Wall clock time and date at job start Tue Mar 31 2020 17:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 N 1.46492 * 109.47631 * 174.99916 * 4 2 1 6 6 C 1.34775 * 120.00395 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00014 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00117 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.52302 * 304.86455 * 8 6 5 10 10 O 1.43075 * 109.52470 * 184.67110 * 8 6 5 11 11 C 1.43080 * 113.59448 * 298.05089 * 10 8 6 12 12 C 1.53147 * 109.14742 * 302.04842 * 11 10 8 13 13 O 1.43074 * 109.15304 * 55.30703 * 12 11 10 14 14 C 1.43070 * 113.59392 * 302.05235 * 13 12 11 15 15 H 1.09001 * 109.57849 * 298.01067 * 14 13 12 16 16 C 1.50699 * 109.52302 * 177.85502 * 14 13 12 17 17 C 1.38236 * 119.99857 * 325.04986 * 16 14 13 18 18 C 1.38239 * 120.00177 * 179.79317 * 17 16 14 19 19 C 1.38236 * 119.99621 * 0.45825 * 18 17 16 20 20 C 1.38241 * 119.99994 * 359.77305 * 19 18 17 21 21 C 1.38223 * 119.99860 * 0.02562 * 20 19 18 22 22 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 23 23 C 1.36939 * 119.99792 * 84.99599 * 22 2 1 24 24 H 1.08001 * 119.99680 * 0.02562 * 23 22 2 25 25 C 1.38809 * 119.99850 * 179.97438 * 23 22 2 26 26 N 1.31613 * 120.00225 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00107 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47389 * 60.00084 * 27 25 23 29 29 H 1.48497 * 109.47307 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47026 * 300.00519 * 27 25 23 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 35 35 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 36 36 H 0.97006 * 119.99812 * 0.02562 * 5 4 2 37 37 H 1.08996 * 109.52391 * 182.14732 * 11 10 8 38 38 H 1.08999 * 109.52123 * 61.94628 * 11 10 8 39 39 H 1.09005 * 109.51721 * 295.40855 * 12 11 10 40 40 H 1.08998 * 109.57247 * 175.24997 * 12 11 10 41 41 H 1.08003 * 120.00377 * 359.97438 * 17 16 14 42 42 H 1.07994 * 120.00179 * 180.25410 * 18 17 16 43 43 H 1.08000 * 119.99645 * 179.79532 * 19 18 17 44 44 H 1.08002 * 119.99742 * 179.97438 * 20 19 18 45 45 H 1.08006 * 119.99920 * 179.97438 * 21 20 19 46 46 H 0.96994 * 119.99975 * 265.00388 * 22 2 1 47 47 H 0.97005 * 120.00673 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4291 2.1908 7 8 3.5698 -1.8840 3.1396 8 6 5.6749 -1.5367 2.1307 9 1 5.9683 -2.0229 1.2004 10 8 6.1440 -2.3058 3.2422 11 6 5.8459 -1.7178 4.5121 12 6 6.4624 -0.3172 4.5742 13 8 5.9933 0.4518 3.4627 14 6 6.2914 -0.1363 2.1929 15 1 7.3719 -0.2079 2.0682 16 6 5.7132 0.7178 1.0942 17 6 4.5136 1.3764 1.2894 18 6 3.9853 2.1632 0.2830 19 6 4.6519 2.2839 -0.9219 20 6 5.8492 1.6215 -1.1188 21 6 6.3794 0.8380 -0.1111 22 7 2.0184 -0.6906 -1.1961 23 6 2.1491 -0.0075 -2.3757 24 1 1.8925 1.0404 -2.4241 25 6 2.6124 -0.6618 -3.5089 26 7 2.9255 -1.9387 -3.4498 27 14 2.7914 0.2702 -5.1179 28 1 3.7465 1.3928 -4.9362 29 1 3.3004 -0.6482 -6.1680 30 1 1.4692 0.8069 -5.5288 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.7516 -0.1583 2.1370 35 1 1.6054 -1.7198 1.2952 36 1 3.9824 -0.4621 0.4320 37 1 6.2642 -2.3355 5.3068 38 1 4.7653 -1.6460 4.6356 39 1 7.5488 -0.3952 4.5308 40 1 6.1690 0.1699 5.5041 41 1 3.9905 1.2785 2.2292 42 1 3.0502 2.6810 0.4370 43 1 4.2375 2.8960 -1.7093 44 1 6.3698 1.7155 -2.0604 45 1 7.3146 0.3201 -0.2650 46 1 2.2490 -1.6317 -1.1525 47 1 3.2490 -2.3961 -4.2418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731598119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:22 Heat of formation + Delta-G solvation = -81.163838 kcal Electronic energy + Delta-G solvation = -31568.822347 eV Core-core repulsion = 27524.274995 eV Total energy + Delta-G solvation = -4044.547351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.34358 -39.92840 -39.66757 -37.77718 -37.02234 -35.30097 -34.24111 -33.19961 -31.70359 -30.89195 -30.50241 -29.13950 -27.16729 -25.89308 -25.40847 -23.77992 -23.12657 -22.32962 -21.70534 -21.00591 -19.24326 -18.36375 -18.13946 -18.05233 -17.66828 -17.21736 -16.76331 -16.48327 -16.30496 -16.03220 -15.75737 -15.58031 -15.25208 -14.97852 -14.81977 -14.56085 -14.17092 -13.97425 -13.84501 -13.63385 -13.55618 -13.38022 -13.22070 -13.09407 -12.89607 -12.70712 -12.47570 -12.23936 -12.16614 -12.02773 -11.90449 -11.65182 -11.59647 -11.49612 -10.92024 -10.84512 -10.25952 -10.01166 -9.56013 -9.34749 -8.92307 -7.81321 -5.08707 0.41125 0.60773 1.50563 1.52687 1.54707 1.59440 2.17309 2.57266 2.58534 2.64233 2.92852 3.48490 3.53618 3.64776 3.68467 3.92623 3.97982 4.00128 4.05123 4.11976 4.21043 4.24820 4.37312 4.38634 4.42926 4.45382 4.65186 4.68684 4.73389 4.74661 4.83181 4.85113 4.97766 5.07985 5.08589 5.20623 5.28901 5.44004 5.57438 5.60846 5.63463 5.65752 5.75844 5.78136 6.00083 6.14750 6.37427 6.55496 7.18008 7.45910 8.16671 8.42594 9.41775 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.004792 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.173051 B = 5841.295453 C = 6481.291687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.070 0.930 4 C 0.118 3.882 5 N -0.697 5.697 6 C 0.490 3.510 7 O -0.573 6.573 8 C 0.046 3.954 9 H 0.142 0.858 10 O -0.364 6.364 11 C -0.002 4.002 12 C 0.026 3.974 13 O -0.382 6.382 14 C 0.124 3.876 15 H 0.109 0.891 16 C -0.126 4.126 17 C -0.073 4.073 18 C -0.128 4.128 19 C -0.095 4.095 20 C -0.130 4.130 21 C -0.101 4.101 22 N -0.726 5.726 23 C -0.211 4.211 24 H 0.077 0.923 25 C -0.066 4.066 26 N -0.968 5.968 27 Si 0.952 3.048 28 H -0.270 1.270 29 H -0.307 1.307 30 H -0.288 1.288 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.415 0.585 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.144 0.856 46 H 0.369 0.631 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.442 7.747 13.226 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.088 0.912 4 C -0.007 4.007 5 N -0.352 5.352 6 C 0.277 3.723 7 O -0.454 6.454 8 C -0.016 4.016 9 H 0.159 0.841 10 O -0.281 6.281 11 C -0.078 4.078 12 C -0.050 4.050 13 O -0.302 6.302 14 C 0.066 3.934 15 H 0.126 0.874 16 C -0.127 4.127 17 C -0.092 4.092 18 C -0.146 4.146 19 C -0.113 4.113 20 C -0.148 4.148 21 C -0.119 4.119 22 N -0.366 5.366 23 C -0.343 4.343 24 H 0.095 0.905 25 C -0.258 4.258 26 N -0.620 5.620 27 Si 0.783 3.217 28 H -0.196 1.196 29 H -0.234 1.234 30 H -0.215 1.215 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.256 0.744 37 H 0.145 0.855 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.143 0.857 41 H 0.131 0.869 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.149 0.851 45 H 0.162 0.838 46 H 0.201 0.799 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.017 7.580 13.769 17.644 hybrid contribution -0.071 -0.308 -1.556 1.588 sum 7.946 7.272 12.213 16.284 Atomic orbital electron populations 1.22278 0.97221 1.00983 1.01309 1.20740 0.93178 0.96243 0.84851 0.91192 1.21606 0.80052 1.00222 0.98783 1.46680 1.08122 1.57054 1.23344 1.21455 0.90998 0.77253 0.82606 1.90555 1.70718 1.49644 1.34482 1.22926 0.90028 0.95285 0.93342 0.84086 1.88134 1.77807 1.47887 1.14286 1.23769 1.02654 0.95780 0.85591 1.23473 0.99668 0.91580 0.90312 1.88116 1.80927 1.47424 1.13690 1.21287 0.99803 0.88611 0.83701 0.87385 1.19434 0.96867 1.01603 0.94796 1.20875 0.94596 0.94873 0.98861 1.21147 1.00172 0.99661 0.93602 1.21317 0.94653 0.98437 0.96927 1.21254 0.96732 0.97505 0.99271 1.21101 1.00434 0.98246 0.92152 1.42530 1.78075 1.10018 1.05967 1.19359 1.33574 0.93793 0.87545 0.90522 1.25255 1.03640 0.96417 1.00461 1.69795 1.53190 1.10111 1.28903 0.85522 0.77709 0.77698 0.80725 1.19618 1.23445 1.21492 0.94227 0.93400 0.91106 0.90481 0.93600 0.74355 0.85482 0.91118 0.90288 0.85668 0.86895 0.85206 0.85751 0.85092 0.83812 0.79928 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 9.49 71.98 0.68 -4.45 16 2 C 0.16 5.59 3.05 44.99 0.14 5.73 16 3 H 0.07 2.36 5.45 -2.39 -0.01 2.34 16 4 C 0.12 4.00 5.18 86.38 0.45 4.45 16 5 N -0.70 -23.67 2.93 -463.06 -1.36 -25.03 16 6 C 0.49 16.93 6.10 87.66 0.53 17.47 16 7 O -0.57 -22.59 13.86 15.90 0.22 -22.37 16 8 C 0.05 1.32 3.40 29.89 0.10 1.42 16 9 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 10 O -0.36 -10.50 10.51 -122.90 -1.29 -11.79 16 11 C 0.00 -0.05 6.59 72.03 0.47 0.43 16 12 C 0.03 0.50 7.05 72.03 0.51 1.01 16 13 O -0.38 -9.70 9.38 -136.00 -1.28 -10.98 16 14 C 0.12 3.08 2.79 29.89 0.08 3.16 16 15 H 0.11 2.19 8.05 -2.39 -0.02 2.17 16 16 C -0.13 -3.36 3.53 -19.87 -0.07 -3.43 16 17 C -0.07 -2.06 5.57 22.27 0.12 -1.93 16 18 C -0.13 -3.53 8.11 22.27 0.18 -3.35 16 19 C -0.10 -2.72 10.05 22.27 0.22 -2.50 16 20 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 21 C -0.10 -2.58 9.68 22.27 0.22 -2.36 16 22 N -0.73 -32.43 4.56 -322.94 -1.47 -33.91 16 23 C -0.21 -10.30 9.93 84.03 0.83 -9.46 16 24 H 0.08 3.58 7.83 -2.91 -0.02 3.56 16 25 C -0.07 -3.45 5.50 84.86 0.47 -2.99 16 26 N -0.97 -55.85 13.06 21.65 0.28 -55.57 16 27 Si 0.95 43.10 29.55 68.60 2.03 45.12 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H -0.31 -14.57 7.11 99.48 0.71 -13.86 16 30 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.41 14.55 4.98 -92.70 -0.46 14.09 16 37 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.12 5.44 -2.39 -0.01 2.11 16 39 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.11 3.36 7.13 -2.91 -0.02 3.34 16 42 H 0.13 3.23 7.49 -2.91 -0.02 3.21 16 43 H 0.12 3.37 8.06 -2.91 -0.02 3.35 16 44 H 0.13 3.27 8.06 -2.91 -0.02 3.24 16 45 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 46 H 0.37 18.73 7.80 -92.71 -0.72 18.01 16 47 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 Total: -1.00 -63.92 371.16 2.11 -61.81 By element: Atomic # 1 Polarization: 53.07 SS G_CDS: -0.19 Total: 52.88 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 5.17 Total: -0.16 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -2.55 Total: -114.50 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -2.35 Total: -45.14 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -63.92 2.11 -61.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731598119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.358 kcal (2) G-P(sol) polarization free energy of solvation -63.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds