -0.07 -1.00 5.57 -39.58 -0.22 -1.22 16 18 C -0.12 -1.76 8.11 -39.58 -0.32 -2.08 16 19 C -0.08 -1.18 10.05 -39.58 -0.40 -1.58 16 20 C -0.12 -1.69 10.05 -39.59 -0.40 -2.08 16 21 C -0.10 -1.36 9.68 -39.59 -0.38 -1.74 16 22 N -0.72 -16.21 4.56 -53.43 -0.24 -16.46 16 23 C -0.23 -5.74 9.93 -15.06 -0.15 -5.89 16 24 H 0.07 1.64 7.83 -52.49 -0.41 1.23 16 25 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -26.46 13.06 55.49 0.72 -25.73 16 27 Si 0.90 21.05 29.55 -169.99 -5.02 16.02 16 28 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.42 7.42 4.98 -40.82 -0.20 7.21 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 1.50 5.44 -51.93 -0.28 1.22 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.12 1.86 7.13 -52.48 -0.37 1.49 16 42 H 0.12 1.59 7.49 -52.49 -0.39 1.20 16 43 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 46 H 0.38 9.64 7.80 -40.82 -0.32 9.32 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -29.91 371.16 -9.27 -39.18 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -6.89 Total: 19.40 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.94 Total: -3.44 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.30 Total: -54.39 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.31 Total: -22.37 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.91 -9.27 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731598119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.492 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds